BAC Information

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BAC

Clone NameB6Ng01-294N20
ChromosomeX (Build37)10 (Build37)
Map Location 86,775,476 - 86,776,000100,794,494 - 100,795,012
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294N20.bB6Ng01-294N20.g
ACCGA090883GA090884
length787519
definitionB6Ng01-294N20.b B6Ng01-294N20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,775,476 - 86,776,000)(100,794,494 - 100,795,012)
sequence
gaattcctgatctttccaaaacttttatcataaatgcgtgttggactttg
tcaaatgctttctccgcatctaacgagatgatcatgtggtttttgagttt
gagtttgtttatatagtggattatgttgatgaatttccatatattaaatc
atccctgcattcctggaatgaagcctacttgatcatgatggataattgtt
ttgatgtgttcttggattcagttagggggaactttattgagtaattttgc
attgatattcataagggacattgatctgaagttctctttctttgttgggt
ctttaagttgtttaggtataagagtaattatggagaatgaatggcagagt
actttctgtttctattttgtggaacagtttgaggagaattggaattagtt
cttctttgaaggtctcatagaactctgcaataaacccatttggtcctggg
cttttttggttgggagactattaatgattgcttctattttttcaggggat
aagtgactgtttaggtcattaatctgatcctgacttaaccttggctcctg
ttatctgtctagaaaattgtccatttcatccaggttttccagtttcattt
agaatatccttttgtagtaggatctgatgatgttttgttttggatttcct
catgttctgttgttatgtctcccttttcatttctgattttgtaattagga
ttctgtccctgtgccctctagtagtctggctaagggttttatctatcttg
ttgattttctcaaagaaccagtccctggttggttgat

gaattcatgaaatacagaatatttcactatttttaattttgttcttttat
cataaacaaaaatttatctgaaaaatttctttaaaatgtatatatatact
tatacattttaagtatactgaccaaacaatgacatatagcagtgttaaaa
taagatacatcatagcaacttggtaagaatttactgataggtcttaaatt
tacctcaggtactattgttagtagagggagtttagacatgaaagaattta
gccattatagggcattagcctgtcctccttttgtatgggattactaaaaa
aagtgttaattctttctcatccaaagttttaaattctttgcttgatttct
actttgaaaataacatgtgaatgaaataagaaacttaaagtggatcacag
atcttttggatatatatatatatatatatatatatatatatatatatata
tacatatgtaattataatatatttcatatatgtgatataattataattat
atatgtatatgtatgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86775476_86776000
seq2: B6Ng01-294N20.b_356_833 (reverse)

seq1  ATCAACCAAACAAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGGT-A  49
      ||||||||| || ||| ||||||||||||||||||||||||||||| | |
seq2  ATCAACCAACCAGGGA-CTGGTTCTTTGAGAAAATCAACAAGATAGATAA  49

seq1  AACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGAATCCTAATTAAC  99
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AACCCTTAGCCAGACT-ACTAGAGGGCACAGGGACAGAATCCTAATT-AC  97

seq1  AAAATCAGAAATGAAAAGGGAGACATAACAACAGATCTTTGAAGAAATCC  149
      ||||||||||||||||||||||||||||||||||| |  ||| |||||||
seq2  AAAATCAGAAATGAAAAGGGAGACATAACAACAGAAC-ATGAGGAAATCC  146

seq1  AAAGCAA-----CATCAGATCCTTCTACAAAAGGCTATACTCAAAAAAAA  194
      ||| |||     ||||||||||| |||||||||| ||| ||         
seq2  AAAACAAAACATCATCAGATCCTACTACAAAAGGATATTCT---------  187

seq1  AAAAAACAAACAAACAAAAAACAAAAAAACAAACAAAAAAATTGGAGAAC  244
                               |||  ||||        |||| |||
seq2  -------------------------AAATGAAAC--------TGGAAAAC  204

seq1  CTGGATGAAATGGACAAATTTCTAGACAAATACCAGGTACCCAAGTTAAA  294
      ||||||||||||||||| |||||||||| ||| ||||  || | ||||| 
seq2  CTGGATGAAATGGACAATTTTCTAGACAGATAACAGGAGCCAAGGTTAAG  254

seq1  TCAGGATCAAGTTAACGATTTAAA-AGTCCCATATCCCCTAAAGAAATAG  343
      |||||||||  |||| ||  |||| |||| | |||||||| || ||||||
seq2  TCAGGATCAGATTAATGACCTAAACAGTCACTTATCCCCTGAAAAAATAG  304

seq1  AAGCAGTCATTAATAGTCTCCCAATCAAAAAAGCCCAGGACCAGATGGGT  393
      ||||| |||||||||||||||||| |||||||||||||||||| ||||||
seq2  AAGCAATCATTAATAGTCTCCCAACCAAAAAAGCCCAGGACCAAATGGGT  354

seq1  TTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTG  443
      ||| ||||||||||||| |||||||||||||||| ||||||||| |||| 
seq2  TTATTGCAGAGTTCTATGAGACCTTCAAAGAAGAACTAATTCCAATTCTC  404

seq1  CACAAACTATTCCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATT  493
      | |||||| |||||||||||||||  |||| ||||||| ||  | |||||
seq2  CTCAAACTGTTCCACAAAATAGAAACAGAAAGTACTCTGCC--ATTCATT  452

seq1  CTATTAATCCACAATTACTCTGATACCTAAAC  525
      |      |||| ||||||||| ||||||||||
seq2  C------TCCATAATTACTCTTATACCTAAAC  478


seq1: chr10_100794494_100795012
seq2: B6Ng01-294N20.g_68_586 (reverse)

seq1  TACATATACATATATATATATAATTATAATTATATCACATATATGAAATA  50
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACACATACATATACATATATAATTATAATTATATCACATATATGAAATA  50

seq1  TATTATAATTACAAAAGTATATATATATATATATATATATATATATATAT  100
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  TATTATAATTACATATGTATATATATATATATATATATATATATATATAT  100

seq1  ATATATATATCCAAAAGATCTGTGATCCACTTTAAGTTTCTTATTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATCCAAAAGATCTGTGATCCACTTTAAGTTTCTTATTTCATT  150

seq1  CACATGTTATTTTCAAAGTAGAAATCAAGCAAAGAATTTAAAACTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTATTTTCAAAGTAGAAATCAAGCAAAGAATTTAAAACTTTGGA  200

seq1  TGAGAAAGAATTAACACTTTTTTTAGTAATCCCATACAAAAGGAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAATTAACACTTTTTTTAGTAATCCCATACAAAAGGAGGACAG  250

seq1  GCTAATGCCCTATAATGGCTAAATTCTTTCATGTCTAAACTCCCTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCCCTATAATGGCTAAATTCTTTCATGTCTAAACTCCCTCTACT  300

seq1  AACAATAGTACCTGAGGTAAATTTAAGACCTATCAGTAAATTCTTACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGTACCTGAGGTAAATTTAAGACCTATCAGTAAATTCTTACCAA  350

seq1  GTTGCTATGATGTATCTTATTTTAACACTGCTATATGTCATTGTTTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATGATGTATCTTATTTTAACACTGCTATATGTCATTGTTTGGTC  400

seq1  AGTATACTTAAAATGTATAAGTATATATATACATTTTAAAGAAATTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTTAAAATGTATAAGTATATATATACATTTTAAAGAAATTTTTC  450

seq1  AGATAAATTTTTGTTTATGATAAAAGAACAAAATTAAAAATAGTGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATTTTTGTTTATGATAAAAGAACAAAATTAAAAATAGTGAAATA  500

seq1  TTCTGTATTTCATGAATTC  519
      |||||||||||||||||||
seq2  TTCTGTATTTCATGAATTC  519


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