BAC Information

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BAC

Clone NameB6Ng01-299B23
Chromosome10 (Build37)
Map Location 38,918,068 - 39,100,643
singlet/doubletdoublet
Overlap geneEG624165, LOC100040964, Fyn
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1
Downstream geneLOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299B23.bB6Ng01-299B23.g
ACCGA094053GA094054
length1,1141,087
definitionB6Ng01-299B23.b B6Ng01-299B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,918,068 - 38,919,189)(39,099,556 - 39,100,643)
sequence
gaattctaggaaccagaaagagagggatggaggtaaggctttttttttct
ccttgattctttttcccaaagtctatcttgtgagtccttctagcaaactc
ccaataaaaggcttgtccttgacattgaacctctcctttgtgatgtaagc
tgactatactaacacaagaaggcattccttggggcgtgattccgtcctgt
gcggctgttctgtggaacaggaggcagttgttttccgtccggcttccccc
acaccgaagtgcgcgcctccacctcatggaagactcgatggatatgtaca
tgagtcctcttaggcctcagaactaccttttcggctgtgaactaaaggct
gacaaagactatcactttaaagtggataatgatgaaaatgagcaccagtt
gtcgttaagaacggtcagtttaggagcaggggcaaaagatgagttacaca
tcgtagaggcagaagcaatgaactatgaaggcagtccaattaaagtcaca
ctggcaactttgaaaatgtctgtacaaccaacagtttcccttgggggctt
tgaaattacacctcctgtggtcttacggttgaagtgtagttcagggcctg
tgcacattagtggacagcatctagtagctgtagaggaagatgcagagtct
gaagatgaagatgaggaggacgtaaaactcttaggcatgtctggaaagcg
atctgctcctggaggtggtaacaaggttccacagaaaaaaagtaaaactt
gatgaagatgatgaggacgatgatgaggatgatgaagaagaagaagaaga
tgattttgaagaagaggaaactgaagaaaaggtaccagtgaagaaatctg
tacgagataccccagccaaaaatgcacaaaaatcaaacctaaatggaaaa
gactttaaaacccgtcaacaccaagatcaaagggtcaagagtcctttcaa
aaaacaggaaaagactactaaaacaccaaaagggacctagttctgtagag
acatttaaggcaaaaaaatgcaagcagtacagaaaaagcacatgggaaca
tcctggcactactggttaatagccaaagatgggaagagaaaggagaacca
aatagtacatcagc
gaattcttcttacaaaggaaagggcgcagtgtgccctgtcctctctgctt
tcaccttcacttgcaggaaggcaagcaagggagtcacagcactttcacac
aagaagatggaacatctaaattattacctaaaagcagaatatgagggagg
ggggctggagagatggctcagcagttaagaacactggctgttcttccaaa
ggacctgggttcaattcccagcacccacgtggcagctcacacctgcctgt
aactccagttccaggggatctgatgccctcacacagacagacacgcaggc
agaacaccaatgcacataaagtaaaaataaattataaaaaagaaacaaac
aaacagaatatagattgcaaactgactctgagaatctataagcacagcgg
atcatctgagggactgcccacaacagggaaggaaggtttcttaagacaac
ctccatctagaaccattcctaaaaacatgcaggaacactagccagaaagc
aaattagtgcacagcttgctgtagtttaatacaacctttgagtctagtgc
tactaaaacagacagtattgacggtgacgtgcacaaaagaggctggacat
gaacaaactgggtaaatatgtcacatggtgacattagaagccagcaaagg
gtaaaggccatcttgtcacaggagaatgtgacctcctactcttaaggtag
ggggcaggggaattttaaactagactctgcatggctaaagcaaatagcac
accccacccccacttctcaaagatcacaatagcattgtgaacaacagtga
tcaccaggcacactccctttgcttctgcagctgtcctacatccatagaaa
atgttctttccacgctagcacatgaaacccagcactcaggggagggctag
gtaggggaagccattaacgaggaaccccggtgcagctcacaggtggctca
gaagactcttagtgaatgcctgacaaacaccttcccaattgtgctgtctg
tctttggttggggggtaaaaaaatggactgaactgaatcctcctgtacca
tgaaaccatttataaaaggctcaattccctaccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38918068_38919189
seq2: B6Ng01-299B23.b_46_1159

seq1  GAATTCTAGGAACCAGAAAGAGAGGGATGGAGGTAAGGCTTTTTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAACCAGAAAGAGAGGGATGGAGGTAAGGCTTTTTTTTTCT  50

seq1  CCTTGATTCTTTTTCCCAAAGTCTATCTTGTGAGTCCTTCTAGCAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTCTTTTTCCCAAAGTCTATCTTGTGAGTCCTTCTAGCAAACTC  100

seq1  CCAATAAAAGGCTTGTCCTTGACATTGAACCTCTCCTTTGTGATGTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAAGGCTTGTCCTTGACATTGAACCTCTCCTTTGTGATGTAAGC  150

seq1  TGACTATACTAACACAAGAAGGCATTCCTTGGGGCGTGATTCCGTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATACTAACACAAGAAGGCATTCCTTGGGGCGTGATTCCGTCCTGT  200

seq1  GCGGCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCCGTCCGGCTTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCCGTCCGGCTTCCCCC  250

seq1  ACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATGTACA  300

seq1  TGAGTCCTCTTAGGCCTCAGAACTACCTTTTCGGCTGTGAACTAAAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTCTTAGGCCTCAGAACTACCTTTTCGGCTGTGAACTAAAGGCT  350

seq1  GACAAAGACTATCACTTTAAAGTGGATAATGATGAAAATGAGCACCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGACTATCACTTTAAAGTGGATAATGATGAAAATGAGCACCAGTT  400

seq1  GTCGTTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGTTACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGTTACACA  450

seq1  TCGTAGAGGCAGAAGCAATGAACTATGAAGGCAGTCCAATTAAAGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGAGGCAGAAGCAATGAACTATGAAGGCAGTCCAATTAAAGTCACA  500

seq1  CTGGCAACTTTGAAAATGTCTGTACAACCAACAGTTTCCCTTGGGGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAACTTTGAAAATGTCTGTACAACCAACAGTTTCCCTTGGGGGCTT  550

seq1  TGAAATTACACCTCCTGTGGTCTTACGGTTGAAGTGTAGTTCAGGGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTACACCTCCTGTGGTCTTACGGTTGAAGTGTAGTTCAGGGCCTG  600

seq1  TGCACATTAGTGGACAGCATCTAGTAGCTGTAGAGGAAGATGCAGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTAGTGGACAGCATCTAGTAGCTGTAGAGGAAGATGCAGAGTCT  650

seq1  GAAGATGAAGATGAGGAGGACGTAAAACTCTTAGGCATGTCTGGAAAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAAGATGAGGAGGACGTAAAACTCTTAGGCATGTCTGGAAAGCG  700

seq1  ATCTGCTCCTGGAGGTGGTAACAAGGTTCCACAGAAAAAAAGTAAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCTGGAGGTGGTAACAAGGTTCCACAGAAAAAAAGTAAAACTT  750

seq1  GATGAAGATGATGAGGACGATGATGAGGATGATGAAGAAGAAGAAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGATGATGAGGACGATGATGAGGATGATGAAGAAGAAGAAGAAGA  800

seq1  TGATTTTGAAGAAGAGGAAACTGAAGAAAAGGTACCAGTGAAGAAATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGAAGAAGAGGAAACTGAAGAAAAGGTACCAGTGAAGAAATCTG  850

seq1  TACGAGATACCCCAGCCAAAAATGCACAAAAATCAAACCTAAATGGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGATACCCCAGCCAAAAATGCACAAAAATCAAACCTAAATGGAAAA  900

seq1  GACTT--AAAACCGTCAACACCAAGATCAAAGGGTCAAGAGTCC-TTCAA  947
      |||||  ||| ||||||||||||||||||||||||||||||||| |||||
seq2  GACTTTAAAACCCGTCAACACCAAGATCAAAGGGTCAAGAGTCCTTTCAA  950

seq1  AAAACAGGAAAAGACTACTAAAACACCAAAA-GGACCTAGTTCTGTAGAA  996
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  AAAACAGGAAAAGACTACTAAAACACCAAAAGGGACCTAGTTCTGTAG-A  999

seq1  GACA-TTAAGGCAAAAAAATGCAAGCAAGTACAGAAAAAGCACAT-GGAA  1044
      |||| ||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GACATTTAAGGCAAAAAAATGCAAGC-AGTACAGAAAAAGCACATGGGAA  1048

seq1  CATTCCTGGGCACTACTGGTAAATTAAGCCCAAAGATGGGGAAAGAGGAA  1094
      || |||| |||||||||||| |||  || |||||||||||  |||||  |
seq2  CA-TCCT-GGCACTACTGGTTAAT--AG-CCAAAGATGGG--AAGAG--A  1089

seq1  AAGGAGAAACAAATATAGTACCATCAGC  1122
      |||||||| |||  |||||| |||||||
seq2  AAGGAGAACCAA--ATAGTA-CATCAGC  1114

seq1: chr10_39099556_39100643
seq2: B6Ng01-299B23.g_68_1154 (reverse)

seq1  GGATGGTA-GGAAATGAGCTTTTTATAAAATGTTTTCCATGGTTACAGGA  49
      |||||||| |||| ||||| |||||||||  ||||  ||||| |||||||
seq2  GGATGGTAGGGAATTGAGCCTTTTATAAATGGTTT--CATGG-TACAGGA  47

seq1  GGAATCAGTCCAGTCATTTTTTTTACCCCCCAACAAAAGACAGAACAGCA  99
      ||| ||||| |||||  ||||||||||||||||| |||||||| ||||||
seq2  GGATTCAGTTCAGTCCATTTTTTTACCCCCCAACCAAAGACAG-ACAGCA  96

seq1  CAAT--GGGAGGTGTTTGTCAGGCATTCACTAAGAGTCTTCTGAGCCACC  147
      ||||  || |||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGGAAGGTGTTTGTCAGGCATTCACTAAGAGTCTTCTGAGCCACC  146

seq1  TGTGAGCTGCACCGGGGTTCCTCGTTAATGGCTTCCCCTACCTAGCCCTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCACCGGGGTTCCTCGTTAATGGCTTCCCCTACCTAGCCCTC  196

seq1  CCCTGAGTGCTGGGTTTCATGTGCTAGCGTGGAAAGAACATTTTCTATGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTGCTGGGTTTCATGTGCTAGCGTGGAAAGAACATTTTCTATGG  246

seq1  ATGTAGGACAGCTGCAGAAGCAAAGGGAGTGTGCCTGGTGATCACTGTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGACAGCTGCAGAAGCAAAGGGAGTGTGCCTGGTGATCACTGTTG  296

seq1  TTCACAATGCTATTGTGATCTTTGAGAAGTGGGGGTGGGGTGTGCTATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGCTATTGTGATCTTTGAGAAGTGGGGGTGGGGTGTGCTATTT  346

seq1  GCTTTAGCCATGCAGAGTCTAGTTTAAAATTCCCCTGCCCCCTACCTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGCCATGCAGAGTCTAGTTTAAAATTCCCCTGCCCCCTACCTTAA  396

seq1  GAGTAGGAGGTCACATTCTCCTGTGACAAGATGGCCTTTACCCTTTGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAGGTCACATTCTCCTGTGACAAGATGGCCTTTACCCTTTGCTG  446

seq1  GCTTCTAATGTCACCATGTGACATATTTACCCAGTTTGTTCATGTCCAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATGTCACCATGTGACATATTTACCCAGTTTGTTCATGTCCAGC  496

seq1  CTCTTTTGTGCACGTCACCGTCAATACTGTCTGTTTTAGTAGCACTAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTGCACGTCACCGTCAATACTGTCTGTTTTAGTAGCACTAGAC  546

seq1  TCAAAGGTTGTATTAAACTACAGCAAGCTGTGCACTAATTTGCTTTCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTTGTATTAAACTACAGCAAGCTGTGCACTAATTTGCTTTCTGG  596

seq1  CTAGTGTTCCTGCATGTTTTTAGGAATGGTTCTAGATGGAGGTTGTCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTCCTGCATGTTTTTAGGAATGGTTCTAGATGGAGGTTGTCTTA  646

seq1  AGAAACCTTCCTTCCCTGTTGTGGGCAGTCCCTCAGATGATCCGCTGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTCCTTCCCTGTTGTGGGCAGTCCCTCAGATGATCCGCTGTGC  696

seq1  TTATAGATTCTCAGAGTCAGTTTGCAATCTATATTCTGTTTGTTTGTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATTCTCAGAGTCAGTTTGCAATCTATATTCTGTTTGTTTGTTTC  746

seq1  TTTTTTATAATTTATTTTTACTTTATGTGCATTGGTGTTCTGCCTGCGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAATTTATTTTTACTTTATGTGCATTGGTGTTCTGCCTGCGTG  796

seq1  TCTGTCTGTGTGAGGGCATCAGATCCCCTGGAACTGGAGTTACAGGCAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTGAGGGCATCAGATCCCCTGGAACTGGAGTTACAGGCAGG  846

seq1  TGTGAGCTGCCACGTGGGTGCTGGGAATTGAACCCAGGTCCTTTGGAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCCACGTGGGTGCTGGGAATTGAACCCAGGTCCTTTGGAAGA  896

seq1  ACAGCCAGTGTTCTTAACTGCTGAGCCATCTCTCCAGCCCCCCTCCCTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGTGTTCTTAACTGCTGAGCCATCTCTCCAGCCCCCCTCCCTCA  946

seq1  TATTCTGCTTTTAGGTAATAATTTAGATGTTCCATCTTCTTGTGTGAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCTTTTAGGTAATAATTTAGATGTTCCATCTTCTTGTGTGAAAG  996

seq1  TGCTGTGACTCCCTTGCTTGCCTTCCTGCAAGTGAAGGTGAAAGCAGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGACTCCCTTGCTTGCCTTCCTGCAAGTGAAGGTGAAAGCAGAGA  1046

seq1  GGACAGGGCACACTGCGCCCTTTCCTTTGTAAGAAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGCACACTGCGCCCTTTCCTTTGTAAGAAGAATTC  1087