BAC Information

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BAC

Clone NameB6Ng01-297L17
Chromosome10 (Build37)
Map Location 126,684,588 - 126,884,451
singlet/doubletdoublet
Overlap geneKif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c
Downstream geneStac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297L17.bB6Ng01-297L17.g
ACCGA093020GA093021
length1,159948
definitionB6Ng01-297L17.b B6Ng01-297L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,883,281 - 126,884,451)(126,684,588 - 126,685,524)
sequence
ttgtgtcaaatgtctttttagccactgagctaattattacttgctaaata
tgtgtttatatgcaaagtttgttttgttttgttttgtttaaggcagtgac
ttatgtagcctgggctgggctgggctgggctgattgttcagtctctacct
tccaaatgctagaaatacaggtgtgcataactcactacattcagttagca
gtttgagactatatagcactggctaggctggaactcagtatatagattag
gctggccttgaactcacaaagatctgactcctttgcttcctaaatgctgg
gactaaggcatgtgctaccatagccagcagcagtttattttttgatagtt
aaaaaatatcaggctgggggctggcaaaatggctcagaaggtaagagcac
tgactgctcttccaaaggtcctgacttcaaattccagaaaccacatggtg
gctcacaacccccgtaatgagatctgatgccctcttctggtgtgtctgaa
gatagctacagtgtactcatatcaataaaataaatttttaaaaaaatcac
tggtagggctggggacatgattcactggttaaaagcactgggtgctattc
cctagagttcagtccctagcacccacatagagagtaactcacaaatgctg
cacctccaatggatccaacacttcaggcactgcagaacacatggtacaca
gacagacagacagacaggtaaaacactcatacacataaaataaataaaaa
tctcaaaaaaaatcaatatcactggtgggactaaagagatgggtcagtag
ttaagagcactggctactcttgtaaaggacagatttcagttcccacctcc
cacacggtggctaacaactgttaaactctagtcccagtggatccaagcag
ccgctactggcctctgtaggcactgcatgcactgcatacacaacatgata
tgcagatgacacacagctatcatgcagacaaaacactcattcatcattca
ttcatcattcagttctgtctgtctgtctgtctgtctcctgtctgctgtcc
gtctgtctgtcagatgggtctgggccactgtaatcttagcattggggcat
actcagggttagcttaactacatgaatgctgtctaaaaccttaagaagta
aatacacaa
gaattcaaggttctcatccatggagtagatgtggttgaagatgtctcgag
cgatccggggaatgatgcccatcagctgagggtcgtgcagcttcccctga
ggagtgaaggcatgccggagtaaggctgaggtgcacagggagacaacact
gaggggatacgggggtgagcagtgacatgaggggcatcctcagttgggag
aaggtcaccaccgtggctgcctgtgaatggaagctgacagctgagcagcg
tctggactatcaatgctgctggatttctagatacaaggaggacaactgga
gtcacgaaagggagtggaagtgtgagggctgagggacgcctctaaacctc
cctaccacattgtccctcacttcatcctccagacccatctgcctctgact
cagctcacccccgactcctggatttcccccgatagactgacttcttgatc
ttcttgaccttccccggaatccctcaaggcctgagtcagaaccctcacct
ccatggtatgcgttttccctgaggatgtctgtccataagcgaagattgtg
ccattgtaaccagcaaggacgtctgaaagagaaggcagagaaggctgcct
ggtggtggcggtgggtaatggcggacacgagaagtacatcctgaaggcaa
agtctcttacctttgacgatctgcatggcacaggcgtggtaaacctgctc
ctgagtggtgtttggggggaagacgcggtcaaagacatatggcttttccc
tggaggggaaagaaaacaggccaggcatgagcaggagagtgatgtggaag
tgggataccttcagaccttttccatcagcctgcgcagggcatctctctct
tctagcccggtaaaacacaaacacacgggatggtggcagataagagaaac
cccgtggaagagaggctgagtttaccgctgatgggggggggttggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126883281_126884451
seq2: B6Ng01-297L17.b_57_1215 (reverse)

seq1  TTGTGTATTTACTCTTTAGTGTTTTTAAGACAGGCATTCATGTAGTTAAA  50
      |||||||||||||  |||  |||||  ||||| |||||||||||||| ||
seq2  TTGTGTATTTACTTCTTAAGGTTTT--AGACA-GCATTCATGTAGTT-AA  46

seq1  GCTAACCCTGAAGTATGCCCCCCAAAATGCTAGGATTACAGT-GCCCAGA  99
      |||||||||| ||||||||||    ||||||| ||||||||| |||||||
seq2  GCTAACCCTG-AGTATGCCCC----AATGCTAAGATTACAGTGGCCCAGA  91

seq1  ACCATCTTGACAGACAGACGGACAGGCAGACAGGGAGACAGACAGACAGA  149
       ||||| ||||||||||||||||| ||||||| |||||||||||||||||
seq2  CCCATC-TGACAGACAGACGGACA-GCAGACA-GGAGACAGACAGACAGA  138

seq1  CAGACAG-ACTGAATGAATGAATGAATGAATGAATGAGTGTTTTGTCTGC  198
      ||||||| |||||||| ||||||||||| |||||||||||||||||||||
seq2  CAGACAGAACTGAATG-ATGAATGAATG-ATGAATGAGTGTTTTGTCTGC  186

seq1  ATGAATAGCTGTGTGTCATCTGCATATCATGTTGTGTATGCAGTGCATGC  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-ATAGCTGTGTGTCATCTGCATATCATGTTGTGTATGCAGTGCATGC  235

seq1  AGTGCCTACAGAGGCCAGTAGCGGCTGCTTGGATCCACTGGGACTAGAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTACAGAGGCCAGTAGCGGCTGCTTGGATCCACTGGGACTAGAGT  285

seq1  TAAACAGTTGTTAGCCACCGTGTGGGAGGTGGGAACTG-AATCTGTCCTT  347
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTAACAGTTGTTAGCCACCGTGTGGGAGGTGGGAACTGAAATCTGTCCTT  335

seq1  TACAAGAGTAGCCAGTGCTCTTAACTACTGACCCATCTCTTTAGTCCCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGTAGCCAGTGCTCTTAACTACTGACCCATCTCTTTAGTCCCAC  385

seq1  CAGTGATATTGATTTTTTTTGAGATTTTTATTTATTTTATGTGTATGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATATTGATTTTTTTTGAGATTTTTATTTATTTTATGTGTATGAGT  435

seq1  GTTTTACCTGTCTGTCTGTCTGTCTGTGTACCATGTGTTCTGCAGTGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCTGTCTGTCTGTCTGTCTGTGTACCATGTGTTCTGCAGTGCCT  485

seq1  GAAGTGTTGGATCCATTGGAGGTGCAGCATTTGTGAGTTACTCTCTATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTGGATCCATTGGAGGTGCAGCATTTGTGAGTTACTCTCTATGT  535

seq1  GGGTGCTAGGGACTGAACTCTAGGGAATAGCACCCAGTGCTTTTAACCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTAGGGACTGAACTCTAGGGAATAGCACCCAGTGCTTTTAACCAG  585

seq1  TGAATCATGTCCCCAGCCCTACCAGTGATTTTTTTAAAAATTTATTTTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGTCCCCAGCCCTACCAGTGATTTTTTTAAAAATTTATTTTAT  635

seq1  TGATATGAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGCATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGCATCA  685

seq1  GATCTCATTACGGGGGTTGTGAGCCACCATGTGGTTTCTGGAATTTGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTACGGGGGTTGTGAGCCACCATGTGGTTTCTGGAATTTGAAG  735

seq1  TCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCTTCTGAGCCATTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCTTCTGAGCCATTTTG  785

seq1  CCAGCCCCCAGCCTGATATTTTTTAACTATCAAAAAATAAACTGCTGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCCAGCCTGATATTTTTTAACTATCAAAAAATAAACTGCTGCTG  835

seq1  GCTATGGTAGCACATGCCTTAGTCCCAGCATTTAGGAAGCAAAGGAGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGTAGCACATGCCTTAGTCCCAGCATTTAGGAAGCAAAGGAGTCA  885

seq1  GATCTTTGTGAGTTCAAGGCCAGCCTAATCTATATACTGAGTTCCAGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGTGAGTTCAAGGCCAGCCTAATCTATATACTGAGTTCCAGCCT  935

seq1  AGCCAGTGCTATATAGTCTCAAACTGCTAACTGAATGTAGTGAGTTATGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGCTATATAGTCTCAAACTGCTAACTGAATGTAGTGAGTTATGC  985

seq1  ACACCTGTATTTCTAGCATTTGGAAGGTAGAGACTGAACAATCAGCCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTATTTCTAGCATTTGGAAGGTAGAGACTGAACAATCAGCCCAG  1035

seq1  CCCAGCCCAGCCCAGGCTACATAAGTCACTGCCTTAAACAAAACAAAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCAGCCCAGGCTACATAAGTCACTGCCTTAAACAAAACAAAACA  1085

seq1  AAACAAACTTTGCATATAAACACATATTTAGCAAGTAATAATTAGCTCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACTTTGCATATAAACACATATTTAGCAAGTAATAATTAGCTCAG  1135

seq1  TGGCTAAAAAGACATTTGACACAA  1171
      ||||||||||||||||||||||||
seq2  TGGCTAAAAAGACATTTGACACAA  1159

seq1: chr10_126684588_126685524
seq2: B6Ng01-297L17.g_67_1014

seq1  GAATTCAAGGTTCTCATCCATGGAGTAGATGTGGTTGAAGATGTCTCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTCTCATCCATGGAGTAGATGTGGTTGAAGATGTCTCGAG  50

seq1  CGATCCGGGGAATGATGCCCATCAGCTGAGGGTCGTGCAGCTTCCCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCGGGGAATGATGCCCATCAGCTGAGGGTCGTGCAGCTTCCCCTGA  100

seq1  GGAGTGAAGGCATGCCGGAGTAAGGCTGAGGTGCACAGGGAGACAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAGGCATGCCGGAGTAAGGCTGAGGTGCACAGGGAGACAACACT  150

seq1  GAGGGGATACGGGGGTGAGCAGTGACATGAGGGGCATCCTCAGTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATACGGGGGTGAGCAGTGACATGAGGGGCATCCTCAGTTGGGAG  200

seq1  AAGGTCACCACCGTGGCTGCCTGTGAATGGAAGCTGACAGCTGAGCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACCACCGTGGCTGCCTGTGAATGGAAGCTGACAGCTGAGCAGCG  250

seq1  TCTGGACTATCAATGCTGCTGGATTTCTAGATACAAGGAGGACAACTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTATCAATGCTGCTGGATTTCTAGATACAAGGAGGACAACTGGA  300

seq1  GTCACGAAAGGGAGTGGAAGTGTGAGGGCTGAGGGACGCCTCTAAACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGAAAGGGAGTGGAAGTGTGAGGGCTGAGGGACGCCTCTAAACCTC  350

seq1  CCTACCACATTGTCCCTCACTTCATCCTCCAGACCCATCTGCCTCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACATTGTCCCTCACTTCATCCTCCAGACCCATCTGCCTCTGACT  400

seq1  CAGCTCACCCCCGACTCCTGGATTTCCCCCGATAGACTGACTTCTTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACCCCCGACTCCTGGATTTCCCCCGATAGACTGACTTCTTGATC  450

seq1  TTCTTGACCTTCCCCGGAATCCCTCAAGGCCTGAGTCAGAACCCTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACCTTCCCCGGAATCCCTCAAGGCCTGAGTCAGAACCCTCACCT  500

seq1  CCATGGTATGCGTTTTCCCTGAGGATGTCTGTCCATAAGCGAAGATTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTATGCGTTTTCCCTGAGGATGTCTGTCCATAAGCGAAGATTGTG  550

seq1  CCATTGTAACCAGCAAGGACGTCTGAAAGAGAAGGCAGAGAAGGCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAACCAGCAAGGACGTCTGAAAGAGAAGGCAGAGAAGGCTGCCT  600

seq1  GGTGGTGGCGGTGGGTAATGGCGGACACGAGAAGTACATCCTGAAGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCGGTGGGTAATGGCGGACACGAGAAGTACATCCTGAAGGCAA  650

seq1  AGTCTCTTACCTTTGACGATCTGCATGGCACAGGCGTGGTAAACCTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTACCTTTGACGATCTGCATGGCACAGGCGTGGTAAACCTGCTC  700

seq1  CTGAGTGGTGTTTGGGGGGAAGACGCGGTCAAAGACATATGGC-TTTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAGTGGTGTTTGGGGGGAAGACGCGGTCAAAGACATATGGCTTTTCCC  750

seq1  TGGAGGGGAAAGAAAACAGGCCAGGCATGAGCAGGAGAGTGATGTGGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGAAAGAAAACAGGCCAGGCATGAGCAGGAGAGTGATGTGGAAG  800

seq1  TGGGATACC-TCAGACC-TTTCCATCAGCCTGCGCAGGGCATCTCTCTC-  846
      ||||||||| ||||||| ||||||||||||||||||||||||||||||| 
seq2  TGGGATACCTTCAGACCTTTTCCATCAGCCTGCGCAGGGCATCTCTCTCT  850

seq1  TCTAGCCCGG-AAAACACAAACACACGGGATGGTGGCAGATAAGAGAA--  893
      |||||||||| |||||||||||||||||||||||||||||||||||||  
seq2  TCTAGCCCGGTAAAACACAAACACACGGGATGGTGGCAGATAAGAGAAAC  900

seq1  CCCGTGG-AGAGAGGCTGAGTTTACCGCTGATGGGGGGG---TGGGGT  937
      ||||||| |||||||||||||||||||||||||||||||   ||||||
seq2  CCCGTGGAAGAGAGGCTGAGTTTACCGCTGATGGGGGGGGGTTGGGGT  948