BAC Information

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BAC

Clone NameB6Ng01-315J17
Chromosome10 (Build37)
Map Location 77,316,919 - 77,511,016
singlet/doubletdoublet
Overlap geneC330046G03Rik, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, EG544710
Downstream geneIcosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315J17.bB6Ng01-315J17.g
ACCGA106211GA106212
length449626
definitionB6Ng01-315J17.b B6Ng01-315J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,316,919 - 77,317,373)(77,510,392 - 77,511,016)
sequence
ctctgaagggagtcagagaaattacctgacctaatttaccatcagaatac
ctaagtggagtccctagtgaccaaccagtcttctgcctcccagcccttga
gtgatctcagaaagacagcatccagccatgccagcatccagtttagcaga
agcccaaggcaggaaacggtggcccagtagtcgatcaatcagttgacggg
aacccaccagcctcgcctgttccacacagcccagaagttaggaacgatgg
agcaattgttcaaagatgggaagacgtttagagagagaaaaccacagtga
ggctgctggaaaggagcgctgtgtggaagaggggcataagactcacagcc
attagccgggcagtggtggtgcacgtctttaatcccagcacttggaaggc
agagacaggtggatttctgagtttgaggccagcctggtctagagtgaat
gaattcacacctttgcgtccctagggctggaattgaaggtatgtgctacc
acacccagccctgtttgttttttaagattgggcctagctctgtagcctag
gctgaccttaaattcatggcaatcctgcctctgcctactggattgtggga
ttataggtataaaacatcacactcaatatcactaatgccttttcatggtt
tggctttttttgttgttgttgatgttttatgtggaaacatttttgtatta
agacagacctattggttttttaaaaaatattttaaattaaattaattaaa
ttatatttatttgagtatatatgtgtatacatgcacttgcctggcatgtt
aaacatagtagtcaagttctgaagaagaaaaaaaacccaaaaaaacaaaa
caaaatgctcggtggggaaaggtacttcccctcccccacctcccaccccc
aaaccctaaagacctgagttaagtccatgaaacccacacggtggaaggag
agagccaaccaattcccacattctgttctcctctgacctccaagcactct
ctctctctctctctctctctctctctctctctctctctctctctctaaaa
actctgtgtttaggctggagagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77316919_77317373
seq2: B6Ng01-315J17.b_46_500

seq1  GAATTCCTCTGAAGGGAGTCAGAGAAATTACCTGACCTAATTTACCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGAAGGGAGTCAGAGAAATTACCTGACCTAATTTACCATCA  50

seq1  GAATACCTAAGTGGAGTCCCTAGTGACCAACCAGTCTTCTGCCTCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCTAAGTGGAGTCCCTAGTGACCAACCAGTCTTCTGCCTCCCAGC  100

seq1  CCTTGAGTGATCTCAGAAAGACAGCATCCAGCCATGCCAGCATCCAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTGATCTCAGAAAGACAGCATCCAGCCATGCCAGCATCCAGTTT  150

seq1  AGCAGAAGCCCAAGGCAGGAAACGGTGGCCCAGTAGTCGATCAATCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGCCCAAGGCAGGAAACGGTGGCCCAGTAGTCGATCAATCAGTT  200

seq1  GACGGGAACCCACCAGCCTCGCCTGTTCCACACAGCCCAGAAGTTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGAACCCACCAGCCTCGCCTGTTCCACACAGCCCAGAAGTTAGGAA  250

seq1  CGATGGAGCAATTGTTCAAAGATGGGAAGACGTTTAGAGAGAGAAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGAGCAATTGTTCAAAGATGGGAAGACGTTTAGAGAGAGAAAACCA  300

seq1  CAGTGAGGCTGCTGGAAAGGAGCGCTGTGTGGAAGAGGGGCATAAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGCTGCTGGAAAGGAGCGCTGTGTGGAAGAGGGGCATAAGACTC  350

seq1  ACAGCCATTAGCCGGGCAGTGGTGGTGCACGTCTTTAATCCCAGCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATTAGCCGGGCAGTGGTGGTGCACGTCTTTAATCCCAGCACTTG  400

seq1  GAAGGCAGAGACAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGACAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAGAG  450

seq1  TGAAT  455
      |||||
seq2  TGAAT  455

seq1: chr10_77510392_77511016
seq2: B6Ng01-315J17.g_67_692 (reverse)

seq1  CCATCTCTCCAGCCTCAACACAG-GATTTTAAAGAGAGAGAGAGAGAGAG  49
      ||||||||||||||| ||||||| | ||||| ||||||||||||||||||
seq2  CCATCTCTCCAGCCTAAACACAGAGTTTTTAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCTTGGAGGTCAGAGGAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCTTGGAGGTCAGAGGAGA  100

seq1  ACAGAATGTGGGAATTGGTTGGCTCTCTCCTTCCACCGTGTGGGTTTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTGGGAATTGGTTGGCTCTCTCCTTCCACCGTGTGGGTTTCAT  150

seq1  GGACTTAACTCAGGTCTTTAGGGTTTGGGGGTGGGAGGTGGGGGAGGGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAACTCAGGTCTTTAGGGTTTGGGGGTGGGAGGTGGGGGAGGGGA  200

seq1  AGTACCTTTCCCCACCGAGCATTTTGTTTTGTTTTTTTGGGTTTTTTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTTTCCCCACCGAGCATTTTGTTTTGTTTTTTTGGGTTTTTTTTC  250

seq1  TTCTTCAGAACTTGACTACTATGTTTAACATGCCAGGCAAGTGCATGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAACTTGACTACTATGTTTAACATGCCAGGCAAGTGCATGTAT  300

seq1  ACACATATATACTCAAATAAATATAATTTAATTAATTTAATTTAAAATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATACTCAAATAAATATAATTTAATTAATTTAATTTAAAATAT  350

seq1  TTTTTAAAAAACCAATAGGTCTGTCTTAATACAAAAATGTTTCCACATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAACCAATAGGTCTGTCTTAATACAAAAATGTTTCCACATAA  400

seq1  AACATCAACAACAACAAAAAAAGCCAAACCATGAAAAGGCATTAGTGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAACAACAACAAAAAAAGCCAAACCATGAAAAGGCATTAGTGATA  450

seq1  TTGAGTGTGATGTTTTATACCTATAATCCCACAATCCAGTAGGCAGAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTGATGTTTTATACCTATAATCCCACAATCCAGTAGGCAGAGGC  500

seq1  AGGATTGCCATGAATTTAAGGTCAGCCTAGGCTACAGAGCTAGGCCCAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCCATGAATTTAAGGTCAGCCTAGGCTACAGAGCTAGGCCCAAT  550

seq1  CTTAAAAAACAAACAGGGCTGGGTGTGGTAGCACATACCTTCAATTCCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAACAAACAGGGCTGGGTGTGGTAGCACATACCTTCAATTCCAG  600

seq1  CCCTAGGGACGCAAAGGTGTGAATTC  625
      ||||||||||||||||||||||||||
seq2  CCCTAGGGACGCAAAGGTGTGAATTC  626