BAC Information

Click to search

BAC

Clone NameB6Ng01-293K19
Chromosome10 (Build37)
Map Location 105,061,841 - 105,118,206
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293K19.bB6Ng01-293K19.g
ACCGA089998GA089999
length1,1311,137
definitionB6Ng01-293K19.b B6Ng01-293K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,117,564 - 105,118,206)(105,061,841 - 105,062,978)
sequence
gaattcttctaccatggctgatgtcagcctactaacatgacatcactgca
caagaattgagaagtccccactactactccattgcatgctatttcccaca
ttttaatataagaaatgtagataatttaaaatgcatacagcgatagcatt
aattgccaaatttacacaatctagagtcatatgggagatgctttgggaag
atacatcttaattgtggggaagaccagtccctgaactgtatataaaatgg
agaaaaggaaatgattgctaactttccttcatccctctctatgatcatgg
atatcatgtgacaaactccttcaagactggtgccttgactttcccattat
gacggcaataacttcaagtatgagctacagcaaaccctttctcctttaag
ttgcttttgtcagaatattttatcacagcaattggaaaggaggtgaaaaa
aaacagacatacagaatagtaaagtatagcatagctaggatttagacagc
acaaaatattaattttgagttctgattgtttagtaagaaaatgctgttat
gaagtttatatattttaatttttaataattgctattaaatctgctcataa
aattcctgggtttaacaattggctctggtaggtcagcttctggcagacca
ataatcctgatgatatatctgtatctagggtcacttggttgagaagccat
gaaaatcatctccctcccttttcctctctccctcctccttccctctcttt
ttgtggtaaataaatagggtttgtgttggattttagtctttttagctttt
gaaaaaataatgcattgattctcattacataccagaaacaaaaaaaaatt
atttaagaagagtcataattgatcttcttttgtatggtttcctcatgaaa
aatttggtggttaatgttttggtatcaactaacatggtttttttttcttg
tggtcacttagcctagtgactcctacattcaaggcagccatgatagcttt
gcataagagtctgtcaaggcaagaaacaaaaacaatcccctcctcccttc
aaagttgcttatctttctgagttcaaacagaattgtttctatgttttata
gttataggcagtagtctgaatctctactatg

gaattctctatggaggaagcctggcaaagcaaggctaaaatccagcaaat
agcaaaattggagaggcaccaggcagcctcatcgctgccctctttgtttt
aggattttccatcctggggaaccatttcttcagtttccttccaggtaaac
tactttgtaccttaactacctcaagttgaattttgttgcttataactaca
gtgtccaaaataatgcaatatgcatataatatttttgaacctgtgacata
tgtttcaaagaaatatcctttgaaacattctttgctatagaggataaaca
tctactttcacaaaagaaagaaaaaaaaaataaaagataaacaacccagt
aaacagatctactgagaagaaagtcatttctaaaggaaggaaccagaaaa
tttgaaattgcctcaggacaatcccaagttgctagtgattgttagtattg
agataactctttattctccaggttaataatatggaaactatgacaatgaa
aaatcttaagtaagctggaggttttaactgttattttatagagtttttaa
tatatggaagaatagatttcaggtcctgtgccacttactttagactaggt
ttttgcaaacatgactaaaatggccaatggcacaaagcaaactagaaaaa
tgaaaagaatgggtaatttacatactggaaagctaatcccagatgacccc
ttatgaatggggagaggattattcaagttttccaaggcaacagtctagag
aggaagaaagaagagcagaagtctgtgctaacatttgggtataattacgc
agcggaatatataattaaaccaacaacaatgaagattattccacagcatc
taaacttttctcgttggtggccaaagtaaaaatgctgccacattaaacat
gtaagtcggagagaccaccaacatgatgctcggggaacggcatcaggcgg
ttgtagtttctgtcatttccttcagcatctccttgcaccagagctcagag
ctggaggatgcagtttcttgatgatctagtgtaactgtagactttcatgt
tccacagaccacacactgtgccagctgtgagtggagccatttgtgtcaag
cattcaaagaaacatctgactcgcattaaggtatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_105117564_105118206
seq2: B6Ng01-293K19.b_533_1177 (reverse)

seq1  CATAGTAGGGTTTCAAGACTACTGCTTAT-ACTATAAATTATAGAAACAA  49
      |||||||| | ||| |||||||||| ||| ||||||||  ||||||||||
seq2  CATAGTAGAGATTC-AGACTACTGCCTATAACTATAAAACATAGAAACAA  49

seq1  TTCTGTTTTGAACTCAG-AAGATAAGCAACTTTGGAGG--GGGGGGGATT  96
      ||||| ||||||||||| |||||||||||||||| |||  || |||||||
seq2  TTCTG-TTTGAACTCAGAAAGATAAGCAACTTTGAAGGGAGGAGGGGATT  98

seq1  G-TTTTGTTTCTGGCCTTGACAGAACTCTTATGCAAAGCTATCATGGCTG  145
      | |||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GTTTTTGTTTCTTGCCTTGACAG-ACTCTTATGCAAAGCTATCATGGCTG  147

seq1  CCTGGATTGTAGGAGTCACTAGGCTAAGTGACCACAAGAAAAAAAAACCA  195
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATGTAGGAGTCACTAGGCTAAGTGACCACAAGAAAAAAAAACCA  197

seq1  TGTTAGTTGATACCAAAACATTAACCACCAAATTTTTCATGAGGAAACCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTGATACCAAAACATTAACCACCAAATTTTTCATGAGGAAACCA  247

seq1  TACAAAAGAAGATCAATTATGACTCTTCTTAAATAATTTTTTTTTGTTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGAAGATCAATTATGACTCTTCTTAAATAATTTTTTTTTGTTTC  297

seq1  TGGTATGTAATGAGAATCAATGCATTATTTTTTCAAAAGCTAAAAAGACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTAATGAGAATCAATGCATTATTTTTTCAAAAGCTAAAAAGACT  347

seq1  AAAATCCAACACAAACCCTATTTATTTACCACAAAAAGAGAGGGAAGGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAACACAAACCCTATTTATTTACCACAAAAAGAGAGGGAAGGAG  397

seq1  GAGGGAGAGAGGAAAAGGGAGGGAGATGATTTTCATGGCTTCTCAACCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGAGGAAAAGGGAGGGAGATGATTTTCATGGCTTCTCAACCAA  447

seq1  GTGACCCTAGATACAGATATATCATCAGGATTATTGGTCTGCCAGAAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTAGATACAGATATATCATCAGGATTATTGGTCTGCCAGAAGCT  497

seq1  GACCTACCAGAGCCAATTGTTAAACCCAGGAATTTTATGAGCAGATTTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACCAGAGCCAATTGTTAAACCCAGGAATTTTATGAGCAGATTTAA  547

seq1  TAGCAATTATTAAAAATTAAAATATATAAACTTCATAACAGCATTTTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTATTAAAAATTAAAATATATAAACTTCATAACAGCATTTTCTT  597

seq1  ACTAAACAATCAGAACTCAAAATTAATATTTTGTGCTGTCTAAATCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAATCAGAACTCAAAATTAATATTTTGTGCTGTCTAAATCCT  645


seq1: chr10_105061841_105062978
seq2: B6Ng01-293K19.g_68_1204

seq1  GAATTCTCTATGGAGGAAGCCTGGCAAAGCAAGGCTAAAATCCAGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGGAGGAAGCCTGGCAAAGCAAGGCTAAAATCCAGCAAAT  50

seq1  AGCAAAATTGGAGAGGCACCAGGCAGCCTCATCGCTGCCCTCTTTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTGGAGAGGCACCAGGCAGCCTCATCGCTGCCCTCTTTGTTTT  100

seq1  AGGATTTTCCATCCTGGGGAACCATTTCTTCAGTTTCCTTCCAGGTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCCATCCTGGGGAACCATTTCTTCAGTTTCCTTCCAGGTAAAC  150

seq1  TACTTTGTACCTTAACTACCTCAAGTTGAATTTTGTTGCTTATAACTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTACCTTAACTACCTCAAGTTGAATTTTGTTGCTTATAACTACA  200

seq1  GTGTCCAAAATAATGCAATATGCATATAATATTTTTGAACCTGTGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAAATAATGCAATATGCATATAATATTTTTGAACCTGTGACATA  250

seq1  TGTTTCAAAGAAATATCCTTTGAAACATTCTTTGCTATAGAGGATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAAGAAATATCCTTTGAAACATTCTTTGCTATAGAGGATAAACA  300

seq1  TCTACTTTCACAAAAGAAAGAAAAAAAAAATAAAAGATAAACAACCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTCACAAAAGAAAGAAAAAAAAAATAAAAGATAAACAACCCAGT  350

seq1  AAACAGATCTACTGAGAAGAAAGTCATTTCTAAAGGAAGGAACCAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATCTACTGAGAAGAAAGTCATTTCTAAAGGAAGGAACCAGAAAA  400

seq1  TTTGAAATTGCCTCAGGACAATCCCAAGTTGCTAGTGATTGTTAGTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTGCCTCAGGACAATCCCAAGTTGCTAGTGATTGTTAGTATTG  450

seq1  AGATAACTCTTTATTCTCCAGGTTAATAATATGGAAACTATGACAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTCTTTATTCTCCAGGTTAATAATATGGAAACTATGACAATGAA  500

seq1  AAATCTTAAGTAAGCTGGAGGTTTTAACTGTTATTTTATAGAGTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAAGTAAGCTGGAGGTTTTAACTGTTATTTTATAGAGTTTTTAA  550

seq1  TATATGGAAGAATAGATTTCAGGTCCTGTGCCACTTACTTTAGACTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAAGAATAGATTTCAGGTCCTGTGCCACTTACTTTAGACTAGGT  600

seq1  TTTTGCAAACATGACTAAAATGGCCAATGGCACAAAGCAAACTAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAACATGACTAAAATGGCCAATGGCACAAAGCAAACTAGAAAAA  650

seq1  TGAAAAGAATGGGTAATTTACATACTGGAAAGCTAATCCCAGATGACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAATGGGTAATTTACATACTGGAAAGCTAATCCCAGATGACCCC  700

seq1  TTATGAATGGGGAGAGGATTATTCAAGTTTTCCAAGGCAACAGTCTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATGGGGAGAGGATTATTCAAGTTTTCCAAGGCAACAGTCTAGAG  750

seq1  AGGAAGAAAGAAGAGCAGAAGTCTGTGCTAACATTTGGGTATAATTACGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGAAGAGCAGAAGTCTGTGCTAACATTTGGGTATAATTACGC  800

seq1  AGCGGAATATATAATTAAACCAACAACAATGAAGATTATTCCACAGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAATATATAATTAAACCAACAACAATGAAGATTATTCCACAGCATC  850

seq1  TAAACTTTTCTCGTTGGTGGCCAAAGTAAAAATGCTGCCACATTAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTTCTCGTTGGTGGCCAAAGTAAAAATGCTGCCACATTAAACAT  900

seq1  GTAAGTCGGAGAGACCACCAACATGATGCTCGGGGAACGGCATCAGGCGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCGGAGAGACCACCAACATGATGCTCGGGGAACGGCATCAGGCGG  950

seq1  TTTGTAGTTTCTGTCATTTCCTTCAGCATCTCCTTGCACCAGAGCTCAGA  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGTAGTTTCTGTCATTTCCTTCAGCATCTCCTTGCACCAGAGCTCAGA  999

seq1  GCTGGGAGGATGCAGTTTCTTGATGATCTTAGGTGTAACTGTAGACCTTC  1050
      ||| |||||||||||||||||||||||||   |||||||||||||| |||
seq2  GCT-GGAGGATGCAGTTTCTTGATGATCT--AGTGTAACTGTAGACTTTC  1046

seq1  ATGTT-CACAGACAACACAACTGTG-CAGCTGTGAGT-GAG-CATTTGTG  1096
      ||||| ||||||| |||| |||||| ||||||||||| ||| ||||||||
seq2  ATGTTCCACAGACCACAC-ACTGTGCCAGCTGTGAGTGGAGCCATTTGTG  1095

seq1  TTCAGGAATCAAAAGAACATCTGACTCGCATTAAGTTATAGG  1138
      |  || | |||||  |||||||||||||||||||| ||||||
seq2  TCAAGCATTCAAAGAAACATCTGACTCGCATTAAGGTATAGG  1137


| Home | SequenceCutter | Blast | Download |