BAC Information

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BAC

Clone NameB6Ng01-300M24
Chromosome10 (Build37)
Map Location 111,072,807 - 111,241,501
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
Downstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300M24.bB6Ng01-300M24.g
ACCGA095292GA095293
length1,0961,105
definitionB6Ng01-300M24.b B6Ng01-300M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,240,386 - 111,241,501)(111,072,807 - 111,073,912)
sequence
gaattcttgtgtatgatttaggccccaataaaaatttaataagatgcaca
ccataggaccacatttcttacccattcttcaggaataaaagagcttacac
aaatggtcagaaatcagggaatattatcacttaaagtggcttgaaaatgt
tgcaaataacttaaaatctaatgaaaagtaatagaatggcaagggtttct
ttttgaaaagccgtactatcctattttttgtgtatgaatgtttttctgca
tgttcagcatatgtaagcttaataccaactgaggttagaggagggagtca
gataccctggtgctggagttaaaggtggttatggcttccatgtgcgtgcc
aagaactaaacttaggttctcaaaattgaaattgggtcttctactaaaag
agagggtcaggactgtgaacatgtgaaccggaagtgatctgtcattagaa
caacttcagagggataaacttgaacatttgaaaggtagaaaggaagaaaa
atgtgggcacagctctatttatctgtttatctagcctgagtgcaccttag
acaaagggttgttgtctgtggcatcgtttttttttttttttttttctctc
tctctctctctggaaaggaagtgaaggtatgaataaagaatgatgttttt
gttcagtcagtgactaagttcaggcattcaggccaatggatatccttagg
tggagaacaatgtactttcctccgagtcctttaaaagtcaagaaaacaga
aaagaataacttctccctccgtgactaacaggttcacagaatacctccga
acacctgcatagacagcctgggggcttcagctccgttcatgcgaaccttt
ggcaaatctaggccagtgattcacaacctttctcatgtttcgacccttta
atacaagtttgtcatgttgtgtgacaaccgcccccccaaccataaaatac
ttctgtgctacttataactgtagtttgctactgtatgaatctatgtaata
ttttgagaatatagttgcagaggtgcgaactgctgtgagaactgctgttc
taatgctctgaccctcccctccccataacttattatgatagcagaa
gaattctagatgaaggtggaacatggtccacaggtgtggataggtatgag
ccactaatgtgttagtcagggttctctggaaaaaaaccaaaacaacgaca
acaaaaaaacaaaacaccaccaccaccaacaaaagatcaatgtctgatag
tatcatggtggttgacattataaagaattggctcatggttggtttcatgc
agaaaataattgagatctgtgtgggtcggtaaaacagccgttctggatta
aaggcttgagatctcggaagagcttggatctcagtttaaatcccagaagc
agagaagagcaagtgagcatcattgaaagctctcagtgtgaagcctgaac
ttcagatccgtgtggttcacaggggaggcaactgtcctatatcatggtac
gggtggaaaaatagtctgtagggaaaaagtataagaatgatctcacctgt
ccctcccgcacaccccgcccccagtgtcttctcccagggatgggggtcca
atatttcacatattctctccagttcttgtgacgcagaagaggtagccttc
ttgacgctgagttagcctgaaagtagatagctttctcattagtcatgctg
tactctgaggcaatgagaatcccttttactcacgattcacacaggaccct
gaaccctccagctcctcctccatcgtcatcacccccatcctctattccgg
aacccaaaatcctcggtgtcctctcttctctgggcgccccctacaggcgg
accgtgtccaactgtcttcctttcccacagagaacggttcggttcccact
gtggtggagtcgatagttctattatcagttccgtcttcggcacctaaagg
ggtgaggagacacaggtacctgctatctcggatcctcagatgctctgagg
aaccagctttgattcccctggcatgggaatctgacaaagataaaacagct
ttgtctgtgcgtctaaatacccagctccaaggggatcaatgtcactccga
tactcttgtctctttgttctaaccagtcatcagcgattggctggtgtctc
ctctcacccaatgggcttggactgcctcactcatctttctgagtcattat
tcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111240386_111241501
seq2: B6Ng01-300M24.b_47_1142 (reverse)

seq1  TTCTGCTATCATATATAAAGTTATGGGGGAGGGGAGGGTCAGAGCATTTA  50
      ||||||||||||| || ||||||| ||||||||||||||||||||| |||
seq2  TTCTGCTATCATA-AT-AAGTTAT-GGGGAGGGGAGGGTCAGAGCA-TTA  46

seq1  GAACAGCAGTTCTCAACAGCAGTTCGCAACCCCTCTGGCAAACCTATATC  100
      |||||||||||||| |||||||||||||   ||||| ||||  |||||| 
seq2  GAACAGCAGTTCTC-ACAGCAGTTCGCA---CCTCT-GCAA--CTATAT-  88

seq1  TCCAAAAATATTTACATTAAGATTCATTAACAGTAGCAAAACTACAGTTA  150
      ||  |||||| ||||||  ||||||||  |||||||| ||||||||||||
seq2  TCTCAAAATA-TTACAT--AGATTCAT--ACAGTAGC-AAACTACAGTTA  132

seq1  TAAAGTAGCAACAGAAGTATTTTATGGTTGGGGGGGCGGTTGTCACCACA  200
      | ||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  T-AAGTAGC-ACAGAAGTATTTTATGGTTGGGGGGGCGGTTGTCA-CACA  179

seq1  ACATGACAAAC-TGTATTAAAGGGTCGAAACATGAGAAAGGTTGTGAATC  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAAACTTGTATTAAAGGGTCGAAACATGAGAAAGGTTGTGAATC  229

seq1  ACTGGCCTAGATTTGCCAAAGGTTCGCATGAACGGAGCTGAAGCCCCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTAGATTTGCCAAAGGTTCGCATGAACGGAGCTGAAGCCCCCAG  279

seq1  GCTGTCTATGCAGGTGTTCGGAGGTATTCTGTGAACCTGTTAGTCACGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTATGCAGGTGTTCGGAGGTATTCTGTGAACCTGTTAGTCACGGA  329

seq1  GGGAGAAGTTATTCTTTTCTGTTTTCTTGACTTTTAAAGGACTCGGAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGTTATTCTTTTCTGTTTTCTTGACTTTTAAAGGACTCGGAGGA  379

seq1  AAGTACATTGTTCTCCACCTAAGGATATCCATTGGCCTGAATGCCTGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATTGTTCTCCACCTAAGGATATCCATTGGCCTGAATGCCTGAAC  429

seq1  TTAGTCACTGACTGAACAAAAACATCATTCTTTATTCATACCTTCACTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTGACTGAACAAAAACATCATTCTTTATTCATACCTTCACTTC  479

seq1  CTTTCCAGAGAGAGAGAGAGAGAAAAAAAAAAAAAAAAAAACGATGCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAGAGAGAGAGAGAGAAAAAAAAAAAAAAAAAAACGATGCCAC  529

seq1  AGACAACAACCCTTTGTCTAAGGTGCACTCAGGCTAGATAAACAGATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAACCCTTTGTCTAAGGTGCACTCAGGCTAGATAAACAGATAAA  579

seq1  TAGAGCTGTGCCCACATTTTTCTTCCTTTCTACCTTTCAAATGTTCAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGTGCCCACATTTTTCTTCCTTTCTACCTTTCAAATGTTCAAGT  629

seq1  TTATCCCTCTGAAGTTGTTCTAATGACAGATCACTTCCGGTTCACATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCTCTGAAGTTGTTCTAATGACAGATCACTTCCGGTTCACATGTT  679

seq1  CACAGTCCTGACCCTCTCTTTTAGTAGAAGACCCAATTTCAATTTTGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCTGACCCTCTCTTTTAGTAGAAGACCCAATTTCAATTTTGAGA  729

seq1  ACCTAAGTTTAGTTCTTGGCACGCACATGGAAGCCATAACCACCTTTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTTTAGTTCTTGGCACGCACATGGAAGCCATAACCACCTTTAAC  779

seq1  TCCAGCACCAGGGTATCTGACTCCCTCCTCTAACCTCAGTTGGTATTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACCAGGGTATCTGACTCCCTCCTCTAACCTCAGTTGGTATTAAG  829

seq1  CTTACATATGCTGAACATGCAGAAAAACATTCATACACAAAAAATAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATATGCTGAACATGCAGAAAAACATTCATACACAAAAAATAGGAT  879

seq1  AGTACGGCTTTTCAAAAAGAAACCCTTGCCATTCTATTACTTTTCATTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGGCTTTTCAAAAAGAAACCCTTGCCATTCTATTACTTTTCATTAG  929

seq1  ATTTTAAGTTATTTGCAACATTTTCAAGCCACTTTAAGTGATAATATTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTATTTGCAACATTTTCAAGCCACTTTAAGTGATAATATTCC  979

seq1  CTGATTTCTGACCATTTGTGTAAGCTCTTTTATTCCTGAAGAATGGGTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTGACCATTTGTGTAAGCTCTTTTATTCCTGAAGAATGGGTAA  1029

seq1  GAAATGTGGTCCTATGGTGTGCATCTTATTAAATTTTTATTGGGGCCTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGGTCCTATGGTGTGCATCTTATTAAATTTTTATTGGGGCCTAA  1079

seq1  ATCATACACAAGAATTC  1116
      |||||||||||||||||
seq2  ATCATACACAAGAATTC  1096

seq1: chr10_111072807_111073912
seq2: B6Ng01-300M24.g_67_1171

seq1  GAATTCTAGATGAAGGTGGAACATGGTCCACAGGTGTGGATAGGTATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATGAAGGTGGAACATGGTCCACAGGTGTGGATAGGTATGAG  50

seq1  CCACTAATGTGTTAGTCAGGGTTCTCTGGAAAAAAACCAAAACAACGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATGTGTTAGTCAGGGTTCTCTGGAAAAAAACCAAAACAACGACA  100

seq1  ACAAAAAAACAAAACACCACCACCACCAACAAAAGATCAATGTCTGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACAAAACACCACCACCACCAACAAAAGATCAATGTCTGATAG  150

seq1  TATCATGGTGGTTGACATTATAAAGAATTGGCTCATGGTTGGTTTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGTGGTTGACATTATAAAGAATTGGCTCATGGTTGGTTTCATGC  200

seq1  AGAAAATAATTGAGATCTGTGTGGGTCGGTAAAACAGCCGTTCTGGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAATTGAGATCTGTGTGGGTCGGTAAAACAGCCGTTCTGGATTA  250

seq1  AAGGCTTGAGATCTCGGAAGAGCTTGGATCTCAGTTTAAATCCCAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGAGATCTCGGAAGAGCTTGGATCTCAGTTTAAATCCCAGAAGC  300

seq1  AGAGAAGAGCAAGTGAGCATCATTGAAAGCTCTCAGTGTGAAGCCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGCAAGTGAGCATCATTGAAAGCTCTCAGTGTGAAGCCTGAAC  350

seq1  TTCAGATCCGTGTGGTTCACAGGGGAGGCAACTGTCCTATATCATGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCCGTGTGGTTCACAGGGGAGGCAACTGTCCTATATCATGGTAC  400

seq1  GGGTGGAAAAATAGTCTGTAGGGAAAAAGTATAAGAATGATCTCACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAAAATAGTCTGTAGGGAAAAAGTATAAGAATGATCTCACCTGT  450

seq1  CCCTCCCGCACACCCCGCCCCCAGTGTCTTCTCCCAGGGATGGGGGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCGCACACCCCGCCCCCAGTGTCTTCTCCCAGGGATGGGGGTCCA  500

seq1  ATATTTCACATATTCTCTCCAGTTCTTGTGACGCAGAAGAGGTAGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCACATATTCTCTCCAGTTCTTGTGACGCAGAAGAGGTAGCCTTC  550

seq1  TTGACGCTGAGTTAGCCTGAAAGTAGATAGCTTTCTCATTAGTCATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGCTGAGTTAGCCTGAAAGTAGATAGCTTTCTCATTAGTCATGCTG  600

seq1  TACTCTGAGGCAATGAGAATCCCTTTTACTCACGATTCACACAGGACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAGGCAATGAGAATCCCTTTTACTCACGATTCACACAGGACCCT  650

seq1  GAACCCTCCAGCTCCTCCTCCATCGTCATCACCCCCATCCTCTATTCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTCCAGCTCCTCCTCCATCGTCATCACCCCCATCCTCTATTCCGG  700

seq1  AACCCAAAATCCTCGGTGTCCTCTCTTCTCTGGGCGCCCCCTACAGGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAATCCTCGGTGTCCTCTCTTCTCTGGGCGCCCCCTACAGGCGG  750

seq1  ACCGTGTCCAACTGTCTTCCTTTCCCACAGAGAACGGTTCGGTTCCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTCCAACTGTCTTCCTTTCCCACAGAGAACGGTTCGGTTCCCACT  800

seq1  GTGGTGGAGTCGATAGTTCTATTATCAGTTCCGTCTTCGGCACCT-AAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGGTGGAGTCGATAGTTCTATTATCAGTTCCGTCTTCGGCACCTAAAGG  850

seq1  GGTGAGGAGACACAGGTACCTGCTATCTCGGATCCTCAGATGCTCTGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAGACACAGGTACCTGCTATCTCGGATCCTCAGATGCTCTGAGG  900

seq1  AACCAGCTTTGATTCCCCTGGCATGGGAATCTGACAAAGATAAAACAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTTTGATTCCCCTGGCATGGGAATCTGACAAAGATAAAACAGCT  950

seq1  TTGTCTGTGCGTCTAAATACCCAGCTCCAAGGGGGATCAATGTCACCTCC  999
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TTGTCTGTGCGTCTAAATACCCAGCTCCAA-GGGGATCAATGTCA-CTCC  998

seq1  GATACTC-TGTCTCTTTGTTCTAACCCAGTCATCAGCGATTGGCTGGTGT  1048
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GATACTCTTGTCTCTTTGTTCTAA-CCAGTCATCAGCGATTGGCTGGTGT  1047

seq1  CTTCTCTCACCC-ATGGGCTTGGACCTGCTTCACTCATC-TTCTGAGTCC  1096
      || ||||||||| ||||||||||| |||| ||||||||| ||||||||| 
seq2  CTCCTCTCACCCAATGGGCTTGGA-CTGCCTCACTCATCTTTCTGAGTCA  1096

seq1  TTATCTCTTC  1106
      |||| |||||
seq2  TTAT-TCTTC  1105