BAC Information

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BAC

Clone NameB6Ng01-293A22
Chromosome10 (Build37)
Map Location 71,826,194 - 71,941,247
singlet/doubletdoublet
Overlap genenone
Upstream geneIpmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293A22.bB6Ng01-293A22.g
ACCGA089533GA089534
length9131,047
definitionB6Ng01-293A22.b B6Ng01-293A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,826,194 - 71,827,105)(71,940,197 - 71,941,247)
sequence
gaattccacttccgtgtcccattaacacttgaaggagtagggtagacagt
tcagccaccagaaaggattacatcccagcatgcactagaaatggatccac
atacatcaatgcctccttgttttgattttggtttccatttgtcacatcaa
tatgatctttatgcattgatgcataatatgtgactgacctttggttggtt
ttggtatatgctcagctgtactaaaagcatgatttagtggaccattttta
tatttccccccttgccctttgaagagtaggttagtaaaatgatacataca
cagattaaagtgaaattgataagtttgaagacccaggaccatcattcact
agctttgcaaagcaacccagctatcagtttcctcatcatgatgtcttgaa
ttctagaaaaaaaaatgagtactcaacaaatttgatttgatttttatatg
atcttaggaatgttcattaagaaaatggatgccaacaagtgattgctgac
agaagcctgttatagctgtctcctgagaggcttcaccagtgcctgacaaa
tacagaggtggatgatcgcagcctaccattgaactgaacacagggtcctc
aatgaagaagctagagaaaagacccaaggagctgaaggggtttgcagctc
cataggaggaacaacaatatgaacttaccaatacccccagagttcccagg
gactaaaccaccaattaaagagtacacatgatgggagtcatggctccagc
tgcatatgtagcagaggatggtctagttggtcatcaatgggaggagaggc
ccttggtcctgtgaaggctcgatgccccagtgtaggggaataccagtgtc
aggaagcagaagtgggtggtttggtgagcaaagagaagggagagtacgag
gggggaggggatg

gaattcacagcaatgattcatattgactgaaattgttacctcagtatcat
tttcttatatttatttatttatttatgtacttttagaatttaagtgtagt
atttcacttaatatgtgtgaatcagagagaaaaaaaacatccaaaactga
gtcttcagattaaaaacaaagatgttatctgagagtgcagacacatggga
tgatccttcatccccacggatgggcttccaataagcaaagtgcctctctt
tatgaacacagagccttttgtgacttagtcaattattctaatctactgaa
ccttccttctacactccatttttgtgaacttgcatgaaatattgattact
gtagatatttttacccgttatgcctggaactctttgatatattagttacc
attcctaaagataatagcagaatgaagcattttgtgctgtcaaatctttt
ttcatacgttaactatactttgtgcttatatttaggatttttctcatatt
actatttccatgtgtacaactatacattggggccacttcctattaaaatg
actatcaacaaaaatgttcaaagtgagaagagagagtgaaaaaatgtgat
aaagaacttcaacattaaaaagtcatgatttttaattgcctagtacattt
tatttcattaaaacttaattgcaaaatattctgaactcagatttctaagg
gtgttaatggtctgagtgaggtgtttccaagtgattaaaatgtaatttcc
ccactaaatatatttgccactgtgtttgcaacttggattaaaaataaaag
gcagactcaaagttacaatcagaggtgtcctgattatttaaaaaaaaaaa
aagcataaccagatttctcaatgtttttgaatgtgtgaaagtcatactga
gaacagacaggcgagatgttagctctaagtaaataaagtgaagtgcagcc
gtacctcctggttagaaagtagtaaagatagaacaaatctttctttttaa
aaagatgtgtttacctttatttttgtgtgcatgaatgtttgaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_71826194_71827105
seq2: B6Ng01-293A22.b_44_956

seq1  GAATTCCACTTCCGTGTCCCATTAACACTTGAAGGAGTAGGGTAGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCCGTGTCCCATTAACACTTGAAGGAGTAGGGTAGACAGT  50

seq1  TCAGCCACCAGAAAGGATTACATCCCAGCATGCACTAGAAATGGATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACCAGAAAGGATTACATCCCAGCATGCACTAGAAATGGATCCAC  100

seq1  ATACATCAATGCCTCCTTGTTTTGATTTTGGTTTCCATTTGTCACATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCAATGCCTCCTTGTTTTGATTTTGGTTTCCATTTGTCACATCAA  150

seq1  TATGATCTTTATGCATTGATGCATAATATGTGACTGACCTTTGGTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTTTATGCATTGATGCATAATATGTGACTGACCTTTGGTTGGTT  200

seq1  TTGGTATATGCTCAGCTGTACTAAAAGCATGATTTAGTGGACCATTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATATGCTCAGCTGTACTAAAAGCATGATTTAGTGGACCATTTTTA  250

seq1  TATTTCCCCCCTTGCCCTTTGAAGAGTAGGTTAGTAAAATGATACATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCCCTTGCCCTTTGAAGAGTAGGTTAGTAAAATGATACATACA  300

seq1  CAGATTAAAGTGAAATTGATAAGTTTGAAGACCCAGGACCATCATTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAAGTGAAATTGATAAGTTTGAAGACCCAGGACCATCATTCACT  350

seq1  AGCTTTGCAAAGCAACCCAGCTATCAGTTTCCTCATCATGATGTCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCAAAGCAACCCAGCTATCAGTTTCCTCATCATGATGTCTTGAA  400

seq1  TTCTAGAAAAAAAAATGAGTACTCAACAAATTTGATTTGATTTTTATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAAAAAAAATGAGTACTCAACAAATTTGATTTGATTTTTATATG  450

seq1  ATCTTAGGAATGTTCATTAAGAAAATGGATGCCAACAAGTGATTGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGAATGTTCATTAAGAAAATGGATGCCAACAAGTGATTGCTGAC  500

seq1  AGAAGCCTGTTATAGCTGTCTCCTGAGAGGCTTCACCAGTGCCTGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTGTTATAGCTGTCTCCTGAGAGGCTTCACCAGTGCCTGACAAA  550

seq1  TACAGAGGTGGATGATCGCAGCCTACCATTGAACTGAACACAGGGTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGTGGATGATCGCAGCCTACCATTGAACTGAACACAGGGTCCTC  600

seq1  AATGAAGAAGCTAGAGAAAAGACCCAAGGAGCTGAAGGGGTTTGCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAGCTAGAGAAAAGACCCAAGGAGCTGAAGGGGTTTGCAGCTC  650

seq1  CATAGGAGGAACAACAATATGAACTTACCAATACCCCCAGAGTTCCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAGGAACAACAATATGAACTTACCAATACCCCCAGAGTTCCCAGG  700

seq1  GACTAAACCACCAATTAAAGAGTACACATGATGGGAGTCATGGCTCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAACCACCAATTAAAGAGTACACATGATGGGAGTCATGGCTCCAGC  750

seq1  TGCATATGTAGCAGAGGATGGTCTAGTTGGTCATCAATGGGAGGAGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTAGCAGAGGATGGTCTAGTTGGTCATCAATGGGAGGAGAGGC  800

seq1  CCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAGGGGAATACCAGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAGGGGAATACCAGTGTC  850

seq1  AGGAAGCAGAAGTGGGTGGTTTGGTGAGCAAAGAGAAGGGAGAGTACGA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAAGCAGAAGTGGGTGGTTTGGTGAGCAAAGAGAAGGGAGAGTACGAG  900

seq1  GGGGGAGGGGATG  912
      |||||||||||||
seq2  GGGGGAGGGGATG  913


seq1: chr10_71940197_71941247
seq2: B6Ng01-293A22.g_65_1111 (reverse)

seq1  TGTATTCAAACATTCATGCACAC-AAAATAAAGGTAAACACATCTTTTTT  49
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TGTATTCAAACATTCATGCACACAAAAATAAAGGTAAACACATC-TTTTT  49

seq1  AAAAAGAAAGATTTGTTCTATTCTTTAACTACCTTTTCTAACCAGGAGGT  99
      |||||||||||||||||||| ||||| |||||  ||||||||||||||||
seq2  AAAAAGAAAGATTTGTTCTA-TCTTT-ACTAC--TTTCTAACCAGGAGGT  95

seq1  ACGGCTGCACTTCACTTTATTTACCTTAGAGCTAACATCTCGCCTGTCTG  149
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACGGCTGCACTTCACTTTATTTA-CTTAGAGCTAACATCTCGCCTGTCTG  144

seq1  TTCTCAGTATGACTTTCACACATTCAAAAACATTGAGAAATCTGGTTATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTATGACTTTCACACATTCAAAAACATTGAGAAATCTGGTTATG  194

seq1  C-TTTTTTTTTTTTAAATAATCAGGACACCTCTGATTGTAACTTTGAGTC  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTAAATAATCAGGACACCTCTGATTGTAACTTTGAGTC  244

seq1  TGCCTTTTATTTTTAATCCAAGTTGCAAACACAGTGGCAAATATATTTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTATTTTTAATCCAAGTTGCAAACACAGTGGCAAATATATTTAG  294

seq1  TGGGGAAATTACATTTTAATCACTTGGAAACACCTCACTCAGACCATTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAATTACATTTTAATCACTTGGAAACACCTCACTCAGACCATTAA  344

seq1  CACCCTTAGAAATCTGAGTTCAGAATATTTTGCAATTAAGTTTTAATGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTAGAAATCTGAGTTCAGAATATTTTGCAATTAAGTTTTAATGAA  394

seq1  ATAAAATGTACTAGGCAATTAAAAATCATGACTTTTTAATGTTGAAGTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTACTAGGCAATTAAAAATCATGACTTTTTAATGTTGAAGTTC  444

seq1  TTTATCACATTTTTTCACTCTCTCTTCTCACTTTGAACATTTTTGTTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACATTTTTTCACTCTCTCTTCTCACTTTGAACATTTTTGTTGAT  494

seq1  AGTCATTTTAATAGGAAGTGGCCCCAATGTATAGTTGTACACATGGAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTAATAGGAAGTGGCCCCAATGTATAGTTGTACACATGGAAAT  544

seq1  AGTAATATGAGAAAAATCCTAAATATAAGCACAAAGTATAGTTAACGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATGAGAAAAATCCTAAATATAAGCACAAAGTATAGTTAACGTAT  594

seq1  GAAAAAAGATTTGACAGCACAAAATGCTTCATTCTGCTATTATCTTTAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGATTTGACAGCACAAAATGCTTCATTCTGCTATTATCTTTAGG  644

seq1  AATGGTAACTAATATATCAAAGAGTTCCAGGCATAACGGGTAAAAATATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAACTAATATATCAAAGAGTTCCAGGCATAACGGGTAAAAATATC  694

seq1  TACAGTAATCAATATTTCATGCAAGTTCACAAAAATGGAGTGTAGAAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATCAATATTTCATGCAAGTTCACAAAAATGGAGTGTAGAAGGA  744

seq1  AGGTTCAGTAGATTAGAATAATTGACTAAGTCACAAAAGGCTCTGTGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGTAGATTAGAATAATTGACTAAGTCACAAAAGGCTCTGTGTTC  794

seq1  ATAAAGAGAGGCACTTTGCTTATTGGAAGCCCATCCGTGGGGATGAAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGAGGCACTTTGCTTATTGGAAGCCCATCCGTGGGGATGAAGGA  844

seq1  TCATCCCATGTGTCTGCACTCTCAGATAACATCTTTGTTTTTAATCTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCATGTGTCTGCACTCTCAGATAACATCTTTGTTTTTAATCTGAA  894

seq1  GACTCAGTTTTGGATGTTTTTTTTCTCTCTGATTCACACATATTAAGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTTTGGATGTTTTTTTTCTCTCTGATTCACACATATTAAGTGA  944

seq1  AATACTACACTTAAATTCTAAAAGTACATAAATAAATAAATAAATATAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACACTTAAATTCTAAAAGTACATAAATAAATAAATAAATATAAG  994

seq1  AAAATGATACTGAGGTAACAATTTCAGTCAATATGAATCATTGCTGTGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATACTGAGGTAACAATTTCAGTCAATATGAATCATTGCTGTGAA  1044

seq1  TTC  1051
      |||
seq2  TTC  1047


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