BAC Information

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BAC

Clone NameB6Ng01-315E18
Chromosome10 (Build37)
Map Location 54,809,811 - 55,020,351
singlet/doubletdoublet
Overlap geneLOC382460
Upstream geneLOC100041898
Downstream geneLOC100041927, D630037F22Rik, 1700060H10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315E18.bB6Ng01-315E18.g
ACCGA105984GA105985
length1,1161,107
definitionB6Ng01-315E18.b B6Ng01-315E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,809,811 - 54,810,541)(55,019,230 - 55,020,351)
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggagaatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttacttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagacccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggatcatgtagagactgccatatccagggatccaccccataacc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtaaaattatttaaatttaaataaaaatcctcatagggta
ttcccagacaagttgacaatcatatatagccgtcacataatttattaaat
attaaattcacaacctaaatattctggtgtgggttaatcgttctgattcc
cctgaaacttattatggacaaaccagttctttttattctaatcttaaata
ctaatataagctgaatatatatatatatctccacataggtttgtctacat
catctgtctatattaa
gaattccatggtgtgctaattgcatctcagcaaagctccattaagatgaa
ggaaagtgaatgttgtgacactgagtttctgtttcagtatttttccttct
cctaaacttgctgaggtctcccaaatataacagatgattattcccttctt
tcagctggctttccacacatcgacagatgccacggcaacttctgactgca
ccgagtgaacagactagaatgaattcaacattgagaccgaccggtaaagc
cagctgctcagtacatgagatcctgagattgcttgtatgtctaggcactt
ctgttcacacctgttcagctggcccaggcttagtgatctcttttcaaggc
ccacagagatagttttgttttgttatgccaactttccccctttctgctat
gtcttccttcacttgttctttaagtcaaacactatctgtttcagagctcc
agaaacgtattcaacctattttcagttgtgatgtcccctatttcaataat
ataaccccttttccccactgttatgatatatgaagttggagtatgaggca
gtgcattgtggaggtgggatttttcatgatatacatggtatttgataata
tataaaatatttgataatatataaaaagataatacaaatcagtagcattt
taaaatgtagagaatgagccactggtgaactaaaggaaaagcaagcacac
ttaaattgtctttgaaaaaaaatcagggaaaacagtggtaaattgtgtca
aatgctgttgtatcaataaaagttcatttacttaaagcttgcaactcgat
ggcttttagtatattcagcacctgtaatttcatgtggggttgggaataag
tgactgaccaattctactttttttgaaatttaactgaagtttaagtcact
atcactattctgggccaggcaaacaactagtagctctataccatcccctc
ttctgtagccaacatggaaatgatggtgatttgtccaattttgaaatatt
tgactccctaggccactgaaggagtgaacactactcatctctggtcatgc
gttcaaaacgcacagtgggattcaccttactaagaaggaagagaccgaaa
attttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54809811_54810541
seq2: B6Ng01-315E18.b_440_1165

seq1  GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT  50

seq1  CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT  100

seq1  TTCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA  150

seq1  CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA  200

seq1  GACCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACAT  250

seq1  GAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA  300

seq1  GAATTGGGAACAAAACACCCATGGAAGGAGTTACAAAGACAAAGTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGAACAAAACACCCATGGAAGGAGTTACAAAGACAAAGTTTGGA  350

seq1  GCTGAGATGAAAGGATGGATCATGTAGAGACTGCCATATCCAGGGATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATGAAAGGATGGATCATGTAGAGACTGCCATATCCAGGGATCCA  400

seq1  CCCCATAACCAGCATCCAAACGCTGACACCATTGCATATACTAGCAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAACCAGCATCCAAACGCTGACACCATTGCATATACTAGCAAGAT  450

seq1  TTTATCGAAAGGACCCAGATGTAAAATTATTTAAATTTAAATAAAAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGAAAGGACCCAGATGTAAAATTATTTAAATTTAAATAAAAATCC  500

seq1  TCATAGGGTATTCCCAGACAAGTTGACAATCATATATAGCCGTCACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGGTATTCCCAGACAAGTTGACAATCATATATAGCCGTCACATAA  550

seq1  TTTATTAAATATTAAATTCACAACCTAAATA-TCTGGTGTTGGTTAATCG  599
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TTTATTAAATATTAAATTCACAACCTAAATATTCTGGTGTGGGTTAATCG  600

seq1  TTCTGATTTCCCCTGAAACTTTATTATTGACAAACCAGTTC-TTTTATTC  648
      |||||| |||||||||||| ||||||| ||||||||||||| ||||||||
seq2  TTCTGA-TTCCCCTGAAAC-TTATTATGGACAAACCAGTTCTTTTTATTC  648

seq1  TAATCCTAAATACTAATATTAAGCCTTGATTTATATAT-TATATATCTCA  697
      ||||| |||||||||||| |||||  |||   |||||| |||||||||| 
seq2  TAATCTTAAATACTAATA-TAAGC--TGA---ATATATATATATATCTCC  692

seq1  CAATAAGTTTGTCTACATCATCTGTCTATATTAA  731
        ||| ||||||||||||||||||||||||||||
seq2  ACATAGGTTTGTCTACATCATCTGTCTATATTAA  726

seq1: chr10_55019230_55020351
seq2: B6Ng01-315E18.g_70_1176 (reverse)

seq1  GGAAAATTTTTCTGTCTCTTTCTTTCCTTAAGTAAGTGAAATCCCACTGT  50
      |||||| ||||| ||||||| |||  ||| ||||||   |||||||||||
seq2  GGAAAA-TTTTCGGTCTCTTCCTT--CTT-AGTAAGGTGAATCCCACTGT  46

seq1  GCTGTTTTGAAACGCATGACCCAGAGATGAGTAGGTGTTCACTCTTTCAG  100
      || |||||| ||||||||| ||||||||||||| |||||||||| |||||
seq2  GC-GTTTTG-AACGCATGA-CCAGAGATGAGTA-GTGTTCACTCCTTCAG  92

seq1  TGGCCTAGGGAGTCAAAATTATTTTCAAAATTGGACAAATCACCATCATT  150
      |||||||||||||||||  || ||||||||||||||||||||||||||||
seq2  TGGCCTAGGGAGTCAAA--TA-TTTCAAAATTGGACAAATCACCATCATT  139

seq1  TCCAATGTTGGCTACAGAAGAGGGGATTGGTAATAGAGCTACTAGTTGTT  200
      ||| |||||||||||||||||||||| |||| ||||||||||||||||||
seq2  TCC-ATGTTGGCTACAGAAGAGGGGA-TGGT-ATAGAGCTACTAGTTGTT  186

seq1  TGCCTTGGCCAGAATAGTGATAGTGACCTTAAACTTCAGTTAAATTTCAA  250
      ||||| | |||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCTGGCCCAGAATAGTGATAGTGA-CTTAAACTTCAGTTAAATTTCAA  235

seq1  AAAAAGTAGAATTGGTCAGTCACTTATTCCCAACCCCACATGAAATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGAATTGGTCAGTCACTTATTCCCAACCCCACATGAAATTACA  285

seq1  GGTGCTGAATATACTAAAAGCCATCGAGTTGCAAGCTTTAAGTAAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAATATACTAAAAGCCATCGAGTTGCAAGCTTTAAGTAAATGAA  335

seq1  CTTTTATTGATACAACAGCATTTGACACAATTTACCACTGTTTTCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGATACAACAGCATTTGACACAATTTACCACTGTTTTCCCTGA  385

seq1  TTTTTTTTCAAAGACAATTTAAGTGTGCTTGCTTTTCCTTTAGTTCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAAAGACAATTTAAGTGTGCTTGCTTTTCCTTTAGTTCACCA  435

seq1  GTGGCTCATTCTCTACATTTTAAAATGCTACTGATTTGTATTATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCATTCTCTACATTTTAAAATGCTACTGATTTGTATTATCTTTTT  485

seq1  ATATATTATCAAATATTTTATATATTATCAAATACCATGTATATCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATCAAATATTTTATATATTATCAAATACCATGTATATCATGAA  535

seq1  AAATCCCACCTCCACAATGCACTGCCTCATACTCCAACTTCATATATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCACCTCCACAATGCACTGCCTCATACTCCAACTTCATATATCAT  585

seq1  AACAGTGGGGAAAAGGGGTTATATTATTGAAATAGGGGACATCACAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGGGAAAAGGGGTTATATTATTGAAATAGGGGACATCACAACTG  635

seq1  AAAATAGGTTGAATACGTTTCTGGAGCTCTGAAACAGATAGTGTTTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGTTGAATACGTTTCTGGAGCTCTGAAACAGATAGTGTTTGACT  685

seq1  TAAAGAACAAGTGAAGGAAGACATAGCAGAAAGGGGGAAAGTTGGCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAAGTGAAGGAAGACATAGCAGAAAGGGGGAAAGTTGGCATAA  735

seq1  CAAAACAAAACTATCTCTGTGGGCCTTGAAAAGAGATCACTAAGCCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACTATCTCTGTGGGCCTTGAAAAGAGATCACTAAGCCTGGG  785

seq1  CCAGCTGAACAGGTGTGAACAGAAGTGCCTAGACATACAAGCAATCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAACAGGTGTGAACAGAAGTGCCTAGACATACAAGCAATCTCAG  835

seq1  GATCTCATGTACTGAGCAGCTGGCTTTACCGGTCGGTCTCAATGTTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATGTACTGAGCAGCTGGCTTTACCGGTCGGTCTCAATGTTGAAT  885

seq1  TCATTCTAGTCTGTTCACTCGGTGCAGTCAGAAGTTGCCGTGGCATCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAGTCTGTTCACTCGGTGCAGTCAGAAGTTGCCGTGGCATCTGT  935

seq1  CGATGTGTGGAAAGCCAGCTGAAAGAAGGGAATAATCATCTGTTATATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGTGGAAAGCCAGCTGAAAGAAGGGAATAATCATCTGTTATATTT  985

seq1  GGGAGACCTCAGCAAGTTTAGGAGAAGGAAAAATACTGAAACAGAAACTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCTCAGCAAGTTTAGGAGAAGGAAAAATACTGAAACAGAAACTC  1035

seq1  AGTGTCACAACATTCACTTTCCTTCATCTTAATGGAGCTTTGCTGAGATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACAACATTCACTTTCCTTCATCTTAATGGAGCTTTGCTGAGATG  1085

seq1  CAATTAGCACACCATGGAATTC  1122
      ||||||||||||||||||||||
seq2  CAATTAGCACACCATGGAATTC  1107