BAC Information

Click to search

BAC

Clone NameB6Ng01-301F20
Chromosome10 (Build37)
Map Location 37,088,594 - 37,089,718
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301F20.bB6Ng01-301F20.g
ACCGA095694GA095695
length1,111962
definitionB6Ng01-301F20.b B6Ng01-301F20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacactttataagtgtggcaccactgtcaacattgcttcatgatc
cagccagactcagacaataagaaacttagagccaaacaatagttatttgc
aagcaatgagtttcccagcaaattaagcatgcactttcacaagaatgctc
tggaatctaggcaagagccatgaggaccaccaaaaaggtctccagagtga
ccaatggcagctattgtcccctgaatgccaacggaacttacttccccaga
agaggagacgagtgaccctaagaccaagttactatggaatgtcccaaagg
tccctgcccaatcaagggcctcatcctgagctgagacagccaaagttatc
tctcacttctctgagagcaggcaggcaacatagaaggcctgcttgctcat
attatgaaatccaaggctggggtttccttagcatagagaagaagggccat
cctttcacacctgcagtctttgctgttggctgacaatatgtactgtgcta
attggcttcccagatgtctctttcagaaaggggaattatagactcaggtt
gggccaaagcccagtgtcatgagtgtggactgtggacttagggtcctttc
tgtcctccttcattatgtggtgagtagcgaaccaggtgccagatgcgtca
cccctgacacagactatcctcaaagcactacatgttccacagatgcatcc
ctacataacagttcctgaaaatagaacagtgacaaacgtagtgtggagca
gcctagagtactttgcaatcgggaaaggaattaaacagcattcattcttt
accacataggcctatccagagtatcctaatggggtacacaaagatgatgc
tttatcttcattcaaatttggaattactgacctatttaatggttctgcca
tttccccaccctccaagaagcctgagccaagagatattttacacactgga
atgacaagacagaaaatgctctccctttgcagactggtctcacttgcagc
catgtgatcatgtctcagatattatcactatgcatctcgtttctcaatat
atatatagagctataatagccgcaccgcagacccatacacggatgaatag
aatactcttga

gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacattcttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggctaggatgtggagaaagaggaacactcccccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggagtatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatgggtacaaaaaacgtggtacatttacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtattcactgataagtggatattagcccagaaac
ttagtatacctgagatataagatacaatttgcaaaacacatgaaactgaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatccagagactgccatatccagggatccatcccataatt
agcctccaaacaatgacaccattgcatacactagcaagcgtttgctgaaa
ggaccctgatatagctgtctcttgtgagactaggcccgggcctagcaaac
acataagtggatgctcacagtcagctatggatggatcacagggcccccaa
tggagtagctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_37088594_37089718
seq2: B6Ng01-301F20.b_43_1153 (reverse)

seq1  TCAAGAGTTATCTAATTTCATCTGTGTAATGGTTCTGCGTTGCGGCTATT  50
      ||||||||  ||||  |||||| |||| |||| |||||| ||||||||||
seq2  TCAAGAGTATTCTA--TTCATCCGTGT-ATGGGTCTGCGGTGCGGCTATT  47

seq1  ATTAGCTCTATTATATATATGAGGAAACGGAGATGCATAGTGATTAAATA  100
      | |||||||| |||||||||   ||||| |||||||||||||||  ||||
seq2  A-TAGCTCTA-TATATATATTGAGAAAC-GAGATGCATAGTGAT--AATA  92

seq1  TCTGAGACATGATCACATGGCTGGCAAGTGGAAGAACCAGTCTGCAAAGG  150
      |||||||||||||||||||||| |||||||  || |||||||||||||||
seq2  TCTGAGACATGATCACATGGCT-GCAAGTG--AG-ACCAGTCTGCAAAGG  138

seq1  GAGAGCATTTTCTGTCTTGTTCATTCCAGTGTGTAAAATATCTCTTGGCT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAGCATTTTCTGTCTTG-TCATTCCAGTGTGTAAAATATCTCTTGGCT  187

seq1  CAGGCTTCTTTGGAGGGTGGGGAAATGGCAGAACCATTAAATAGGTCAGT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTC-TTGGAGGGTGGGGAAATGGCAGAACCATTAAATAGGTCAGT  236

seq1  AATTCCAAATTTGAATGAAGATAAAGCATCATCTTTGTGTACCCCATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAATTTGAATGAAGATAAAGCATCATCTTTGTGTACCCCATTAG  286

seq1  GATACTCTGGATAGGCCTATGTGGTAAAGAATGAATGCTGTTTAATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCTGGATAGGCCTATGTGGTAAAGAATGAATGCTGTTTAATTCCT  336

seq1  TTCCCGATTGCAAAGTACTCTAGGCTGCTCCACACTACGTTTGTCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGATTGCAAAGTACTCTAGGCTGCTCCACACTACGTTTGTCACTGT  386

seq1  TCTATTTTCAGGAACTGTTATGTAGGGATGCATCTGTGGAACATGTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCAGGAACTGTTATGTAGGGATGCATCTGTGGAACATGTAGTG  436

seq1  CTTTGAGGATAGTCTGTGTCAGGGGTGACGCATCTGGCACCTGGTTCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGATAGTCTGTGTCAGGGGTGACGCATCTGGCACCTGGTTCGCT  486

seq1  ACTCACCACATAATGAAGGAGGACAGAAAGGACCCTAAGTCCACAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCACATAATGAAGGAGGACAGAAAGGACCCTAAGTCCACAGTCCA  536

seq1  CACTCATGACACTGGGCTTTGGCCCAACCTGAGTCTATAATTCCCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGACACTGGGCTTTGGCCCAACCTGAGTCTATAATTCCCCTTTC  586

seq1  TGAAAGAGACATCTGGGAAGCCAATTAGCACAGTACATATTGTCAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGACATCTGGGAAGCCAATTAGCACAGTACATATTGTCAGCCAA  636

seq1  CAGCAAAGACTGCAGGTGTGAAAGGATGGCCCTTCTTCTCTATGCTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGACTGCAGGTGTGAAAGGATGGCCCTTCTTCTCTATGCTAAGG  686

seq1  AAACCCCAGCCTTGGATTTCATAATATGAGCAAGCAGGCCTTCTATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAGCCTTGGATTTCATAATATGAGCAAGCAGGCCTTCTATGTTG  736

seq1  CCTGCCTGCTCTCAGAGAAGTGAGAGATAACTTTGGCTGTCTCAGCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGCTCTCAGAGAAGTGAGAGATAACTTTGGCTGTCTCAGCTCAG  786

seq1  GATGAGGCCCTTGATTGGGCAGGGACCTTTGGGACATTCCATAGTAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCCCTTGATTGGGCAGGGACCTTTGGGACATTCCATAGTAACTT  836

seq1  GGTCTTAGGGTCACTCGTCTCCTCTTCTGGGGAAGTAAGTTCCGTTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGGGTCACTCGTCTCCTCTTCTGGGGAAGTAAGTTCCGTTGGCA  886

seq1  TTCAGGGGACAATAGCTGCCATTGGTCACTCTGGAGACCTTTTTGGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGACAATAGCTGCCATTGGTCACTCTGGAGACCTTTTTGGTGGT  936

seq1  CCTCATGGCTCTTGCCTAGATTCCAGAGCATTCTTGTGAAAGTGCATGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGCTCTTGCCTAGATTCCAGAGCATTCTTGTGAAAGTGCATGCT  986

seq1  TAATTTGCTGGGAAACTCATTGCTTGCAAATAACTATTGTTTGGCTCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTGGGAAACTCATTGCTTGCAAATAACTATTGTTTGGCTCTAA  1036

seq1  GTTTCTTATTGTCTGAGTCTGGCTGGATCATGAAGCAATGTTGACAGTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATTGTCTGAGTCTGGCTGGATCATGAAGCAATGTTGACAGTGG  1086

seq1  TGCCACACTTATAAAGTGTGAATTC  1125
      |||||||||||||||||||||||||
seq2  TGCCACACTTATAAAGTGTGAATTC  1111


| Home | SequenceCutter | Blast | Download |