BAC Information

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BAC

Clone NameB6Ng01-310A18
Chromosome10 (Build37)
Map Location 126,248,812 - 126,364,991
singlet/doubletdoublet
Overlap geneLOC668336, Xrcc6bp1, LOC622567
Upstream geneLrig3, LOC100043547
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A18.bB6Ng01-310A18.g
ACCGA102134GA102135
length1,201526
definitionB6Ng01-310A18.b B6Ng01-310A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,248,812 - 126,250,008)(126,364,461 - 126,364,991)
sequence
gaattccaagaactgcatcgtctcattgggacacataacatcgtttctgg
gagcagcaagctgggaaatgtctccattttaaacacccagagggggaggc
atagggagaccgacgacaccaagcagattgaaaagcctcgtgactgcaga
gctcctaatgatggctttggcgggattccaggagcaggtcagccccaggt
tcctcattgtcacagtggttcatcacacaaccataagacatatgcttcag
tgctgacagacccctgacctgtgccttctctatcgcctctgtccagtatc
ccttcctattcagcccaccgccacccgccgccacccgcccacagccagtt
ttcttcagcccctacaattctgctctccttctcaagggacagtaagaaag
gaaacacttctaacctcctcagaccttggcttccatggcatgggctttct
tctctgcatcttcttttgaattagcatagctaatagcaatactgtctcct
gatttggactgctgtgccctagctctccttccgggcttctatggctcggt
gatgctgatcatctttgaatccattctgcagcctgatcctcccccagtgc
tcccagggcaaagcccagacggctcctcctctgggtcatgcagctcctac
cgaggtgaacttagtgtaactcttatagaccaaggatggtgcggaggaag
atgaccccacccccaccccaggcaaccatgagactgtggtcataagtata
ctgctagtgaattcccagaattgtaactgagtctggctctctgccaagga
ggaagtgggagaggaaagccaatcaatatctggaagccaggcaacaaaca
gcccaggatatagaatcccacaggccatagaaactgaagatatctgcctc
ggagaagcttttcctgctcaaaactgagcagcacggcttgtatttgcaag
cctgaggagaaggccccatgtgggagaatgggagcttctgggaggctgtg
gtgcatttatggggactttctcagcttttctttttatgatgaataatgca
aaatttaatttgggggtgaagacattgtgcctaggatttttctactactg
tacgatgcctctactcatttttttttccataaatgttgacagagtggatg
accgataggtcaaagctcacagttcagactcttgggcgcttttaactttt
a
tgttagccagagttctaaaacaggtgcttactattctcatcagctctggc
tgtttgaggacactgtatgtgggaagaaaaatcaaccattgcatacatct
agcatctattgtctacctcctaggcactgtggagagggagaaacagccgt
tagacagccttgtgatgaagcaggagttggatcaagctgcacaggcagtt
ttaaagccccgttccaggctaaacagaagagagtcacaggcagtgcgtaa
ttacctggggatgaatagtttggataatgagtcctgcaggctttgggagg
agggctcctctgggggccttggctgcaggtggacttgaactggaggcagg
gtggggggtcagcctgctaggtgtctcagtgggagggaggacggagtgtg
gtgctggtgggggagggatgaacagagtgggcgatcattttggaaaactg
aggtggtgaaaattgaggctggaactctgcagggtggcctgtcacttgaa
agcaacgtgattgtgaggtggagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126248812_126250008
seq2: B6Ng01-310A18.b_48_1248

seq1  GAATTCCAAGAACTGCATCGTCTCATTGGGACACATAACATCGTTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAACTGCATCGTCTCATTGGGACACATAACATCGTTTCTGG  50

seq1  GAGCAGCAAGCTGGGAAATGTCTCCATTTTAAACACCCAGAGGGGGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAAGCTGGGAAATGTCTCCATTTTAAACACCCAGAGGGGGAGGC  100

seq1  ATAGGGAGACCGACGACACCAAGCAGATTGAAAAGCCTCGTGACTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGACCGACGACACCAAGCAGATTGAAAAGCCTCGTGACTGCAGA  150

seq1  GCTCCTAATGATGGCTTTGGCGGGATTCCAGGAGCAGGTCAGCCCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAATGATGGCTTTGGCGGGATTCCAGGAGCAGGTCAGCCCCAGGT  200

seq1  TCCTCATTGTCACAGTGGTTCATCACACAACCATAAGACATATGCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTGTCACAGTGGTTCATCACACAACCATAAGACATATGCTTCAG  250

seq1  TGCTGACAGACCCCTGACCTGTGCCTTCTCTATCGCCTCTGTCCAGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAGACCCCTGACCTGTGCCTTCTCTATCGCCTCTGTCCAGTATC  300

seq1  CCTTCCTATTCAGCCCACCGCCACCCGCCGCCACCCGCCCACAGCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTATTCAGCCCACCGCCACCCGCCGCCACCCGCCCACAGCCAGTT  350

seq1  TTCTTCAGCCCCTACAATTCTGCTCTCCTTCTCAAGGGACAGTAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGCCCCTACAATTCTGCTCTCCTTCTCAAGGGACAGTAAGAAAG  400

seq1  GAAACACTTCTAACCTCCTCAGACCTTGGCTTCCATGGCATGGGCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTTCTAACCTCCTCAGACCTTGGCTTCCATGGCATGGGCTTTCT  450

seq1  TCTCTGCATCTTCTTTTGAATTAGCATAGCTAATAGCAATACTGTCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATCTTCTTTTGAATTAGCATAGCTAATAGCAATACTGTCTCCT  500

seq1  GATTTGGACTGCTGTGCCCTAGCTCTCCTTCCGGGCTTCTATGGCTCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGACTGCTGTGCCCTAGCTCTCCTTCCGGGCTTCTATGGCTCGGT  550

seq1  GATGCTGATCATCTTTGAATCCATTCTGCAGCCTGATCCTCCCCCAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGATCATCTTTGAATCCATTCTGCAGCCTGATCCTCCCCCAGTGC  600

seq1  TCCCAGGGCAAAGCCCAGACGGCTCCTCCTCTGGGTCATGCAGCTCCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCAAAGCCCAGACGGCTCCTCCTCTGGGTCATGCAGCTCCTAC  650

seq1  CGAGGTGAACTTAGTGTAACTCTTATAGACCAAGGATGGTGCGGAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGAACTTAGTGTAACTCTTATAGACCAAGGATGGTGCGGAGGAAG  700

seq1  ATGACCCCACCCCCACCCCAGGCAACCATGAGACTGTGGTCATAAGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCACCCCCACCCCAGGCAACCATGAGACTGTGGTCATAAGTATA  750

seq1  CTGCTAGTGAATTCCCAGAATTGTAACTGAGTCTGGCTCTCTGCCAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTGAATTCCCAGAATTGTAACTGAGTCTGGCTCTCTGCCAAGGA  800

seq1  GGAAGTGGGAGAGGAAAGCCAATCAATATCTGGAAGCCAGGCAACAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGAGAGGAAAGCCAATCAATATCTGGAAGCCAGGCAACAAACA  850

seq1  GCCCAGGATATAGAATCCCACAGGCCATAG-AACTGAAGATATCTGCCTC  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCCAGGATATAGAATCCCACAGGCCATAGAAACTGAAGATATCTGCCTC  900

seq1  GGAGAAGC-TTTCCTGCTCAAAACTGAGCAGCACGGC-TGTA-TTGCAAG  946
      |||||||| |||||||||||||||||||||||||||| |||| |||||||
seq2  GGAGAAGCTTTTCCTGCTCAAAACTGAGCAGCACGGCTTGTATTTGCAAG  950

seq1  CCTGAGGAGAAGGCCCCATGT-GGAGAAT-GGAGC-TCTGGGAGGCTGTG  993
      ||||||||||||||||||||| ||||||| ||||| ||||||||||||||
seq2  CCTGAGGAGAAGGCCCCATGTGGGAGAATGGGAGCTTCTGGGAGGCTGTG  1000

seq1  GTGCA-TTAT-GGGAC-TTCTCAGCCTTTC-TTTTATGATGAAATAATGC  1039
      ||||| |||| ||||| |||||||| |||| |||||||||| ||||||||
seq2  GTGCATTTATGGGGACTTTCTCAGCTTTTCTTTTTATGATG-AATAATGC  1049

seq1  AAATTTTAATTT-GGGGTG-AGACATTGTGGCTAGGA-TTTTCTACTACT  1086
      ||| |||||||| |||||| |||||||||| |||||| ||||||||||| 
seq2  AAAATTTAATTTGGGGGTGAAGACATTGTGCCTAGGATTTTTCTACTAC-  1098

seq1  TGTAACCAAATGCCTTCTTACTCAATTTTTTTTTCCCATAAAATGTTGAC  1136
      ||||     ||||||   ||||||  |||||||| |||| ||||||||| 
seq2  TGTA---CGATGCCT--CTACTCA--TTTTTTTTTCCAT-AAATGTTGA-  1139

seq1  CAGAGT-GATGACCGATA-GTCAAAGCTCACAGGTTTCAGACATCTT-GG  1183
      |||||| ||||||||||| ||||||||||||||  ||||||| |||| ||
seq2  CAGAGTGGATGACCGATAGGTCAAAGCTCACAG--TTCAGAC-TCTTGGG  1186

seq1  CG-TTTTAATTTTTA  1197
      || |||||| |||||
seq2  CGCTTTTAACTTTTA  1201

seq1: chr10_126364461_126364991
seq2: B6Ng01-310A18.g_69_600 (reverse)

seq1  ATTCTCCGCC-CACACTCACGGTGCTTTCAAGTGACTGGCCACCCTGCAG  49
      ||||||| || |||| ||||| |||||||||||||| |||||||||||||
seq2  ATTCTCCACCTCACAATCACGTTGCTTTCAAGTGACAGGCCACCCTGCAG  50

seq1  AGTTCCAGCCTCAATTTTCACCACCTCAGTTTTCCAAAATGATCGCCCAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCCTCAATTTTCACCACCTCAGTTTTCCAAAATGATCGCCCAC  100

seq1  TCTGTTCATCCCTCCCCCACCAGCACCACACTCCGTCCTCCCTCCCACTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCATCCCTCCCCCACCAGCACCACACTCCGTCCTCCCTCCCACTG  150

seq1  AGACACCTAGCAGGCTGACCCCCCACCCTGCCTCCAGTTCAAGTCCACCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTAGCAGGCTGACCCCCCACCCTGCCTCCAGTTCAAGTCCACCT  200

seq1  GCAGCCAAGGCCCCCAGAGGAGCCCTCCTCCCAAAGCCTGCAGGACTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAAGGCCCCCAGAGGAGCCCTCCTCCCAAAGCCTGCAGGACTCAT  250

seq1  TATCCAAACTATTCATCCCCAGGTAATTACGCACTGCCTGTGACTCTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAACTATTCATCCCCAGGTAATTACGCACTGCCTGTGACTCTCTT  300

seq1  CTGTTTAGCCTGGAACGGGGCTTTAAAACTGCCTGTGCAGCTTGATCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGCCTGGAACGGGGCTTTAAAACTGCCTGTGCAGCTTGATCCAA  350

seq1  CTCCTGCTTCATCACAAGGCTGTCTAACGGCTGTTTCTCCCTCTCCACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTCATCACAAGGCTGTCTAACGGCTGTTTCTCCCTCTCCACAG  400

seq1  TGCCTAGGAGGTAGACAATAGATGCTAGATGTATGCAATGGTTGATTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGGAGGTAGACAATAGATGCTAGATGTATGCAATGGTTGATTTTT  450

seq1  CTTCCCACATACAGTGTCCTCAAACAGCCAGAGCTGATGAGAATAGTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACATACAGTGTCCTCAAACAGCCAGAGCTGATGAGAATAGTAAG  500

seq1  CACCTGTTTTAGAACTCTGGCTAACAGAATTC  531
      ||||||||||||||||||||||||||||||||
seq2  CACCTGTTTTAGAACTCTGGCTAACAGAATTC  532