BAC Information

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BAC

Clone NameB6Ng01-307E05
Chromosome10 (Build37)
Map Location 12,687,053 - 12,845,167
singlet/doubletdoublet
Overlap geneSf3b5, Plagl1
Upstream geneUtrn, LOC665172, Stx11
Downstream gene4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307E05.bB6Ng01-307E05.g
ACCGA100078GA100079
length8151,133
definitionB6Ng01-307E05.b B6Ng01-307E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,844,354 - 12,845,167)(12,687,053 - 12,688,174)
sequence
gaattccaggtgccatggtcatcaatggcataccggacactccagtcatc
actgacaatagggctttaaagagtgcctaaaaggctaaatgcacccacac
tctgccttctttccccttcagcgagagccctgaaggcctgaagagacact
taaaggcccaagtaaaagcgcacccccttctaaagcatctcacctcatca
gcttatacttggagacgaaggctttgccacactcagccttcgagcacttg
aatgggcgctccctggagtgggaataattgtgaatggtgaacttctccag
ggtgacgaaggacttgccacatttttgacagcggaatggagccatggcct
ttggttctcacactttcttcttcagatgtgctgaggaactgctgtgccat
ttaagcccagacagaaagaaggtggggagtcactacagcctgactccaga
aaggcagcgctacagcctagcagccaggagagatccagagcacaatagct
gggtatctgcagagagaagaggaacagatttctcacatcagctattggaa
aactgtatccccccaccagcaccagcatcagcaccaccgtattcaagcct
gcaatcagtatattcttttaagaggttcagatgggcctggcaacccatcc
tccctttcttgcttcccgcccctctggagcctctgtgctctggtggctca
tgaaacactctcctaacaagaactgctacctccatagactcaaaatcatc
aactttatagttttcagatcagtgtgagactcagttgactcaaggggtgt
ggggggaggggaggg
gaattctctttggacttaagtgaagactggaatgtcccctatgggctctt
ctgctcccccagccttctgaatcagcctggaactgcatgatgacttctgg
gttaccagtctgttgaccaaagctcttgggacttcccagcttccataaat
gcacgagccaattccttaccatgcacaggcatatgtataggacagctctc
tgtatcttctatttgttctgctttgctggaaaatcttgaatcacaagaaa
ccagagtggaaaaacaagtaagaagccacggggttctggccacgttcaca
agaaaactgtggtaaaaggataaagggcatgagaaaggggagtgaaaaat
gagaaactagctgggggatgggaaaaagaaaagaaaaatgagcatctagt
agaaaaggggcacctatgcagatctaggaagaccacctcaaaagttgtga
gaatgtgggaacagaggatactggcatgtaagaagtccattttggtgcgt
ttgtggtggggccagaagcagatggctttatcagtacatcatctgccagg
aaagcatgaggacctgtgcttggatccataggatgcatataagaaggttg
gcaccatagttggcttctgtaaacgcacaggagtcagtcagtatgggggt
gggaggcagagacaggtagattcatggattcaccagcaagccagcttagc
caactgatgagccttgtgttagcaagacacacacacacacacacacacac
acagaggtagaatgtaatggaggaagataaccattttctacatgcatgca
tgcacatatatgtgcacccacattcatatactcatacaaaaaccatacaa
agttcattgcccaacagataatcaccccatccccactttttagagaaaag
agtctcatgtgtcacaaggctgaccttagaaattgaccacaatgggtgac
cttgaactctgatcattctggagcaattcctggagtgctgagatcacagg
cataacacccaccatgccctgtttctatgtggggaaattgaaaccctaga
agcttccatgcaagaaaatagctgcttagacttagtatggtgccttaaag
tgaactttatccactgaactccatgaattagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12844354_12845167
seq2: B6Ng01-307E05.b_45_859 (reverse)

seq1  CCCTCCCCT-CCCCCACACCCCTTGAGTCAACTGAGTCTCACACTGATCT  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCCCCCCACACCCCTTGAGTCAACTGAGTCTCACACTGATCT  50

seq1  GAAAACTATAAAGTTGATGATTTTGAGTCTATGGAGGTAGCAGTTCTTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATAAAGTTGATGATTTTGAGTCTATGGAGGTAGCAGTTCTTGT  100

seq1  TAGGAGAGTGTTTCATGAGCCACCAGAGCACAGAGGCTCCAGAGGGGCGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTGTTTCATGAGCCACCAGAGCACAGAGGCTCCAGAGGGGCGG  150

seq1  GAAGCAAGAAAGGGAGGATGGGTTGCCAGGCCCATCTGAACCTCTTAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAAAGGGAGGATGGGTTGCCAGGCCCATCTGAACCTCTTAAAA  200

seq1  GAATATACTGATTGCAGGCTTGAATACGGTGGTGCTGATGCTGGTGCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACTGATTGCAGGCTTGAATACGGTGGTGCTGATGCTGGTGCTGG  250

seq1  TGGGGGGATACAGTTTTCCAATAGCTGATGTGAGAAATCTGTTCCTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGATACAGTTTTCCAATAGCTGATGTGAGAAATCTGTTCCTCTTC  300

seq1  TCTCTGCAGATACCCAGCTATTGTGCTCTGGATCTCTCCTGGCTGCTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAGATACCCAGCTATTGTGCTCTGGATCTCTCCTGGCTGCTAGG  350

seq1  CTGTAGCGCTGCCTTTCTGGAGTCAGGCTGTAGTGACTCCCCACCTTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCGCTGCCTTTCTGGAGTCAGGCTGTAGTGACTCCCCACCTTCTT  400

seq1  TCTGTCTGGGCTTAAATGGCACAGCAGTTCCTCAGCACATCTGAAGAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGGGCTTAAATGGCACAGCAGTTCCTCAGCACATCTGAAGAAGA  450

seq1  AAGTGTGAGAACCAAAGGCCATGGCTCCATTCCGCTGTCAAAAATGTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGAACCAAAGGCCATGGCTCCATTCCGCTGTCAAAAATGTGGC  500

seq1  AAGTCCTTCGTCACCCTGGAGAAGTTCACCATTCACAATTATTCCCACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTCGTCACCCTGGAGAAGTTCACCATTCACAATTATTCCCACTC  550

seq1  CAGGGAGCGCCCATTCAAGTGCTCGAAGGCTGAGTGTGGCAAAGCCTTCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCGCCCATTCAAGTGCTCGAAGGCTGAGTGTGGCAAAGCCTTCG  600

seq1  TCTCCAAGTATAAGCTGATGAGGTGAGATGCTTTAGAAGGGGGTGCGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGTATAAGCTGATGAGGTGAGATGCTTTAGAAGGGGGTGCGCTT  650

seq1  TTACTTGGGCCTTTAAGTGTCTCTTCAGGCCTTCAGGGCTCTCGCTGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGGCCTTTAAGTGTCTCTTCAGGCCTTCAGGGCTCTCGCTGAAG  700

seq1  GGGAAAGAAGGCAGAGTGTGGGTGCATTTAGCCTTTTAGGCACTCTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAGGCAGAGTGTGGGTGCATTTAGCCTTTTAGGCACTCTTTAA  750

seq1  AGCCCTATTGTCAGTGATGACTGGAGTGTCCGGTATGCCATTGATGACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATTGTCAGTGATGACTGGAGTGTCCGGTATGCCATTGATGACCA  800

seq1  TGGCACCTGGAATTC  814
      |||||||||||||||
seq2  TGGCACCTGGAATTC  815

seq1: chr10_12687053_12688174
seq2: B6Ng01-307E05.g_67_1199

seq1  GAATTCTCTTTGGACTTAAGTGAAGACTGGAATGTCCCCTATGGGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGACTTAAGTGAAGACTGGAATGTCCCCTATGGGCTCTT  50

seq1  CTGCTCCCCCAGCCTTCTGAATCAGCCTGGAACTGCATGATGACTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCCCAGCCTTCTGAATCAGCCTGGAACTGCATGATGACTTCTGG  100

seq1  GTTACCAGTCTGTTGACCAAAGCTCTTGGGACTTCCCAGCTTCCATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAGTCTGTTGACCAAAGCTCTTGGGACTTCCCAGCTTCCATAAAT  150

seq1  GCACGAGCCAATTCCTTACCATGCACAGGCATATGTATAGGACAGCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGAGCCAATTCCTTACCATGCACAGGCATATGTATAGGACAGCTCTC  200

seq1  TGTATCTTCTATTTGTTCTGCTTTGCTGGAAAATCTTGAATCACAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCTATTTGTTCTGCTTTGCTGGAAAATCTTGAATCACAAGAAA  250

seq1  CCAGAGTGGAAAAACAAGTAAGAAGCCACGGGGTTCTGGCCACGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGGAAAAACAAGTAAGAAGCCACGGGGTTCTGGCCACGTTCACA  300

seq1  AGAAAACTGTGGTAAAAGGATAAAGGGCATGAGAAAGGGGAGTGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGTGGTAAAAGGATAAAGGGCATGAGAAAGGGGAGTGAAAAAT  350

seq1  GAGAAACTAGCTGGGGGATGGGAAAAAGAAAAGAAAAATGAGCATCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTAGCTGGGGGATGGGAAAAAGAAAAGAAAAATGAGCATCTAGT  400

seq1  AGAAAAGGGGCACCTATGCAGATCTAGGAAGACCACCTCAAAAGTTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGGCACCTATGCAGATCTAGGAAGACCACCTCAAAAGTTGTGA  450

seq1  GAATGTGGGAACAGAGGATACTGGCATGTAAGAAGTCCATTTTGGTGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGGAACAGAGGATACTGGCATGTAAGAAGTCCATTTTGGTGCGT  500

seq1  TTGTGGTGGGGCCAGAAGCAGATGGCTTTATCAGTACATCATCTGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGGGGCCAGAAGCAGATGGCTTTATCAGTACATCATCTGCCAGG  550

seq1  AAAGCATGAGGACCTGTGCTTGGATCCATAGGATGCATATAAGAAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGAGGACCTGTGCTTGGATCCATAGGATGCATATAAGAAGGTTG  600

seq1  GCACCATAGTTGGCTTCTGTAAACGCACAGGAGTCAGTCAGTATGGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATAGTTGGCTTCTGTAAACGCACAGGAGTCAGTCAGTATGGGGGT  650

seq1  GGGAGGCAGAGACAGGTAGATTCATGGATTCACCAGCAAGCCAGCTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGACAGGTAGATTCATGGATTCACCAGCAAGCCAGCTTAGC  700

seq1  CAACTGATGAGCCTTGTGTTAGCAAGACACACACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATGAGCCTTGTGTTAGCAAGACACACACACACACACACACACAC  750

seq1  ACAGAGGTAGAATGTAATGGAGGAAGATAACCATTTTCTACATGCATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTAGAATGTAATGGAGGAAGATAACCATTTTCTACATGCATGCA  800

seq1  TGCACATATATGTGCACCCACATTCATATACTCATACAAAAACCATACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATATATGTGCACCCACATTCATATACTCATACAAAAACCATACAA  850

seq1  AGTTCATTGCCCAACAGATAATCA-CCCATCCCCAC-TTTTAGAG-AAAG  897
      |||||||||||||||||||||||| ||||||||||| |||||||| ||||
seq2  AGTTCATTGCCCAACAGATAATCACCCCATCCCCACTTTTTAGAGAAAAG  900

seq1  AGTCTCATGTGTCACAA-GCTGACCTTAGAAATTGACCACAA-GGGTGAC  945
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  AGTCTCATGTGTCACAAGGCTGACCTTAGAAATTGACCACAATGGGTGAC  950

seq1  CCTGAACTTCTGATCATTCTGGAGCAATTTCCTGGAGTGCTGAGATCACA  995
      | ||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTGAAC-TCTGATCATTCTGGAGCAA-TTCCTGGAGTGCTGAGATCACA  998

seq1  GGCAT-ACA-CCACCATG-CCTGGTTCTATGTGGGG-AATTGAA--CCTA  1039
      ||||| ||| |||||||| |||| |||||||||||| |||||||  ||||
seq2  GGCATAACACCCACCATGCCCTGTTTCTATGTGGGGAAATTGAAACCCTA  1048

seq1  G-AGCTT-CATGCAAG-AAATAGGTTCCTAGACCTTAGTATGTTCCCTTT  1086
      | ||||| |||||||| |||||| | | |||| ||||||||| | || ||
seq2  GAAGCTTCCATGCAAGAAAATAGCTGCTTAGA-CTTAGTATGGTGCC-TT  1096

seq1  AAAGTAGACTTTATTCCAACTG-ACTCCATGA--TAGAG  1122
      |||||  |||||||  | |||| |||||||||  |||||
seq2  AAAGTGAACTTTAT--CCACTGAACTCCATGAATTAGAG  1133