BAC Information

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BAC

Clone NameB6Ng01-292N21
Chromosome10 (Build37)
Map Location 53,992,803 - 54,137,849
singlet/doubletdoublet
Overlap genenone
Upstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N21.bB6Ng01-292N21.g
ACCGA089394GA089395
length1,1371,127
definitionB6Ng01-292N21.b B6Ng01-292N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,136,705 - 54,137,849)(53,992,803 - 53,993,940)
sequence
gaattcctgagagtgatttcagagctttagtttccgttacttcatcacct
ctaatcttattaaatagtctcaattcttcatgagcagagttaaaaatgca
ttgaaatatcttcatattcgattacctgtttcttagtatatttccattca
taacctactcttcactagaatcccaacaaaggctatcgacatttttctgt
catttatgcgtgtgtttctataatatgcatgtgtttacaagtatgtgcac
tcatatgtgtctgtgggtgcatgatcacacatatgtatacatgtagaaga
ctaaatttggtactgtgagtcttcccctaacatgtcccacatattctctc
aggcaatgtttctcatgtaagcctagaacatactgatttgggcattctgt
ctatccagcttgctacaagaatattgcttcccgctcgaccggcaagaaag
acgcaacaaaccagaatcttccgcggcaaaagctttattgcttgcttctc
aggaagatcccaaaccgggaaaatggcgctgcttttataacccgcagcgt
gacgtttcagcacctgatatggcgtgacagctcccgattcgttgcttgcc
catcaccccactattacaccccgagaatgggagtgactaggagtgaattc
actcttgcacctgcgtacaggacttgtttactagttaggcccgcgccatc
ttataatggcgattgctcgcggcacacacggctctcctcagagattactg
gcagcacgcatgcgattgctcgcagcacgtaccggctctccacacaagaa
tcctgtctccattttccaaccgccaagattacaggtgggctgccatgctc
atccctcatttacactgctgctggggattctaattctaatcattatgcct
gcacagcaagtagattaaccactgagcaatctccccagggccccagacta
tcaaatttttggttaatcgtctcttaatgggttttccccaacagtaaata
cttagctctcttcccacatacttatgaaaatatatctcttaacaatgggt
ctatttatacaacagggatgtcaacattgaaatggagcagcagataatac
aggccctcagctggcattgtataagaatacctcaagt

gaattctatatccagatctgcaggcagcaggaaggaaggaagattatata
ctgctagacctggttttgaacttctgaaacctcaaagcctaccccctggt
ggtacacttcctccaacaaagccccacctaccacaacaagaccagacttc
caaatagtgccacttcctgtgagcctatgggggccagtctttcaaactct
catataccctggtgattattttcttttccaaggttctgacttggtatatc
aaactccatgtattctttgttccactgggggcccccaaggatacaggtcc
tttttgttttagctctacttctctctcccaattaaatgtcttcctttcta
agagttgccatgattttattaataactatgtaaagtttctattctctttt
tgaaggcaagatcttgcttgaagtatcctgaaactcaagtatcgttagat
ttcaagtgtattctgactctgtgtccaactgaactgggacatttccacta
acagaactcttttaattttaagtttatacgcatatacatgcatgcatggg
tatggtcacctacatatatgtgtggaggccaacggttattatctcgtgtt
ttgttttgttttgtttttttcccattgcactccttattttatgagacagg
gtctttcattgaactcagagttaatatttctgctggattggctggttaat
aagggtctaggatttgcctgacactatggtctcaccttcaacactggagt
tacaggtagacttggaaggattggaactcagattcccatgcttattcacc
aaacagtttcccaacccacagtatttccagcttgtaactggatatttttt
aaattttttattagatattttcttcatttacatttcaagtgctagcccaa
aattcccctataccgtccccctgccctgctccctacccactcactcccac
ttcttgggcctggaattcccctatacgggacatataaaagtttgctagac
taagggcctgtctctcaatgaagtcgactaggcatcttctgagaacatat
gcagctagagacattgaacctctagggtactgctagttcatatgtgtcac
ctataggttggaacccttcagctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54136705_54137849
seq2: B6Ng01-292N21.b_50_1186 (reverse)

seq1  ACTTGAGTAATTTCTTATACAAAGGCAAGGCTGA-GGCTTGTATTTATCT  49
      |||||||  | ||||||||||| | ||  ||||| ||| |||| ||||| 
seq2  ACTTGAGGTA-TTCTTATACAATGCCA--GCTGAGGGCCTGTA-TTATC-  45

seq1  TGCTGCTCATTTTCAATGTTGACATCCCTGTTGTATAAATAAGACCATTG  99
      ||||||||  |||||||||||||||||||||||||||||||   ||||||
seq2  TGCTGCTCCATTTCAATGTTGACATCCCTGTTGTATAAATAGACCCATTG  95

seq1  TTAAAGAAGATTATAATTTTTCATAAGTATGTGGGAAGAGAGCCTAAGTA  149
      ||||   ||| ||||  ||||||||||||||||||||||||| |||||||
seq2  TTAA--GAGA-TATA--TTTTCATAAGTATGTGGGAAGAGAG-CTAAGTA  139

seq1  TTTACTGTTGGGGAAAA-CCATTAAGAGACGATTAACCAAAAATTTGATA  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTACTGTTGGGGAAAACCCATTAAGAGACGATTAACCAAAAATTTGATA  189

seq1  GTCTGGGG-CCTGGGGAGATTGCTCAGTGGTTAATCTACTTGCTGTGCAG  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGCCCTGGGGAGATTGCTCAGTGGTTAATCTACTTGCTGTGCAG  239

seq1  GCATAATGATTAGAATTAGAATCCCCAGCAGCAGTGTAAATGAGGGATGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATGATTAGAATTAGAATCCCCAGCAGCAGTGTAAATGAGGGATGA  289

seq1  GCATGGCAGCCCACCTGTAATCTTGGCGGTTGGAAAATGGAGACAGGATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAGCCCACCTGTAATCTTGGCGGTTGGAAAATGGAGACAGGATT  339

seq1  CTTGTGTGGAGAGCCGGTACGTGCTGCGAGCAATCGCATGCGTGCTGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGGAGAGCCGGTACGTGCTGCGAGCAATCGCATGCGTGCTGCCA  389

seq1  GTAATCTCTGAGGAGAGCCGTGTGTGCCGCGAGCAATCGCCATTATAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTCTGAGGAGAGCCGTGTGTGCCGCGAGCAATCGCCATTATAAGA  439

seq1  TGGCGCGGGCCTAACTAGTAAACAAGTCCTGTACGCAGGTGCAAGAGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCGGGCCTAACTAGTAAACAAGTCCTGTACGCAGGTGCAAGAGTGA  489

seq1  ATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGG  539

seq1  CAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCAC  589

seq1  GCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCTGA  639

seq1  GAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGTCT  689

seq1  TTCTTGCCGGTCGAGCGGGAAGCAATATTCTTGTAGCAAGCTGGATAGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCGGTCGAGCGGGAAGCAATATTCTTGTAGCAAGCTGGATAGAC  739

seq1  AGAATGCCCAAATCAGTATGTTCTAGGCTTACATGAGAAACATTGCCTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCCAAATCAGTATGTTCTAGGCTTACATGAGAAACATTGCCTGA  789

seq1  GAGAATATGTGGGACATGTTAGGGGAAGACTCACAGTACCAAATTTAGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATGTGGGACATGTTAGGGGAAGACTCACAGTACCAAATTTAGTC  839

seq1  TTCTACATGTATACATATGTGTGATCATGCACCCACAGACACATATGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATGTATACATATGTGTGATCATGCACCCACAGACACATATGAGT  889

seq1  GCACATACTTGTAAACACATGCATATTATAGAAACACACGCATAAATGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACTTGTAAACACATGCATATTATAGAAACACACGCATAAATGAC  939

seq1  AGAAAAATGTCGATAGCCTTTGTTGGGATTCTAGTGAAGAGTAGGTTATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGTCGATAGCCTTTGTTGGGATTCTAGTGAAGAGTAGGTTATG  989

seq1  AATGGAAATATACTAAGAAACAGGTAATCGAATATGAAGATATTTCAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATATACTAAGAAACAGGTAATCGAATATGAAGATATTTCAATG  1039

seq1  CATTTTTAACTCTGCTCATGAAGAATTGAGACTATTTAATAAGATTAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACTCTGCTCATGAAGAATTGAGACTATTTAATAAGATTAGAG  1089

seq1  GTGATGAAGTAACGGAAACTAAAGCTCTGAAATCACTCTCAGGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAGTAACGGAAACTAAAGCTCTGAAATCACTCTCAGGAATTC  1137


seq1: chr10_53992803_53993940
seq2: B6Ng01-292N21.g_67_1193

seq1  GAATTCTATATCCAGATCTGCAGGCAGCAGGAAGGAAGGAAGATTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATCCAGATCTGCAGGCAGCAGGAAGGAAGGAAGATTATATA  50

seq1  CTGCTAGACCTGGTTTTGAACTTCTGAAACCTCAAAGCCTACCCCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGACCTGGTTTTGAACTTCTGAAACCTCAAAGCCTACCCCCTGGT  100

seq1  GGTACACTTCCTCCAACAAAGCCCCACCTACCACAACAAGACCAGACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTTCCTCCAACAAAGCCCCACCTACCACAACAAGACCAGACTTC  150

seq1  CAAATAGTGCCACTTCCTGTGAGCCTATGGGGGCCAGTCTTTCAAACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTGCCACTTCCTGTGAGCCTATGGGGGCCAGTCTTTCAAACTCT  200

seq1  CATATACCCTGGTGATTATTTTCTTTTCCAAGGTTCTGACTTGGTATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCCTGGTGATTATTTTCTTTTCCAAGGTTCTGACTTGGTATATC  250

seq1  AAACTCCATGTATTCTTTGTTCCACTGGGGGCCCCCAAGGATACAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCATGTATTCTTTGTTCCACTGGGGGCCCCCAAGGATACAGGTCC  300

seq1  TTTTTGTTTTAGCTCTACTTCTCTCTCCCAATTAAATGTCTTCCTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTAGCTCTACTTCTCTCTCCCAATTAAATGTCTTCCTTTCTA  350

seq1  AGAGTTGCCATGATTTTATTAATAACTATGTAAAGTTTCTATTCTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCCATGATTTTATTAATAACTATGTAAAGTTTCTATTCTCTTTT  400

seq1  TGAAGGCAAGATCTTGCTTGAAGTATCCTGAAACTCAAGTATCGTTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAAGATCTTGCTTGAAGTATCCTGAAACTCAAGTATCGTTAGAT  450

seq1  TTCAAGTGTATTCTGACTCTGTGTCCAACTGAACTGGGACATTTCCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGTATTCTGACTCTGTGTCCAACTGAACTGGGACATTTCCACTA  500

seq1  ACAGAACTCTTTTAATTTTAAGTTTATACGCATATACATGCATGCATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCTTTTAATTTTAAGTTTATACGCATATACATGCATGCATGGG  550

seq1  TATGGTCACCTACATATATGTGTGGAGGCCAACGGTTATTATCTCGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCACCTACATATATGTGTGGAGGCCAACGGTTATTATCTCGTGTT  600

seq1  TTGTTTTGTTTTGTTTTTTTCCCATTGCACTCCTTATTTTATGAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTTTTCCCATTGCACTCCTTATTTTATGAGACAGG  650

seq1  GTCTTTCATTGAACTCAGAGTTAATATTTCTGCTGGATTGGCTGGTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCATTGAACTCAGAGTTAATATTTCTGCTGGATTGGCTGGTTAAT  700

seq1  AAGGGTCTAGGATTTGCCTGACACTATGGTCTCACCTTCAACACTGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTAGGATTTGCCTGACACTATGGTCTCACCTTCAACACTGGAGT  750

seq1  TACAGGTAGACTTGGAAGGATTGGAACTCAGATTCCCATGCTTATTCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAGACTTGGAAGGATTGGAACTCAGATTCCCATGCTTATTCACC  800

seq1  AAACAGTTTCCCAACCCACAGTATTTCCAGCTTGTAACTGGATATTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTCCCAACCCACAGTATTTCCAGCTTGTAACTGGATATTTTTT  850

seq1  AAATTTTTTATTAGATATTTTCTTCATTTACATTTCAAGTGCTAGCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTATTAGATATTTTCTTCATTTACATTTCAAGTGCTAGCCCAA  900

seq1  AATTCCCCTATACCGTCCCCCTGCCCTGCTCCCCTACCCACTCACTCCCA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATTCCCCTATACCGTCCCCCTGCCCTGCT-CCCTACCCACTCACTCCCA  949

seq1  CTTCTTGGCCCTGGAATTCCCCTATACGGGGACATAT-AAAGTTTGCTAG  999
      |||||||| |||||||||||||||||| ||||||||| ||||||||||||
seq2  CTTCTTGGGCCTGGAATTCCCCTATAC-GGGACATATAAAAGTTTGCTAG  998

seq1  ACTAAGGGGCCTGTCTTCTCAATGAAGGTCGACTAGGCCATCTTCTGAG-  1048
      ||||| ||||||||| |||||||||| |||||||||| ||||||||||| 
seq2  ACTAA-GGGCCTGTC-TCTCAATGAA-GTCGACTAGG-CATCTTCTGAGA  1044

seq1  ACATATGCAGCTAGAGACA-TGAA-CTCTAGGGGTACTGGTTAGTTCATA  1096
      ||||||||||||||||||| |||| ||||| ||||||| | |||||||||
seq2  ACATATGCAGCTAGAGACATTGAACCTCTA-GGGTACT-GCTAGTTCATA  1092

seq1  TTGTTGTTCCACCTATAGGGTTGTAGACCCCTTCAGCTCTTG  1138
          |||  |||||||| |||||  || ||||||||||||||
seq2  ----TGTGTCACCTATA-GGTTG--GAACCCTTCAGCTCTTG  1127


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