BAC Information

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BAC

Clone NameB6Ng01-314I19
Chromosome10 (Build37)
Map Location 106,227,987 - 106,340,357
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314I19.bB6Ng01-314I19.g
ACCGA105446GA105447
length1,1461,018
definitionB6Ng01-314I19.b B6Ng01-314I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,227,987 - 106,229,138)(106,339,341 - 106,340,357)
sequence
gaattcagctagaattaaaatatggatccattttgaagctaattatgtgt
tgatatggtgagagttcctctgtctcactcttggattttgaaataaaaat
agatgaggtgaatcactgttaatcacatgggtataaagcctgaaaattgt
tgtgaaattggtgaggacaataatatgaattttaaactctgagcatgaaa
atccctgtagaactagctctgggttcatgtggatgcaagttaatttttaa
aaataggtgggaaaatttcaagattaattgctttaggggccacctagaaa
ttagaaataaaaaaagttgaataatgtagacagcattatttttcttacta
taagaagtctaagctgggcagtggtgacacatacctttaatcccagaact
tgggaggcagaggcaggaggatttctgagttcaaggccagcctggtctac
agaatgagctccaagacagccagggctacacagagaaaccctgtctctaa
aaataaaaaaataaaaaaaaaaataaaaagtctacacatcttatcttcaa
actcattccaaaatatgtacttcaaattgtttgccaggagtaaggaggta
aaatatattactcccagaacagagaactattgtccggatctaggcaagaa
tttagattgcatttacagggaatcattccattagttattcaacatcatga
acaaataatgtagaaaatgttcaggctttgaaataattatatacagattg
gaaaattagctatgatatattgcttactctaaaaatagatgtatgctttt
gcattcatactctacaagtttccttattagcaaaaataaaactctaaact
tataacactacaggaaatctaagaatatgtttattaaagaatatatttat
taaaatgttatatcctgtacatgacacataatgttagtttatggtagcta
ctattaatgctagtagtttaattaggaatgtattttaactagagttacat
taaaaattcatacttgtcttccttaatgaataaggaaaaatcttactaat
attcctcttataaatgaagttttcaagtcataaaaaatggaaatcgaata
aaagtttggatcggatatatgcctatcttgtgctattttagaaaac
gaattccattcacacatttttattcatcaacatccttggacatggtaaac
tgaatgtcacagagaagctataaacctcacagactgaaaaacagcatcag
ctttacctattggtttgtggtttttgttttttgttttttttttttgtttg
ttttgttttgtttttttaaatcaaataaatgtgtccttccttgccttcat
ggagaagaaaaagaactgaaacattatttccagatactgtcatttagaaa
aaggtatttctcagcctcctcgtcaataatgataattccaagtattcatt
ttcttattcttcacatgtatctcagtaccaactgttgtggtctgaatgtg
aaatgtcttccatgggctcaagcatttgaaaactcaatctctaaatggtg
gcaatgtttaggaaggttgtggaaacttaggaagtagagccttaagggac
aactgtgtcactgtggtcaggtcttgaggctttataggcaagttccaatt
ctgtgctcagtgctatagactatagacacagctggtcagcatttggttcc
taccaccatgtttctctgcctacagccatgtcttccccaccatgatggcc
ccggtctctctgaaattttaagacaaagtacattctttcttccctaattt
cccttttttcaggtacagaaagataacaaagataccattataatatgttt
ttcttgtgcattcaaggtaagagctttctccagagtcatacccataatat
ggtgggaaacagaataaattaaaatattttttctaccatggactactctt
ttaagaagtctcctctttctttttctcacaaaaataatctttagtactag
ctcttctatataaacaataataaatcaacaattgaattctagtattctac
tgtaaaatagaagaatcatggtattattctcaatggaacagtcacatcaa
atgtcacaataatttctttttctagccaaatctatacacaaagtcctcca
aatcatgggacttctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106227987_106229138
seq2: B6Ng01-314I19.b_43_1188

seq1  GAATTCAGCTAGAATTAAAATATGGATCCATTTTGAAGCTAATTATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAGAATTAAAATATGGATCCATTTTGAAGCTAATTATGTGT  50

seq1  TGATATGGTGAGAGTTCCTCTGTCTCACTCTTGGATTTTGAAATAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGTGAGAGTTCCTCTGTCTCACTCTTGGATTTTGAAATAAAAAT  100

seq1  AGATGAGGTGAATCACTGTTAATCACATGGGTATAAAGCCTGAAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGTGAATCACTGTTAATCACATGGGTATAAAGCCTGAAAATTGT  150

seq1  TGTGAAATTGGTGAGGACAATAATATGAATTTTAAACTCTGAGCATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTGGTGAGGACAATAATATGAATTTTAAACTCTGAGCATGAAA  200

seq1  ATCCCTGTAGAACTAGCTCTGGGTTCATGTGGATGCAAGTTAATTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTAGAACTAGCTCTGGGTTCATGTGGATGCAAGTTAATTTTTAA  250

seq1  AAATAGGTGGGAAAATTTCAAGATTAATTGCTTTAGGGGCCACCTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTGGGAAAATTTCAAGATTAATTGCTTTAGGGGCCACCTAGAAA  300

seq1  TTAGAAATAAAAAAAGTTGAATAATGTAGACAGCATTATTTTTCTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAAAAAAAGTTGAATAATGTAGACAGCATTATTTTTCTTACTA  350

seq1  TAAGAAGTCTAAGCTGGGCAGTGGTGACACATACCTTTAATCCCAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTCTAAGCTGGGCAGTGGTGACACATACCTTTAATCCCAGAACT  400

seq1  TGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAC  450

seq1  AGAATGAGCTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCTAA  500

seq1  AAATAAAAAAATAAAAAAAAAAATAAAAAGTCTACACATCTTATCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAATAAAAAAAAAAATAAAAAGTCTACACATCTTATCTTCAA  550

seq1  ACTCATTCCAAAATATGTACTTCAAATTGTTTGCCAGGAGTAAGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCAAAATATGTACTTCAAATTGTTTGCCAGGAGTAAGGAGGTA  600

seq1  AAATATATTACTCCCAGAACAGAGAACTATTGTCCGGATCTAGGCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTACTCCCAGAACAGAGAACTATTGTCCGGATCTAGGCAAGAA  650

seq1  TTTAGATTGCATTTACAGGGAATCATTCCATTAGTTATTCAACATCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTGCATTTACAGGGAATCATTCCATTAGTTATTCAACATCATGA  700

seq1  ACAAATAATGTAGAAAATGTTCAGGCTTTGAAATAATTATATACAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATGTAGAAAATGTTCAGGCTTTGAAATAATTATATACAGATTG  750

seq1  GAAAATTAGCTATGATATATTGCTTACTCTAAAAATAGATGTATGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAGCTATGATATATTGCTTACTCTAAAAATAGATGTATGCTTTT  800

seq1  GCATTCATACTCTACAAGTTTCCTTATTAGCAAAAATAAAACTCTAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATACTCTACAAGTTTCCTTATTAGCAAAAATAAAACTCTAAACT  850

seq1  TATAACACTACAGGAAATCTAAGAATATGTTTATTAAAGAATATATTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTACAGGAAATCTAAGAATATGTTTATTAAAGAATATATTTAT  900

seq1  TAAAATGTTTATATCCTGTACATGACACATAATGTTTAGTTTATGGTAGC  950
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAATG-TTATATCCTGTACATGACACATAATG-TTAGTTTATGGTAGC  948

seq1  TACTATTAATGCTAGTAGTTTTAAATTAGGAATGTATTTTAACTAGAGTT  1000
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TACTATTAATGCTAGTAGTTT--AATTAGGAATGTATTTTAACTAGAGTT  996

seq1  ACATTTAAAAATTCATACTTGTCTTCCTT-ATGAATAAGGAAAAATCTTA  1049
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACA-TTAAAAATTCATACTTGTCTTCCTTAATGAATAAGGAAAAATCTTA  1045

seq1  CTAATAT--CTCCTATAAATGAAATTTTCAAAGTCAT-AAATATGGAAAA  1096
      |||||||  ||| |||||||||| ||||| ||||||| ||| ||||  ||
seq2  CTAATATTCCTCTTATAAATGAAGTTTTC-AAGTCATAAAAAATGG--AA  1092

seq1  ATCGAATAAAAGTTAGATTCGTATATATGGCCTTTCTTGTGCTATTTTTA  1146
      |||||||||||||| |  ||| |||||| |||| |||||||||| |||||
seq2  ATCGAATAAAAGTTTGGATCGGATATAT-GCCTATCTTGTGCTA-TTTTA  1140

seq1  GAAAAC  1152
      ||||||
seq2  GAAAAC  1146

seq1: chr10_106339341_106340357
seq2: B6Ng01-314I19.g_68_1085 (reverse)

seq1  ACTAGGAAGTTCCATGATTTGGAGAACTTTGTGTATAGATTT-GCTAGGA  49
      |||| ||||| ||||||||||||| ||||||||||||||||| |||| ||
seq2  ACTA-GAAGTCCCATGATTTGGAGGACTTTGTGTATAGATTTGGCTA-GA  48

seq1  AAAAGAAA-TATTGTGACATTTGATGTGAACTGGTTTCCAATTGAAGGAA  98
      |||||||| ||||||||||||||||||| ||||  |||| |||||    |
seq2  AAAAGAAATTATTGTGACATTTGATGTG-ACTG--TTCC-ATTGA---GA  91

seq1  ATAATACCATGAT--CTCTATGTTAACAAGTAG-ATACTAGATTCAAATT  145
      |||||||||||||   ||||| |||   ||||| |||||||| |  ||||
seq2  ATAATACCATGATTCTTCTATTTTA--CAGTAGAATACTAGAATTCAATT  139

seq1  GTTG----ATTATATGTTATATAG-AGAGCTAGTACTAAAGATTA-TTTT  189
      ||||    |||||   |||||||| |||||||||||||||||||| ||||
seq2  GTTGATTTATTATTGTTTATATAGAAGAGCTAGTACTAAAGATTATTTTT  189

seq1  GTGAG-AAAAGAAAGGAGAGACTTCTTAAAAGAGTAGTCCATGGTAGAAA  238
      ||||| |||||||||  |||||||||||||||||||||||||||||||||
seq2  GTGAGAAAAAGAAAGAGGAGACTTCTTAAAAGAGTAGTCCATGGTAGAAA  239

seq1  AAATATTTTAATTTATTCTGTTTCCCACCATATTATGGGTATGACTCTGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAATTTATTCTGTTTCCCACCATATTATGGGTATGACTCTGG  289

seq1  AGAAAGCTCTTACCTTGAATGCACAAGAAAAACATATTATAATGGTATCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCTTACCTTGAATGCACAAGAAAAACATATTATAATGGTATCT  339

seq1  TTGTTATCTTTCTGTACCTGAAAAAAGGGAAATTAGGGAAGAAAGAATGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTTTCTGTACCTGAAAAAAGGGAAATTAGGGAAGAAAGAATGT  389

seq1  ACTTTGTCTTAAAATTTCAGAGAGACCGGGGCCATCATGGTGGGGAAGAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCTTAAAATTTCAGAGAGACCGGGGCCATCATGGTGGGGAAGAC  439

seq1  ATGGCTGTAGGCAGAGAAACATGGTGGTAGGAACCAAATGCTGACCAGCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTAGGCAGAGAAACATGGTGGTAGGAACCAAATGCTGACCAGCT  489

seq1  GTGTCTATAGTCTATAGCACTGAGCACAGAATTGGAACTTGCCTATAAAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATAGTCTATAGCACTGAGCACAGAATTGGAACTTGCCTATAAAG  539

seq1  CCTCAAGACCTGACCACAGTGACACAGTTGTCCCTTAAGGCTCTACTTCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGACCTGACCACAGTGACACAGTTGTCCCTTAAGGCTCTACTTCC  589

seq1  TAAGTTTCCACAACCTTCCTAAACATTGCCACCATTTAGAGATTGAGTTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCCACAACCTTCCTAAACATTGCCACCATTTAGAGATTGAGTTT  639

seq1  TCAAATGCTTGAGCCCATGGAAGACATTTCACATTCAGACCACAACAGTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTGAGCCCATGGAAGACATTTCACATTCAGACCACAACAGTT  689

seq1  GGTACTGAGATACATGTGAAGAATAAGAAAATGAATACTTGGAATTATCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGAGATACATGTGAAGAATAAGAAAATGAATACTTGGAATTATCA  739

seq1  TTATTGACGAGGAGGCTGAGAAATACCTTTTTCTAAATGACAGTATCTGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACGAGGAGGCTGAGAAATACCTTTTTCTAAATGACAGTATCTGG  789

seq1  AAATAATGTTTCAGTTCTTTTTCTTCTCCATGAAGGCAAGGAAGGACACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTTTCAGTTCTTTTTCTTCTCCATGAAGGCAAGGAAGGACACA  839

seq1  TTTATTTGATTTAAAAAAACAAAACAAAACAAACAAAAAAAAAAAACAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGATTTAAAAAAACAAAACAAAACAAACAAAAAAAAAAAACAAA  889

seq1  AAACAAAAACCACAAACCAATAGGTAAAGCTGATGCTGTTTTTCAGTCTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACCACAAACCAATAGGTAAAGCTGATGCTGTTTTTCAGTCTG  939

seq1  TGAGGTTTATAGCTTCTCTGTGACATTCAGTTTACCATGTCCAAGGATGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTATAGCTTCTCTGTGACATTCAGTTTACCATGTCCAAGGATGT  989

seq1  TGATGAATAAAAATGTGTGAATGGAATTC  1017
      |||||||||||||||||||||||||||||
seq2  TGATGAATAAAAATGTGTGAATGGAATTC  1018