BAC Information

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BAC

Clone NameB6Ng01-300J20
Chromosome13 (Build37)10 (Build37)
Map Location 64,656,040 - 64,656,22051,007,350 - 51,008,498
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
Downstream genePpia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300J20.bB6Ng01-300J20.g
ACCGA095147GA095148
length9521,140
definitionB6Ng01-300J20.b B6Ng01-300J20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,656,040 - 64,656,220)(51,007,350 - 51,008,498)
sequence
gaattctccaaagatgaagctcaaatgaccgagaaacacttaactattca
acatccttagccaacagagaaacacaaatcaagactactttgaaatttca
tcttacagccatcagaatggataacatcaattaaacaagtggtagtttgt
gctggtgaggatgtggagcaaagggaacacttcctcattgctggtgggag
tgcaaaccaccattgaaatcagtatgttctttcttcaggaagatggaaat
tgagccacctcaaaagctagtattatcactcttggatattatatctaaag
gacactacatctggtaagatgagatatttgttcaaccacattcattgcta
tttggttcataatagtcagaaattggaaacaacctaaatgtccctcaaca
aatgactggataaagaaaatgtggtacacagtggatattattcaattatt
taaaaatgctcagcatccttaatcatcagagaaatgcaaatcaaaacaac
cctgagattccatctcacaccagtcagaatggctaagatcaaaaattcag
gtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccat
tgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggtg
gttcctcagaaaattggacatagtactaccggaggatcccgcaatacctc
tcctgggcatatatccagaagatgtcccaaccggtaagaaggacacatgc
tccactatgttcatagcagccttatttataatagccagaagctggaaaga
acccagatgcccctcaacagaggaatggatacaaaaaaatgtggtacatt
ttacacaatggaagtactactcagctattaaaaaagaatgaatttatgaa
atttctagcgcaaatggatggacctggagggcatcatcctgagtgaggta
ac
gaattcagtgcatcagagctcctgctaacacacacaagatgtagggcagg
tctctggatcaggaattttgaatactaagcagcaatgaatgcatgaaata
aatcaaatgggagaatagtgaaaatgcttcatgcttactcttcagcaagc
cagatttaaaaagggagcctggctcccctcaactatttctgtgtgtaatt
tttttttaggaattataactttttaaaaatattaagaaaatatacacaag
gagagtgctggaggaaagaagagaacctccttttcttgagtctctctgct
cagttgttagtaaaacaagctgctgtgtatcatctgtttcgtgatgggca
aaatatgattgagatcaaaaataatcaaagtacacctggttattatttgt
aaagacttaacagtaagtttttaatgattaatttatctgccacataacat
ttaatagatcatggaaacatcaagggaggaatgtggttctgcatctctaa
aacctccttcctgggctcagaatggtaataggcgtggaaggcgtcattag
tcttgttaggggcttgttcctagaggaatctctctgcattactttttaga
gggaaggtcaaggaagccaccccctgggactcccctgcaggatacaacta
acacacgcataaactgtatggaaatggctaaattatctctactgagacct
tggtctttcgcatcaatcaagtccttctgaactagtaaaacagataagca
ccctgctggcaaaagtgttactctccttatgctcctcatgactggcacta
caaatttaacaataaacaggcagttatttgtcttacctctttaaaaaaca
aaataagtgtgctgaaagtcctactgctgcatggacattttttttttttt
taagcgggagcagatctaagaaagaattaagtggattctgtgtcactctt
ttcctcccccaaagaatctttgtccaggattcagttcttaactgccacct
gagccacatgagaagtgatgtgatctgacagccaaaaacaaagccaatag
atcagactgcttttagggtggatgagcaaatttatcctcttcgttccagc
tttccagagaggcagcatgtccaagcctcattctgaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64656040_64656220
seq2: B6Ng01-300J20.b_812_997

seq1  CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCAAGATGTCCCTCA  50
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA  50

seq1  ACAGAGGAATGGATAC-CAAAAATGTGGTACA-TTTACACGATGG-AGTA  97
      ||||||||||||||||  |||||||||||||| ||||||| |||| ||||
seq2  ACAGAGGAATGGATACAAAAAAATGTGGTACATTTTACACAATGGAAGTA  100

seq1  CTACTCAGCTATT-AAAAACAATGAATTTATGAAA-TTCTTGGGCAAATG  145
      ||||||||||||| ||||| ||||||||||||||| |||| | |||||||
seq2  CTACTCAGCTATTAAAAAAGAATGAATTTATGAAATTTCTAGCGCAAATG  150

seq1  GATGTATCTGGAGGGTATCATCCTGAGTGAGGTAAC  181
      |||| | |||||||| ||||||||||||||||||||
seq2  GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC  186

seq1: chr10_51007350_51008498
seq2: B6Ng01-300J20.g_67_1206 (reverse)

seq1  AGGTGTCAGAATGAAGCTTTGACATGGGCTGCCCTCTCT-GAAAGCTGGG  49
      |||| ||||||||| |||| |||||  |||| ||||||| ||||||||| 
seq2  AGGT-TCAGAATGAGGCTTGGACAT--GCTG-CCTCTCTGGAAAGCTGGA  46

seq1  ACAGAAGAGGATAAATTTGCTCACTCCACCCTAAAAAGCAGTCTGGATTC  99
      || |||||||||||||||||||| |||||||| ||||||||||| |||  
seq2  AC-GAAGAGGATAAATTTGCTCA-TCCACCCT-AAAAGCAGTCT-GAT--  90

seq1  CTATTTGCTTTGTTTTGGCTTGTCAGATTCACATCACCTTCTCCATGT-G  148
      ||||| |||||||||| |  ||||||| |||||||| ||||| ||||| |
seq2  CTATTGGCTTTGTTTTTGGCTGTCAGA-TCACATCA-CTTCT-CATGTGG  137

seq1  CTCAGGTGGCAGTTA--GACTGAATCCTGGACAAAGAATCTTTGGGGGAG  196
      |||||||||||||||   ||||||||||||||||||| ||||||||||||
seq2  CTCAGGTGGCAGTTAAGAACTGAATCCTGGACAAAGATTCTTTGGGGGAG  187

seq1  GAAAAGAGTGACACAGAATCCACTTAATTCTTTCTTAGATCTGCTCCCGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTGACACAGAATCCACTTAATTCTTTCTTAGATCTGCTCCCGC  237

seq1  TTAAAAAAAAAAAAAATGTCCATGCAGCAGTAGGACTTTCAGCACACTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAATGTCCATGCAGCAGTAGGACTTTCAGCACACTTA  287

seq1  TTTTGTTTTTTAAAGAGGTAAGACAAATAACTGCCTGTTTATTGTTAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTAAAGAGGTAAGACAAATAACTGCCTGTTTATTGTTAAAT  337

seq1  TTGTAGTGCCAGTCATGAGGAGCATAAGGAGAGTAACACTTTTGCCAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGCCAGTCATGAGGAGCATAAGGAGAGTAACACTTTTGCCAGCA  387

seq1  GGGTGCTTATCTGTTTTACTAGTTCAGAAGGACTTGATTGATGCGAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTATCTGTTTTACTAGTTCAGAAGGACTTGATTGATGCGAAAGA  437

seq1  CCAAGGTCTCAGTAGAGATAATTTAGCCATTTCCATACAGTTTATGCGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCTCAGTAGAGATAATTTAGCCATTTCCATACAGTTTATGCGTG  487

seq1  TGTTAGTTGTATCCTGCAGGGGAGTCCCAGGGGGTGGCTTCCTTGACCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTGTATCCTGCAGGGGAGTCCCAGGGGGTGGCTTCCTTGACCTT  537

seq1  CCCTCTAAAAAGTAATGCAGAGAGATTCCTCTAGGAACAAGCCCCTAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAAAAGTAATGCAGAGAGATTCCTCTAGGAACAAGCCCCTAACA  587

seq1  AGACTAATGACGCCTTCCACGCCTATTACCATTCTGAGCCCAGGAAGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATGACGCCTTCCACGCCTATTACCATTCTGAGCCCAGGAAGGAG  637

seq1  GTTTTAGAGATGCAGAACCACATTCCTCCCTTGATGTTTCCATGATCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAGATGCAGAACCACATTCCTCCCTTGATGTTTCCATGATCTAT  687

seq1  TAAATGTTATGTGGCAGATAAATTAATCATTAAAAACTTACTGTTAAGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTATGTGGCAGATAAATTAATCATTAAAAACTTACTGTTAAGTC  737

seq1  TTTACAAATAATAACCAGGTGTACTTTGATTATTTTTGATCTCAATCATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATAATAACCAGGTGTACTTTGATTATTTTTGATCTCAATCATA  787

seq1  TTTTGCCCATCACGAAACAGATGATACACAGCAGCTTGTTTTACTAACAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCATCACGAAACAGATGATACACAGCAGCTTGTTTTACTAACAA  837

seq1  CTGAGCAGAGAGACTCAAGAAAAGGAGGTTCTCTTCTTTCCTCCAGCACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGAGAGACTCAAGAAAAGGAGGTTCTCTTCTTTCCTCCAGCACT  887

seq1  CTCCTTGTGTATATTTTCTTAATATTTTTAAAAAGTTATAATTCCTAAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTGTATATTTTCTTAATATTTTTAAAAAGTTATAATTCCTAAAA  937

seq1  AAAAATTACACACAGAAATAGTTGAGGGGAGCCAGGCTCCCTTTTTAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTACACACAGAAATAGTTGAGGGGAGCCAGGCTCCCTTTTTAAAT  987

seq1  CTGGCTTGCTGAAGAGTAAGCATGAAGCATTTTCACTATTCTCCCATTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGCTGAAGAGTAAGCATGAAGCATTTTCACTATTCTCCCATTTG  1037

seq1  ATTTATTTCATGCATTCATTGCTGCTTAGTATTCAAAATTCCTGATCCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCATGCATTCATTGCTGCTTAGTATTCAAAATTCCTGATCCAG  1087

seq1  AGACCTGCCCTACATCTTGTGTGTGTTAGCAGGAGCTCTGATGCACTGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCCCTACATCTTGTGTGTGTTAGCAGGAGCTCTGATGCACTGAA  1137

seq1  TTC  1149
      |||
seq2  TTC  1140