BAC Information

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BAC

Clone NameB6Ng01-305B02
Chromosome10 (Build37)
Map Location 57,097,671 - 57,237,557
singlet/doubletdoublet
Overlap geneLOC668363, Hsf2, Serinc1
Upstream geneGja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742
Downstream geneLOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305B02.bB6Ng01-305B02.g
ACCGA098451GA098452
length1,1571,045
definitionB6Ng01-305B02.b B6Ng01-305B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,097,671 - 57,098,681)(57,236,527 - 57,237,557)
sequence
gaattcttggtttagttctataccccatttttgattggattgtttgggtt
tttttttttttgagtttagtttcttcagttctttatatattttggatatt
agccctctatcagatgtggggttagtgaagtttttttcccaatctatagg
ttgcttatttgtcatattgactatgtcttttgccttaagaaacttttcag
tttcatcaggtcccatttatcaattgttgatattaaagcatgagccattg
gagttttgtttaggaaatttccacctgtgccaatcagttcaaggctcttt
cacactctctcttctattagattcagtgtatttgattttatgtgacggtc
ctagattcacttggacgtgagctttgtgcaaggtgacaagtatggatcta
ttttcacttttctatatattgagttagaccagcaccatttattgaaaatg
ctttctttttttccattgtatatatttggcttcttttgtcaaagtccaag
tgtccgtaagtgtgtggttttatttcttggtcttcaattctattccattg
atcgacctatctctataccaatctgtctctataccaatatcatgcagttt
ttatcactattgttctatagtatagcttgaggtcaattaagaaaagcatt
taaactgagatgtacaactttagaaacttagtataacaaataaagtataa
tttctttattttctcctcaagaagatgaagaggagaaaaatgagtagaag
aacggagaaggaaaaacataaggaagaaaataaagactcagtctttcaga
ggaaagcatttgggctgagcatgcgctgcctgtaacaggaccctctgctt
attcaattactttatagttcttgacagtacaaagaacatagacattcatc
ttctcacaaaattgtaagaagcttatttgcctcagaaacaaaactatcat
ttccatgcacaccaaagaagcagagttgtctctacaaatctaacacagca
gaaaccaggtactctgaggatatgggttttggtggctatatatcttgaat
tgggtttcttctcacacatacagaataacacaactcttgattcaacttat
ccctcctcagcgctggccctgactgacctacctgtgataatctataagaa
atttttt
gaattccaggaaagccaggactacacagagaaatctgtgtgttaaaaaaa
caaaagcaaaaataaatatgagggtttgtgtgtgtgtacaaaagtcagct
gactttaggatctagttccttccccatctgtcaaatcttagaaggggagg
gtggtgaggtagagaagggaggcccatcaacattgcaaccatgtacagaa
tagtcagatgagactttactcaatcctcatctattcctatttaataacat
gtacagattgcataccttgcttcgaactatgtgaaagatctgctgcagca
gtatggagggtatggcaggaccatcatgattccaggagctactgcacatt
atcacaaactccatacaaaggaagcttaaatgaaggggcctagtagcttg
atagcttagtaacacaagccattaacctacaatcactttgacttttcctc
atattgtaggtatgagccttctcgtgagatgaaaagtcagtggacagcag
tctgggtgaaaatctcttccagttggattggccttgtgctgtacgtgtgg
acactagtggcaccacttgttcttacaaatcgggattttgactgaatggg
atgtctggcatgagtcccactttggccattgtctatttgacagtaacagt
atttcccaatttttgtaaagttgtatgtgctgttgtgtaagtgtaacact
gtttttctcttgcatgaaatagatttactctgccaattttatccatgttc
ttgctaaagtctatttgatgatatgaattggaaagggagaattttgaata
tgggtgagaaattgggaaaaatggacatttgatagggcatattcatctgc
tttgtgtacatatgggtattaaaactgaaaacaaaatattcttgaacatt
tgggtttcaaaatttgtgttaagcacttattttagaacattaattaagtg
tatggctgccctttgaaatacttgaatgtgttgttgttgcctttacagag
gactacaagtataacgcaaattgcctgttttaaaatatgtaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_57097671_57098681
seq2: B6Ng01-305B02.b_185_1202

seq1  CAATCTATAGGTTGCTTATTTGTCATATTGACTATGTCTTTTGCCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATAGGTTGCTTATTTGTCATATTGACTATGTCTTTTGCCTTAAG  50

seq1  AAACTTTTCAGTTTCATCAGGTCCCATTTATCAATTGTTGATATTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCAGTTTCATCAGGTCCCATTTATCAATTGTTGATATTAAAGC  100

seq1  ATGAGCCATTGGAGTTTTGTTTAGGAAATTTCCACCTGTGCCAATCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCATTGGAGTTTTGTTTAGGAAATTTCCACCTGTGCCAATCAGTT  150

seq1  CAAGGCTCTTTCACACTCTCTCTTCTATTAGATTCAGTGTATTTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTTTCACACTCTCTCTTCTATTAGATTCAGTGTATTTGATTTT  200

seq1  ATGTGACGGTCCTAGATTCACTTGGACGTGAGCTTTGTGCAAGGTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACGGTCCTAGATTCACTTGGACGTGAGCTTTGTGCAAGGTGACAA  250

seq1  GTATGGATCTATTTTCACTTTTCTATATATTGAGTTAGACCAGCACCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATCTATTTTCACTTTTCTATATATTGAGTTAGACCAGCACCATT  300

seq1  TATTGAAAATGCTTTCTTTTTTTCCATTGTATATATTTGGCTTCTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAATGCTTTCTTTTTTTCCATTGTATATATTTGGCTTCTTTTGT  350

seq1  CAAAGTCCAAGTGTCCGTAAGTGTGTGGTTTTATTTCTTGGTCTTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCAAGTGTCCGTAAGTGTGTGGTTTTATTTCTTGGTCTTCAATT  400

seq1  CTATTCCATTGATCGACCTATCTCTATACCAATCTGTCTCTATACCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCATTGATCGACCTATCTCTATACCAATCTGTCTCTATACCAATA  450

seq1  TCATGCAGTTTTTATCACTATTGTTCTATAGTATAGCTTGAGGTCAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGTTTTTATCACTATTGTTCTATAGTATAGCTTGAGGTCAATTA  500

seq1  AGAAAAGCATTTAAACTGAGATGTACAACTTTAGAAACTTAGTATAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCATTTAAACTGAGATGTACAACTTTAGAAACTTAGTATAACAA  550

seq1  ATAAAGTATAATTTCTTTATTTTCTCCTCAAGAAGATGAAGAGGAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATAATTTCTTTATTTTCTCCTCAAGAAGATGAAGAGGAGAAAA  600

seq1  ATGAGTAGAAGAACGGAGAAGGAAAAACATAAGGAAGAAAATAAAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGAAGAACGGAGAAGGAAAAACATAAGGAAGAAAATAAAGACTC  650

seq1  AGTCTTTCAGAGGAAAGCATTTGGGCTGAGCATGCGCTGCCTGTAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCAGAGGAAAGCATTTGGGCTGAGCATGCGCTGCCTGTAACAGG  700

seq1  ACCCTCTGCTTATTCAATTACTTTATAGTTCTTGACAGTACAAAGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCTTATTCAATTACTTTATAGTTCTTGACAGTACAAAGAACAT  750

seq1  AGACATTCATCTTCTCACAAAATTGTAAGAAGCTTATTTGCCTCAG-AAC  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGACATTCATCTTCTCACAAAATTGTAAGAAGCTTATTTGCCTCAGAAAC  800

seq1  AAAACTATCATTTCCATGCACACCAAAGAAGCAGAGTTGTCTCTACAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATCATTTCCATGCACACCAAAGAAGCAGAGTTGTCTCTACAAAT  850

seq1  CTAACACAGCAGAAACCAGGTACTCTGAGGATAT-GGTTTTGGTGGCTAT  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAACACAGCAGAAACCAGGTACTCTGAGGATATGGGTTTTGGTGGCTAT  900

seq1  TAATAATCTTGAATT-GGTTTCTTCTCACACATACAGA--TACAC-ACTC  944
        || |||||||||| ||||||||||||||||||||||   |||| ||||
seq2  --AT-ATCTTGAATTGGGTTTCTTCTCACACATACAGAATAACACAACTC  947

seq1  TTGTATCCACTTATCCCTCCTCAGCGCT-GCCCTGACTGACTTA-CTGTG  992
      |||  || |||||||||||||||||||| |||||||||||| || |||||
seq2  TTGATTCAACTTATCCCTCCTCAGCGCTGGCCCTGACTGACCTACCTGTG  997

seq1  ATAATCTATAAG--ATTTTTT  1011
      ||||||||||||  |||||||
seq2  ATAATCTATAAGAAATTTTTT  1018

seq1: chr10_57236527_57237557
seq2: B6Ng01-305B02.g_67_1111 (reverse)

seq1  TATTTACATAATTTTAAAACA-GCTATTTGCTTTATACTTGTAGTCCTCT  49
      ||||||||| ||||||||||| || |||||| ||||||||||||||||||
seq2  TATTTACAT-ATTTTAAAACAGGCAATTTGCGTTATACTTGTAGTCCTCT  49

seq1  GT-AAGGCAACAACAACACA-TCAAGTATTTCAAA-GGCAGCCATACACT  96
      || ||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  GTAAAGGCAACAACAACACATTCAAGTATTTCAAAGGGCAGCCATACACT  99

seq1  TAATTAATGTTTCTAAAATAAGTGC-TAACAC-AATTTTGAAACCCAAAT  144
      ||||||||| ||||||||||||||| |||||| |||||||||||||||||
seq2  TAATTAATG-TTCTAAAATAAGTGCTTAACACAAATTTTGAAACCCAAAT  148

seq1  G-TCAAGAATA-TTTGTTTTCAGTTTTAATA-CCATATGTACACAAAGCA  191
      | ||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GTTCAAGAATATTTTGTTTTCAGTTTTAATACCCATATGTACACAAAGCA  198

seq1  GATG-ATATG-CCTATC-AATGTCCATTTTTCCCAATTTCTCA-CCATAT  237
      |||| ||||| |||||| ||||||||||||||||||||||||| ||||||
seq2  GATGAATATGCCCTATCAAATGTCCATTTTTCCCAATTTCTCACCCATAT  248

seq1  TCAAAATTCTCCCTTTCCAATTCATATCATC-AATAGAC-TTAGCAAGAA  285
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TCAAAATTCTCCCTTTCCAATTCATATCATCAAATAGACTTTAGCAAGAA  298

seq1  CATGGATAAAATTGGCAGAGTAAATCTATTTCATGCAAGAGAAAAACAGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATAAAATTGGCAGAGTAAATCTATTTCATGCAAGAGAAAAACAGT  348

seq1  GTTACACTTACACAACAGCACATACAACTTTACAAAAATTGGG-AATACT  384
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTACACTTACACAACAGCACATACAACTTTACAAAAATTGGGAAATACT  398

seq1  GTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATGCCAGACATCCC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATGCCAGACATCCC  448

seq1  ATTCAGTCAAAATCCCGATTTGTAAGAACAAGTGGTGCCACTAGTGTCCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCAAAATCCCGATTTGTAAGAACAAGTGGTGCCACTAGTGTCCA  498

seq1  CACGTACAGCACAAGGCCAATCCAACTGGAAGAGATTTTCACCCAGACTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACAGCACAAGGCCAATCCAACTGGAAGAGATTTTCACCCAGACTG  548

seq1  CTGTCCACTGACTTTTCATCTCACGAGAAGGCTCATACCTACAATATGAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACTGACTTTTCATCTCACGAGAAGGCTCATACCTACAATATGAG  598

seq1  GAAAAGTCAAAGTGATTGTAGGTTAATGGCTTGTGTTACTAAGCTATCAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCAAAGTGATTGTAGGTTAATGGCTTGTGTTACTAAGCTATCAA  648

seq1  GCTACTAGGCCCCTTCATTTAAGCTTCCTTTGTATGGAGTTTGTGATAAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTAGGCCCCTTCATTTAAGCTTCCTTTGTATGGAGTTTGTGATAAT  698

seq1  GTGCAGTAGCTCCTGGAATCATGATGGTCCTGCCATACCCTCCATACTGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTAGCTCCTGGAATCATGATGGTCCTGCCATACCCTCCATACTGC  748

seq1  TGCAGCAGATCTTTCACATAGTTCGAAGCAAGGTATGCAATCTGTACATG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGATCTTTCACATAGTTCGAAGCAAGGTATGCAATCTGTACATG  798

seq1  TTATTAAATAGGAATAGATGAGGATTGAGTAAAGTCTCATCTGACTATTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATAGGAATAGATGAGGATTGAGTAAAGTCTCATCTGACTATTC  848

seq1  TGTACATGGTTGCAATGTTGATGGGCCTCCCTTCTCTACCTCACCACCCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGTTGCAATGTTGATGGGCCTCCCTTCTCTACCTCACCACCCT  898

seq1  CCCCTTCTAAGATTTGACAGATGGGGAAGGAACTAGATCCTAAAGTCAGC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTAAGATTTGACAGATGGGGAAGGAACTAGATCCTAAAGTCAGC  948

seq1  TGACTTTTGTACACACACACAAACCCTCATATTTATTTTTGCTTTTGTTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGTACACACACACAAACCCTCATATTTATTTTTGCTTTTGTTT  998

seq1  TTTTAACACACAGATTTCTCTGTGTAGTCCTGGCTTTCCTGGAATTC  1031
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACACACAGATTTCTCTGTGTAGTCCTGGCTTTCCTGGAATTC  1045