BAC Information

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BAC

Clone NameB6Ng01-306I21
Chromosome10 (Build37)
Map Location 3,241,714 - 3,390,589
singlet/doubletdoublet
Overlap geneOprm1, A130090K04Rik
Upstream geneCnksr3
Downstream geneLOC237252, LOC100041224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306I21.bB6Ng01-306I21.g
ACCGA099557GA099558
length1,0361,098
definitionB6Ng01-306I21.b B6Ng01-306I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,241,714 - 3,242,755)(3,389,477 - 3,390,589)
sequence
gaattccagggaaggaagctccttgtcattttgactctaggaatggttaa
ggcaaggcgacaaaataacgtgccttgtgtgagaactgggagaaaagcgg
gcaagatactgagaagcgtgtgcagacccttgatccattgtgactggaaa
gaggttgatgttgctccacagggcggttttggaattgttcacagagagac
catttaagagatttagatgtttcttcctcaagaaacagactagaggctct
agtttgtaattttgtatctagtgtattgaactttgtttcaaagaactctg
tgagatttgaaaagttggttgagcgggcagctgacacaacctggggctgt
agaagggacttgatcagttgcagctaagtgagagagagttgtcttttctt
ctctgaaaaaagcagaggaaagaaagttctttgaaggaggaagaagaccc
cacgtgggaccgtgaacatggccgatcaattccaggaggagtttatctct
tgtccccaggacagatccccagactatacacaatcctgacaagccacccc
cccccccaccacctccagggccctcatcctaacacatcacttctgcacaa
aatgccaggaaatgagatctgtttttaaatgtcttattatatctgaaaac
tggaaccccctaacaatgaaggctttgcctggggagccatgtctgagcag
atttggcacttgtatgctgcagagtctaagagaacagactgagtggggct
gattaggagggagagacatcctgggtagggagtggagagtcttaggaaga
ggttctaaatgtcattgcaggttctaacggaaaaggcaagttggctcaag
ggctcttcaattttagagcctgactagctctggaagtggggtctggtttc
ctcataccactggcaggcttgcagatgtctgggattattctttcagagat
tttcctcacacgttctcctgatgagaaaagacctgctagacgatttttcc
tgtaactcgtgggaacccactggctcttcagggctt

gaattctacctgcacccacttacaaatcaccccattgctaggtgaacttt
gaaaattgttatgatcctggaccagggccttgtgggaacaggggaagtac
aacttacttttttttcttgcattcagaggctctttccactgtgaaatctg
aaaggttgacaaatccatctgctttctctgcctgaaacacacagcacata
cattaataaatgctgggattctagcctggtgtactgacaacgaatagcga
gggtataagtgaaataaagtagaatccacaagatgtctgtgaagtagcca
tgggcttagatacgccatttataggagaaaaggaatgtccatgaggtagt
atcaactagccatggattttgatatgccatttataggagaaaaaatattc
taaaaaacataaacagagtactctcataagaaatgacaagatacacctta
gggatggtcaatatacaacaggctccgtccctgtccctgccccacttctg
gcctcatgaaacccacaaagttaacccacccacgtcctgcttcctgctaa
acctagaggcaggctcagcatcattttccccccacaagtgtggtgagcca
caagcacaggacatgaaacctagttagcagtcttgagatggtggacagag
cccagaccttaaagttggcaaacccacagatacacacctctctggctgtc
aggacatcagtgagccaggataaacaaaacacttaacactcaacagggat
gatcttcttccccaagtctttaggcagtgcccaatcagagccacatcttg
tgaacccctagtgccatgggttgattcttatagaagagagtcctcaggaa
gaaagacactttggatggcatagaaggcatgttggtttatatcactgggt
tcgcaactttcctaatgctgtgaccctttaatacagttcctaaccataaa
atattttcatgctacttcatatctgtaattttgctactgttagaatctgt
atatgtaataatgtaatgtcatgttttctgatgtctatcctgtaaaaagg
gtcggtgatcacaaagagactcgaaccatagttgagactctttagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3241714_3242755
seq2: B6Ng01-306I21.b_45_1080

seq1  GAATTCCAGGGAAGGAAGCTCCTTGTCATTTTGACTCTAGGAATGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAAGGAAGCTCCTTGTCATTTTGACTCTAGGAATGGTTAA  50

seq1  GGCAAGGCGACAAAATAACGTGCCTTGTGTGAGAACTGGGAGAAAAGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCGACAAAATAACGTGCCTTGTGTGAGAACTGGGAGAAAAGCGG  100

seq1  GCAAGATACTGAGAAGCGTGTGCAGACCCTTGATCCATTGTGACTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATACTGAGAAGCGTGTGCAGACCCTTGATCCATTGTGACTGGAAA  150

seq1  GAGGTTGATGTTGCTCCACAGGGCGGTTTTGGAATTGTTCACAGAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGATGTTGCTCCACAGGGCGGTTTTGGAATTGTTCACAGAGAGAC  200

seq1  CATTTAAGAGATTTAGATGTTTCTTCCTCAAGAAACAGACTAGAGGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGAGATTTAGATGTTTCTTCCTCAAGAAACAGACTAGAGGCTCT  250

seq1  AGTTTGTAATTTTGTATCTAGTGTATTGAACTTTGTTTCAAAGAACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAATTTTGTATCTAGTGTATTGAACTTTGTTTCAAAGAACTCTG  300

seq1  TGAGATTTGAAAAGTTGGTTGAGCGGGCAGCTGACACAACCTGGGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAAAAGTTGGTTGAGCGGGCAGCTGACACAACCTGGGGCTGT  350

seq1  AGAAGGGACTTGATCAGTTGCAGCTAAGTGAGAGAGAGTTGTCTTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGACTTGATCAGTTGCAGCTAAGTGAGAGAGAGTTGTCTTTTCTT  400

seq1  CTCTGAAAAAAGCAGAGGAAAGAAAGTTCTTTGAAGGAGGAAGAAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAAAAGCAGAGGAAAGAAAGTTCTTTGAAGGAGGAAGAAGACCC  450

seq1  CACGTGGGACCGTGAACATGGCCGATCAATTCCAGGAGGAGTTTATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGGACCGTGAACATGGCCGATCAATTCCAGGAGGAGTTTATCTCT  500

seq1  TGTCCCCAGGACAGATCCCCAGACTATACACAATCCTGACAAGCCACCCC  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCCCCAGGACAGATCCCCAGACTATACACAATCCTGACAAGCCA-CCC  549

seq1  CCCCCCCCACCACCTCCAGGGCCCTCATCCTAACACATCACTTCTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACCACCTCCAGGGCCCTCATCCTAACACATCACTTCTGCACA  599

seq1  AAATGCCAGGAAATGAGATCTGTTTTTAAATGTCTTATTATATCTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGGAAATGAGATCTGTTTTTAAATGTCTTATTATATCTGAAAA  649

seq1  CTGGAACCCCCTAACAATGAAGGCTTTGCCTGGGGAGCCATGTCTGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCCCCTAACAATGAAGGCTTTGCCTGGGGAGCCATGTCTGAGCA  699

seq1  GATTTGGCACTTGTATGCTGCAGAGTCTAAGAGAACAGACTGAGTGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGCACTTGTATGCTGCAGAGTCTAAGAGAACAGACTGAGTGGGGC  749

seq1  TGATTAGGAGGGAGAGACATCCTGGGTAGGGAGTGGAGAGTCTTAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGGAGGGAGAGACATCCTGGGTAGGGAGTGGAGAGTCTTAGGAAG  799

seq1  AGGTTCTAAATGTCATTGCAGGTTCTAACGGAAAAGGCAAGTTGGCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAAATGTCATTGCAGGTTCTAACGGAAAAGGCAAGTTGGCTCAA  849

seq1  GGGCTCTTCAATTTTAAGAGCCTGACTAGCTCTGGAAGGTGGGGTCTGGT  900
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GGGCTCTTCAATTTT-AGAGCCTGACTAGCTCTGGAA-GTGGGGTCTGGT  897

seq1  TTCCTTCATACCACCTGGCAGGCTGCAAGAATGTCT-GGAATATTCTTTC  949
      |||| |||||||| ||||||||||   || |||||| ||| |||||||||
seq2  TTCC-TCATACCA-CTGGCAGGCTTGCAG-ATGTCTGGGATTATTCTTTC  944

seq1  AGGAGATTTT-CTCACACGTTTCTCTGGAATGAGAAAAGA-CTGCTAGAC  997
      | |||||||| ||||||||||   |||  ||||||||||| |||||||||
seq2  A-GAGATTTTCCTCACACGTTCTCCTG--ATGAGAAAAGACCTGCTAGAC  991

seq1  GATTTTT-CTGTAACACGTTGGAAACCCACTGCTTCTTCAGGGCTT  1042
      ||||||| ||||||| || ||| |||||||||  ||||||||||||
seq2  GATTTTTCCTGTAACTCG-TGGGAACCCACTGGCTCTTCAGGGCTT  1036


seq1: chr10_3389477_3390589
seq2: B6Ng01-306I21.g_66_1163 (reverse)

seq1  TTGCTAAAGAGGTTCTCAACCTATGGGTCGAGTCTCTTTTGTGATCCAAC  50
      |||||||||||  |||||| |||||| ||||||||| |||||||| || |
seq2  TTGCTAAAGAG--TCTCAA-CTATGGTTCGAGTCTC-TTTGTGAT-CACC  45

seq1  GACCCTTTTTAACAGGGATAAGACCATCAGAAAACATGGACATTTACATT  100
      |||||||||| ||| |||| ||| ||||||||||||| |||| |||||||
seq2  GACCCTTTTT-ACA-GGAT-AGA-CATCAGAAAACAT-GACA-TTACATT  89

seq1  ATTACATAATACAGATTCCTAACAGTAGCAAAATTACAGATATGAAGTAG  150
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTACAT-ATACAGATT-CTAACAGTAGCAAAATTACAGATATGAAGTAG  137

seq1  CAATGAAAATATTTTTATGGTTAGGAACTGTATTAAAGGGTCACAGCATT  200
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  C-ATGAAAATA-TTTTATGGTTAGGAACTGTATTAAAGGGTCACAGCATT  185

seq1  AGGAAAGTTGCGAA-CCAGTGATATAAACCAACATGCCTTCTATGCCATC  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTTGCGAACCCAGTGATATAAACCAACATGCCTTCTATGCCATC  235

seq1  CAAAGTGTCTTTCTTTCCTGAGGACTCTCTTCTATAAGAATCAACCCATG  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTCTTTC-TTCCTGAGGACTCTCTTCTATAAGAATCAACCCATG  284

seq1  GCACTAGGGGTTCACAAGATGTGGCTCTGATTGGGCACTGCCTAAAGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGGGGTTCACAAGATGTGGCTCTGATTGGGCACTGCCTAAAGACT  334

seq1  TGGGGAAGAAGATCATCCCTGTTGAGTGTTAAGTGTTTTGTTTATCCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGAAGATCATCCCTGTTGAGTGTTAAGTGTTTTGTTTATCCTGG  384

seq1  CTCACTGATGTCCTGACAGCCAGAGAGGTGTGTATCTGTGGGTTTGCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGATGTCCTGACAGCCAGAGAGGTGTGTATCTGTGGGTTTGCCAA  434

seq1  CTTTAAGGTCTGGGCTCTGTCCACCATCTCAAGACTGCTAACTAGGTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGTCTGGGCTCTGTCCACCATCTCAAGACTGCTAACTAGGTTTC  484

seq1  ATGTCCTGTGCTTGTGGCTCACCACACTTGTGGGGGGAAAATGATGCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGTGCTTGTGGCTCACCACACTTGTGGGGGGAAAATGATGCTGA  534

seq1  GCCTGCCTCTAGGTTTAGCAGGAAGCAGGACGTGGGTGGGTTAACTTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTAGGTTTAGCAGGAAGCAGGACGTGGGTGGGTTAACTTTGT  584

seq1  GGGTTTCATGAGGCCAGAAGTGGGGCAGGGACAGGGACGGAGCCTGTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCATGAGGCCAGAAGTGGGGCAGGGACAGGGACGGAGCCTGTTGT  634

seq1  ATATTGACCATCCCTAAGGTGTATCTTGTCATTTCTTATGAGAGTACTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACCATCCCTAAGGTGTATCTTGTCATTTCTTATGAGAGTACTCT  684

seq1  GTTTATGTTTTTTAGAATATTTTTTCTCCTATAAATGGCATATCAAAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTTTTTTAGAATATTTTTTCTCCTATAAATGGCATATCAAAATC  734

seq1  CATGGCTAGTTGATACTACCTCATGGACATTCCTTTTCTCCTATAAATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTAGTTGATACTACCTCATGGACATTCCTTTTCTCCTATAAATGG  784

seq1  CGTATCTAAGCCCATGGCTACTTCACAGACATCTTGTGGATTCTACTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTAAGCCCATGGCTACTTCACAGACATCTTGTGGATTCTACTTTA  834

seq1  TTTCACTTATACCCTCGCTATTCGTTGTCAGTACACCAGGCTAGAATCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTATACCCTCGCTATTCGTTGTCAGTACACCAGGCTAGAATCCC  884

seq1  AGCATTTATTAATGTATGTGCTGTGTGTTTCAGGCAGAGAAAGCAGATGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATTAATGTATGTGCTGTGTGTTTCAGGCAGAGAAAGCAGATGG  934

seq1  ATTTGTCAACCTTTCAGATTTCACAGTGGAAAGAGCCTCTGAATGCAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAACCTTTCAGATTTCACAGTGGAAAGAGCCTCTGAATGCAAGA  984

seq1  AAAAAAAGTAAGTTGTACTTCCCCTGTTCCCACAAGGCCCTGGTCCAGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTAAGTTGTACTTCCCCTGTTCCCACAAGGCCCTGGTCCAGGA  1034

seq1  TCATAACAATTTTCAAAGTTCACCTAGCAATGGGGTGATTTGTAAGTGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAATTTTCAAAGTTCACCTAGCAATGGGGTGATTTGTAAGTGGG  1084

seq1  TGCAGGTAGAATTC  1113
      ||||||||||||||
seq2  TGCAGGTAGAATTC  1098


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