BAC Information

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BAC

Clone NameB6Ng01-309K11
Chromosome10 (Build37)8 (Build37)
Map Location 5,762,463 - 5,763,24729,353,837 - 29,354,991
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSyne1, Esr1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309K11.bB6Ng01-309K11.g
ACCGA101841GA101842
length1,1881,136
definitionB6Ng01-309K11.b B6Ng01-309K11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,762,463 - 5,763,247)(29,353,837 - 29,354,991)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacataaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacacggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatcttcaccctat
agtgaacacattatgaactaaccagtacccctgagctctgactctagctg
catatgttatcaaagatggcctagtcgccactcactgtaaagagaggccc
atggacaccgcagacttggttgccggtacaaggccatgccaggccaacgg
gggaatggtatgatagtcagtcccattcatgctctgtc

gaattcaggggtgatgctgtagtctgggaggtaattgcaggaaatccaag
caagcaaacaaatgtacctgcaaacaaagttcaaataatacctcagatag
ataagaaactacaccgtgtctcctacaggcttataatgatttttcacaga
gcacctggtatatattatttcatccccataataatcctataaagtagaca
atatgaattaccaacattatggagatgagaaaactaagctagaaagatta
aatagcatgctgaagactcacgctaagtcttacctgactttgcatctaag
cttttaaccaccattccaccttgtggataacaattggcaaacattattcc
actttaagtaaattttaattaggctcagaatcctattcccagtgaggtcc
atttgtgaacttcttcgtagagtttagttatagctagaatcttgctaaga
cagcttggaaagtggtcccttcttgatattgttgtggccctttcttcatc
actcttagttcctagatgactgtatcaccttatcccttctgtcctaagac
tcccaattcagttaagtcagtattctttcatctatgatgtagcgagtttc
cagagactagtacctccacccgcaataatggcttgtttcttgaatgttat
ggcttaaaatattctccacaagctcacgtgttgaaagcctgttaacctgt
tgttatttggggaggtggaacctacaggatagtgggttctcaacatgtgt
gtctcagtcctttgggaatcaaatgcgtctttctcagcagttaccaaaga
ccatcagaaaacacagatatttatattatgattcataacagtagtaaaat
tacaggtatgaagtaacgatgaaaataatcttatggttgggggtctccgc
aacatgatactgtgacccttgaatataattcctcatattctattgactcc
aaaccaaatattttcactgcactttatactgtattttccttctgtattaa
gggtctcagcattaggaaggctgagatcactgaatataggagagagggct
tgatgtcagaacatggttcactgttaacagcttaaagttgatagctcgcc
tcagctactgcctttcctatcagtccaccacaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5762463_5763247
seq2: B6Ng01-309K11.b_893_1234 (reverse)

seq1  GACAGAGGTTTAGAGATAAACATGAAATGGCAATATATGTGTGAGCCAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAACTCAGTAGGAGAGTGCTGGACACTTGAAGGATTGTGCAAGCCAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAAAAGGCTTTCCTAGAAGAACTTACCAGAAAGGACTTCAGACCCAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGGACATCGCTGCTAGGGGATTCTCAAGAGGAAAATCCCAACACTGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTAATTACACACACACACACACACACACACACACACACACACACACACAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACCATCAATGTTTCCTCAGCATGAATGGGACTGGCTTCCATGTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTATCTAACGTGCCCTGTGCTGACCCTCTCTGAGGGAACATTTGCTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTTCTTTTTCTTTTTTTAAAAATATTTTTATTAGGTATTTTCCTCAT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTACATTTCCAATGCTATCCCAAAAGTCCCCCACACCCTCCCCCTGCACT  450
                                     || | | |      | |||
seq2  -----------------------------GACAGAGCAT-GAATGGGACT  20

seq1  CCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGG  500
         ||| |   ||| |||| | ||   | |||||| |  || |||||   
seq2  -GACTATCATACCATTCCCCCGTT---GGCCTGGCATGGCCTTGTAC--C  64

seq1  GGCATATAAAGTTTGC-AAGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  549
      |||| |  |||| |||   |||| |||||||||||||| ||||||  | |
seq2  GGCA-ACCAAGTCTGCGGTGTCC-ATGGGCCTCTCTTTACAGTGAGTGGC  112

seq1  AACTAGGCCATCTTTTGAT-ACATATGCAGCTAGAGTCAAGAGCTCCGGG  598
       ||||||||||| |||||| |||||||||||||||||| ||||||| |||
seq2  GACTAGGCCATC-TTTGATAACATATGCAGCTAGAGTC-AGAGCTCAGGG  160

seq1  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCTCTT  648
      |||||||||||||||||||| |||||   |||||||| || ||||| |||
seq2  GTACTGGTTAGTTCATAATG-TGTTC--ACTATAGGG-TGAAGATCCCTT  206

seq1  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGCGGGCCCTGTGATCC  698
      ||||||||||||||||||||||||||||||||||| | ||| ||||||||
seq2  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCGTGTGATCC  256

seq1  ATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGC  748
      ||||| |||||||||||||||||||||||||||| |||||||||||  ||
seq2  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTG-TTGCTAGGCCCGGGC  305

seq1  ATAGTCTCACAAGAGACAGCTATATCTGGATCCTTTC  785
      |||||||||||||||||||||| |||||| |||||||
seq2  ATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTC  342


seq1: chr8_29353837_29354991
seq2: B6Ng01-309K11.g_70_1205

seq1  GAATTCAGGGGTGATGCTGTAGTCTGGGAGGTAATTGCAGGAAATCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGTGATGCTGTAGTCTGGGAGGTAATTGCAGGAAATCCAAG  50

seq1  CAAGCAAACAAATGTACCTGCAAACAAAGTTCAAATAATACCTCAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAACAAATGTACCTGCAAACAAAGTTCAAATAATACCTCAGATAG  100

seq1  ATAAGAAACTACACCGTGTCTCCTACAGGCTTATAATGATTTTTCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAACTACACCGTGTCTCCTACAGGCTTATAATGATTTTTCACAGA  150

seq1  GCACCTGGTATATATTATTTCATCCCCATAATAATCCTATAAAGTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGTATATATTATTTCATCCCCATAATAATCCTATAAAGTAGACA  200

seq1  ATATGAATTACCAACATTATGGAGATGAGAAAACTAAGCTAGAAAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTACCAACATTATGGAGATGAGAAAACTAAGCTAGAAAGATTA  250

seq1  AATAGCATGCTGAAGACTCACGCTAAGTCTTACCTGACTTTGCATCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATGCTGAAGACTCACGCTAAGTCTTACCTGACTTTGCATCTAAG  300

seq1  CTTTTAACCACCATTCCACCTTGTGGATAACAATTGGCAAACATTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACCACCATTCCACCTTGTGGATAACAATTGGCAAACATTATTCC  350

seq1  ACTTTAAGTAAATTTTAATTAGGCTCAGAATCCTATTCCCAGTGAGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGTAAATTTTAATTAGGCTCAGAATCCTATTCCCAGTGAGGTCC  400

seq1  ATTTGTGAACTTCTTCGTAGAGTTTAGTTATAGCTAGAATCTTGCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAACTTCTTCGTAGAGTTTAGTTATAGCTAGAATCTTGCTAAGA  450

seq1  CAGCTTGGAAAGTGGTCCCTTCTTGATATTGTTGTGGCCCTTTCTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGAAAGTGGTCCCTTCTTGATATTGTTGTGGCCCTTTCTTCATC  500

seq1  ACTCTTAGTTCCTAGATGACTGTATCACCTTATCCCTTCTGTCCTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTTCCTAGATGACTGTATCACCTTATCCCTTCTGTCCTAAGAC  550

seq1  TCCCAATTCAGTTAAGTCAGTATTCTTTCATCTATGATGTAGCGAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTCAGTTAAGTCAGTATTCTTTCATCTATGATGTAGCGAGTTTC  600

seq1  CAGAGACTAGTACCTCCACCCGCAATAATGGCTTGTTTCTTGAATGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTAGTACCTCCACCCGCAATAATGGCTTGTTTCTTGAATGTTAT  650

seq1  GGCTTAAAATATTCTCCACAAGCTCACGTGTTGAAAGCCTGTTAACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAAATATTCTCCACAAGCTCACGTGTTGAAAGCCTGTTAACCTGT  700

seq1  TGTTATTTGGGGAGGTGGAACCTACAGGATAGTGGGTTCTCAACATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGGGGAGGTGGAACCTACAGGATAGTGGGTTCTCAACATGTGT  750

seq1  GTCTCAGGTCCTTTGGGAATCAAATGCGTCTTTCTCAGCAGTTACCAAAG  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCA-GTCCTTTGGGAATCAAATGCGTCTTTCTCAGCAGTTACCAAAG  799

seq1  ACCATCAGAAAACACAGATATTTATATTATGATTCATAACAGTAGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGAAAACACAGATATTTATATTATGATTCATAACAGTAGTAAAA  849

seq1  TTACAGGTATGAAGTAACGATGAAAATAATCTTATGGTTGGGGGTCTCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTATGAAGTAACGATGAAAATAATCTTATGGTTGGGGGTCTCCG  899

seq1  CAACATGATACTGTGACCCTTGAATATAATTCCTCATATTCTATTGACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGATACTGTGACCCTTGAATATAATTCCTCATATTCTATTGACTC  949

seq1  CAAACCAAAATTATTTCCACTGCACTTTATACCTGTAATTTTCCTTCTGT  1000
      |||||||||  ||||| |||||||||||||| |||| |||||||||||||
seq2  CAAACCAAA--TATTTTCACTGCACTTTATA-CTGT-ATTTTCCTTCTGT  995

seq1  ATTAAAGGGTCTCAGCATTAGGAAGGCTGAGAACCACTG-ATATAGGAGA  1049
      ||| ||||||||||||||||||||||||||| | ||||| ||||||||||
seq2  ATT-AAGGGTCTCAGCATTAGGAAGGCTGAG-ATCACTGAATATAGGAGA  1043

seq1  GAGGGCTTGGATGTCAG-ACATGGGTCACTGGTAACAGGCTTTTAAAGTT  1098
      |||||||| |||||||| |||||| |||||| ||||||    ||||||||
seq2  GAGGGCTT-GATGTCAGAACATGGTTCACTGTTAACAG---CTTAAAGTT  1089

seq1  GATAGCCTCGCTCCAGGTTACTGCCTCTATTTCCTAATTCCAGGTCCACC  1148
      ||||| |||||  || | |||||||    |||||||  ||   |||||||
seq2  GATAG-CTCGCCTCA-GCTACTGCC----TTTCCTA--TC--AGTCCACC  1129

seq1  ACAATGT  1155
      |||| ||
seq2  ACAAGGT  1136


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