BAC Information

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BAC

Clone NameB6Ng01-319N19
Chromosome10 (Build37)
Map Location 83,188,376 - 83,346,086
singlet/doubletdoublet
Overlap gene1500009L16Rik
Upstream geneHcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2
Downstream geneLOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319N19.bB6Ng01-319N19.g
ACCGA109387GA109388
length1,1381,090
definitionB6Ng01-319N19.b B6Ng01-319N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,188,376 - 83,189,525)(83,344,987 - 83,346,086)
sequence
gaattcactcttcctgaggcaactaggccttgggatacaggaatttagca
ttattatacatagcaacagaccaaatctcaacactccagtcaggagggtc
agaagttcaaggccatccacactagtccctcacttcatagtgagttcaag
ccatctcaaaatcaagtaaacaaataaaataacaacaacaacaacaaaac
aactatctgccacaaacaaacaaaaacaaacaaacaaacctcaaatcctc
caatctttctgctgctaatcttggtaatcctacagtcagggacagggtag
gaggctcactcccaagttcatggccagcctggtctatatggggagttcca
gaatagtcagactgtctcttaaggggaaaataaaaatcctatttcttggg
atcaagaaaaaaaaaagattctctttgcaagcattaggttgacttttccc
cttttgagtagctctctccctgggtaaagggaagtgcagctccatcggaa
aggatccctccgagtgcccgtccttaatgatctgcttttgtttgtgaagg
acaggcatgctagagcacgctgttctctggcttgctctttgctaaaaatt
actttatgttcagagagagcagggcagggagtggtacatcccgtagaccg
gaaggagaggacgctgtgagggggcgtgttggcgacatcatcgctaacca
ggctctgcccttggctttgagaagttcttctcaaacagtccccagcctgt
gtgtccagctggctgccttcggcatttggtcattgttattttctgtctgt
cagctggtggtaggaatttcggtttctgaaagggaacacatcaagatgag
acgtggaagagcagagagggataccccaacacagggatggttgctccagc
tgcaaaccgtggctttgctatcacagtcagtaaaggcccgggctgcagac
ctgtccgagcctggagatcccgtgaatggatgagcttgtcctgactctag
gtatgacctgagtgtagttttaaaatgtccaaggatcctgccttccatat
ttcatactttccagtagctactgaagcacaagatgttaattaaaatgcaa
tgagactgatgagatgaaccttggactgagctcaggct
gaattcagccattttccaagtctctctgccagtacatggcaaagtcggga
tgccaagctcaagacaccccctcccccatctcagagtgaatgccctcact
gatgtgttacccttgccaagggagtcagggagcacatctatgagacaatg
tcctccctggccttctccaagaatctgcaggcttccatcagctgtttctg
taaggaaggcaggacaagcagagagcaaatagcagaatgctttgggttct
aaaagtcaaatttctgccattcctgctttgggggtttgtgaaatccctgg
tgacctgtagcagatcccatgcattccaggagcgtgtaatgaaaacaacc
tggtctccccaagtgactggaaaagagtgcagtggctggctctctcaaag
tcaagagttgtgttatttctcagctccttgcagagagtcaagtcaggctg
cctcccccagacgaaatgaggggccaccatggcgggcgcccttcctttgg
cccagattcccatcctacaagcctccatgtgagaggcccttgggaatggc
ttgttgtttggaatttaaacatccccacttcacctagacacagagaacta
ttttttaggtatgccaagaattaaccagcgaggacgtccgtttaattgta
tgtgaaacagaagctaatagtatcagcaggctggccgccttcaccgatag
cgtgaggcaagaagggctgtcagaaagtgatcaatggacgggctttgagc
agacctacctggggtaaaagcactcatgtggccattgtttcctacattca
tcccttataggcaagaacctaactttctgtctgcgttcactgtgtgagag
gaacatctttgatctctcagatctgcaagaatcccaaagggaagcaagcg
gtggttttgattattatcttttaagtctagatttccttagtgagatttgg
tatgaaattcatccacgcagtgggggaggtgggcgactgtgtccacgtct
gggtctcattaaggcgcagatatttttcactaggcagtgactggagcacc
aatgcctgatagctggagatttcagaactgctgtttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83188376_83189525
seq2: B6Ng01-319N19.b_46_1183

seq1  GAATTCACTCTTCCTGAGGCAACTAGGCCTTGGGATACAGGAATTTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTCCTGAGGCAACTAGGCCTTGGGATACAGGAATTTAGCA  50

seq1  TTATTATACATAGCAACAGACCAAATCTCAACACTCCAGTCAGGAGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATACATAGCAACAGACCAAATCTCAACACTCCAGTCAGGAGGGTC  100

seq1  AGAAGTTCAAGGCCATCCACACTAGTCCCTCACTTCATAGTGAGTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCAAGGCCATCCACACTAGTCCCTCACTTCATAGTGAGTTCAAG  150

seq1  CCATCTCAAAATCAAGTAAACAAATAAAATAACAACAACAACAACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAAAATCAAGTAAACAAATAAAATAACAACAACAACAACAAAAC  200

seq1  AACTATCTGCCACAAACAAACAAAAACAAACAAACAAACCTCAAATCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTGCCACAAACAAACAAAAACAAACAAACAAACCTCAAATCCTC  250

seq1  CAATCTTTCTGCTGCTAATCTTGGTAATCCTACAGTCAGGGACAGGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTCTGCTGCTAATCTTGGTAATCCTACAGTCAGGGACAGGGTAG  300

seq1  GAGGCTCACTCCCAAGTTCATGGCCAGCCTGGTCTATATGGGGAGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCACTCCCAAGTTCATGGCCAGCCTGGTCTATATGGGGAGTTCCA  350

seq1  GAATAGTCAGACTGTCTCTTAAGGGGAAAATAAAAATCCTATTTCTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTCAGACTGTCTCTTAAGGGGAAAATAAAAATCCTATTTCTTGGG  400

seq1  ATCAAGAAAAAAAAAAGATTCTCTTTGCAAGCATTAGGTTGACTTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAAAAAAAAGATTCTCTTTGCAAGCATTAGGTTGACTTTTCCC  450

seq1  CTTTTGAGTAGCTCTCTCCCTGGGTAAAGGGAAGTGCAGCTCCATCGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGTAGCTCTCTCCCTGGGTAAAGGGAAGTGCAGCTCCATCGGAA  500

seq1  AGGATCCCTCCGAGTGCCCGTCCTTAATGATCTGCTTTTGTTTGTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCTCCGAGTGCCCGTCCTTAATGATCTGCTTTTGTTTGTGAAGG  550

seq1  ACAGGCATGCTAGAGCACGCTGTTCTCTGGCTTGCTCTTTGCTAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGCTAGAGCACGCTGTTCTCTGGCTTGCTCTTTGCTAAAAATT  600

seq1  ACTTTATGTTCAGAGAGAGCAGGGCAGGGAGTGGTACATCCCGTAGACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGTTCAGAGAGAGCAGGGCAGGGAGTGGTACATCCCGTAGACCG  650

seq1  GAAGGAGAGGACGCTGTGAGGGGGCGTGTTGGCGACATCATCGCTAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGGACGCTGTGAGGGGGCGTGTTGGCGACATCATCGCTAACCA  700

seq1  GGCTCTGCCCTTGGCTTTGAGAAGTTCTTCTCAAACAGTCCCCAGCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCCCTTGGCTTTGAGAAGTTCTTCTCAAACAGTCCCCAGCCTGT  750

seq1  GTGTCCAGCTGGCTGCCTTCGGCATTTGGTCATTGTTATTTTCTGTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGCTGGCTGCCTTCGGCATTTGGTCATTGTTATTTTCTGTCTGT  800

seq1  CAGCTGGTGGTAGGAATTTCGGTTTCTGAAAGGGAACACATCAAGATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGGTAGGAATTTCGGTTTCTGAAAGGGAACACATCAAGATGAG  850

seq1  ACGTGGAAGAGCAGAGAGGGATACCCCAACACAGGGATGGTTGCTCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAAGAGCAGAGAGGGATACCCCAACACAGGGATGGTTGCTCCAGC  900

seq1  TGCAAACCGTGGCTTTGCTATCACAGTCAGT-AAGGGCCGGGCTGCAGAC  949
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TGCAAACCGTGGCTTTGCTATCACAGTCAGTAAAGGCCCGGGCTGCAGAC  950

seq1  CTGTCCCGAGCCTGGGAGATCCCGTGAATGGATGAGGCTGTCCTGGACCT  999
      |||| |||||||| ||||||||||||||||||||||  |||||||   ||
seq2  CTGT-CCGAGCCT-GGAGATCCCGTGAATGGATGAGCTTGTCCTG--ACT  996

seq1  CTAGGTATGAACTGAGTGTAGTTTTTAAAATGTCCCAGGAATCCTGCTTT  1049
      |||||||||| |||||||||| ||||||||||||| ||| ||||||| ||
seq2  CTAGGTATGACCTGAGTGTAG-TTTTAAAATGTCCAAGG-ATCCTGCCTT  1044

seq1  CAATATTTCATACTTTTCAGTAGCCATACTGAAGAAAAAGAATGTAATTA  1099
      | |||||||||||||| |||||||  |||||||| | ||| |||| | | 
seq2  CCATATTTCATACTTTCCAGTAGC--TACTGAAGCACAAG-ATGTTAATT  1091

seq1  AAAAGGCAAATGGAGATGAAGGAGAGTGACCTTGGACTGGAAGCTCAGGC  1149
      |||| ||||   ||||   | ||||   |||||||||||  |||||||||
seq2  AAAATGCAA--TGAGACTGATGAGATGAACCTTGGACTG--AGCTCAGGC  1137

seq1  T  1150
      |
seq2  T  1138

seq1: chr10_83344987_83346086
seq2: B6Ng01-319N19.g_69_1158 (reverse)

seq1  TTTTAAACAAGCAGTTCCTGGAAATCTCCAGCTTTATCAAGGAATTTGGT  50
      |||||||| ||||||||   ||||||||||||  |||| ||| |||  | 
seq2  TTTTAAAC-AGCAGTTC--TGAAATCTCCAGC--TATC-AGGCATT--GG  42

seq1  TGCTTCAGTTCACTGCCTAGTG-AAAATATCTGCGCCTTAATGAGGCCCA  99
      |||| ||| ||||||||||||| |||||||||||||||||||||| ||||
seq2  TGCTCCAG-TCACTGCCTAGTGAAAAATATCTGCGCCTTAATGAGACCCA  91

seq1  GACGTGGACACAGTCGCCCACCTCCCCCACTGCGTGGATGAATTTCATAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGACACAGTCGCCCACCTCCCCCACTGCGTGGATGAATTTCATAC  141

seq1  CAAATCTCACCTAAGGAATTCTAGACTTTAAAGATAATAATCAAAACCAC  199
      ||||||||| |||||||| ||||||||| |||||||||||||||||||||
seq2  CAAATCTCA-CTAAGGAAATCTAGACTTAAAAGATAATAATCAAAACCAC  190

seq1  CGCTTGCTTCCCTTTGGGATTCTTGCAGATCTGAGAGATCAAAGATGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGCTTCCCTTTGGGATTCTTGCAGATCTGAGAGATCAAAGATGTTC  240

seq1  CTCTCACACAGTGAACGCAGACAGAAAGTTAGGTTTCTTGCCTATAAGGG  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTCACACAGTGAACGCAGACAGAAAGTTAGG-TTCTTGCCTATAAGGG  289

seq1  ATGAATGTAGGAAACAATGGCCACATGAGTGCTTTTACCCCAGGTAGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTAGGAAACAATGGCCACATGAGTGCTTTTACCCCAGGTAGGTC  339

seq1  TGCTCAAAGCCCGTCCATTGATCACTTTCTGACAGCCCTTCTTGCCTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAGCCCGTCCATTGATCACTTTCTGACAGCCCTTCTTGCCTCAC  389

seq1  GCTATCGGTGAAGGCGGCCAGCCTGCTGATACTATTAGCTTCTGTTTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCGGTGAAGGCGGCCAGCCTGCTGATACTATTAGCTTCTGTTTCAC  439

seq1  ATACAATTAAACGGACGTCCTCGCTGGTTAATTCTTGGCATACCTAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTAAACGGACGTCCTCGCTGGTTAATTCTTGGCATACCTAAAAA  489

seq1  ATAGTTCTCTGTGTCTAGGTGAAGTGGGGATGTTTAAATTCCAAACAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTCTGTGTCTAGGTGAAGTGGGGATGTTTAAATTCCAAACAACA  539

seq1  AGCCATTCCCAAGGGCCTCTCACATGGAGGCTTGTAGGATGGGAATCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCCCAAGGGCCTCTCACATGGAGGCTTGTAGGATGGGAATCTGG  589

seq1  GCCAAAGGAAGGGCGCCCGCCATGGTGGCCCCTCATTTCGTCTGGGGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGAAGGGCGCCCGCCATGGTGGCCCCTCATTTCGTCTGGGGGAG  639

seq1  GCAGCCTGACTTGACTCTCTGCAAGGAGCTGAGAAATAACACAACTCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGACTTGACTCTCTGCAAGGAGCTGAGAAATAACACAACTCTTG  689

seq1  ACTTTGAGAGAGCCAGCCACTGCACTCTTTTCCAGTCACTTGGGGAGACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAGAGCCAGCCACTGCACTCTTTTCCAGTCACTTGGGGAGACC  739

seq1  AGGTTGTTTTCATTACACGCTCCTGGAATGCATGGGATCTGCTACAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTTTCATTACACGCTCCTGGAATGCATGGGATCTGCTACAGGTC  789

seq1  ACCAGGGATTTCACAAACCCCCAAAGCAGGAATGGCAGAAATTTGACTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGATTTCACAAACCCCCAAAGCAGGAATGGCAGAAATTTGACTTT  839

seq1  TAGAACCCAAAGCATTCTGCTATTTGCTCTCTGCTTGTCCTGCCTTCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCAAAGCATTCTGCTATTTGCTCTCTGCTTGTCCTGCCTTCCTT  889

seq1  ACAGAAACAGCTGATGGAAGCCTGCAGATTCTTGGAGAAGGCCAGGGAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACAGCTGATGGAAGCCTGCAGATTCTTGGAGAAGGCCAGGGAGG  939

seq1  ACATTGTCTCATAGATGTGCTCCCTGACTCCCTTGGCAAGGGTAACACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTCATAGATGTGCTCCCTGACTCCCTTGGCAAGGGTAACACAT  989

seq1  CAGTGAGGGCATTCACTCTGAGATGGGGGAGGGGGTGTCTTGAGCTTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGCATTCACTCTGAGATGGGGGAGGGGGTGTCTTGAGCTTGGC  1039

seq1  ATCCCGACTTTGCCATGTACTGGCAGAGAGACTTGGAAAATGGCTGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGACTTTGCCATGTACTGGCAGAGAGACTTGGAAAATGGCTGAATT  1089

seq1  C  1100
      |
seq2  C  1090