BAC Information

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BAC

Clone NameB6Ng01-321D02
Chromosome10 (Build37)
Map Location 121,317,331 - 121,467,346
singlet/doubletdoublet
Overlap geneSrgap1
Upstream geneLOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403
Downstream geneEG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a, Ppm1h, D630033A02Rik, Mon2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321D02.bB6Ng01-321D02.g
ACCGA110367GA110368
length5911,081
definitionB6Ng01-321D02.b B6Ng01-321D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,466,750 - 121,467,346)(121,317,331 - 121,318,407)
sequence
tcaggttgtagaataagagtaccataagattgtaacagagccaccccaga
caccctgtttttacaagttaagactttaagcaagagtatgcatacttgta
gtagtctagaaaggtatctgagcagggatattagaagaacccaaaatcct
ctgaaaagacgtcgttagagtctacggctgactttaaacctctgcattgt
ctgaagtctcttacttgtaagccattgcaacctaaggctctccgatagcc
aacaaagtacaaagctcagaagcagctgccagctgctgtttacaaagcca
aatgataaaaactcccttaataaaagtaatgtgctgacagaagtagttct
tgtttaaaacacaactagggtgtttactgtgtctccctgagacagctctg
cagagtaagtttcagccaccgggaagtcgggcaaaacattgcttccggaa
agaaatgtgggtgtatttacacagaaaccaccataaaattttagaagagc
ctttttatgaaggtctctcatgttacagagctaaactgggaagttgaaga
catgggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggg
gaattcacacaaatcctttgaacaaaagagattgtctgggactctggacc
ctactggctagagataaccagtctcccaaagcacagagcaatgcagaaat
gcagaaaataacaaaatatggggaaagacagagagcctgaatactaaaga
agttttagggcttataaaaattatgaaagtaattacattcggctcagcgt
agcattaagggcttcattttaggagtaattacacagtgaacacttttaat
gggaagaaccagtctatggaacagcagtttggggtcggtactggcgatac
taacaaaatctgtcttcacttcagccttcatgtctcacactggggtctca
tctgggaggacaacatgaggtcttcccacagacccaaagtcacggagcca
gtcaaatcacaccacctcagagccgttgctaaagaaagacgaaatgcaaa
gcagaggcagaaacacggaagggagctgatctcaatcacttctgggtgca
gaaagctctgccagaaggaaatgtaatagaacttcgggcaacaattctca
acctttgggtcatgacccctttgtgggggttcaaatgacccttttctagg
ggtcgcatatcagaagatatcctgcatgtcagatatttacattatgactc
ataatagtaacagaatcgcagttacgaagtagcaaagaaaataattttat
ggctgagggtcagaacaacatgaggaactgtattaaacgggttgtagcgt
caggaacattgagaacctctgtaaggagaataaggtaagacataactgga
tggggtggcgttaacgaggagtttagcgtttctttaacctaagtgtggcc
ccatcccaagaagctcatcactgttaataaaatatcctaaatccaagtgt
acttaataacctgacctattgataccataatgtatatcaggctaccctta
aatggtggtggagcacatttggtctagcccttaggtaaatcacctaatac
aaggctcatttatatttagggtgggggcacagagaggatgggatgctttg
aggccatggccaggatgaggaaactaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_121466750_121467346
seq2: B6Ng01-321D02.b_48_644 (reverse)

seq1  CACACACACACACACACACACACACACACACACTTCCCATGTCTTCAACT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACACACACACACACACACACACACACTTCCCATGTCTTCAACT  50

seq1  TCCCAGTTTAGCTCTGTAACATGAGAGACCTTCATAAAAAGGCTCTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTTAGCTCTGTAACATGAGAGACCTTCATAAAAAGGCTCTTCTA  100

seq1  AAATTTTATGGTGGTTTCTGTGTAAATACACCCACATTTCTTTCCGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATGGTGGTTTCTGTGTAAATACACCCACATTTCTTTCCGGAAG  150

seq1  CAATGTTTTGCCCGACTTCCCGGTGGCTGAAACTTACTCTGCAGAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTTGCCCGACTTCCCGGTGGCTGAAACTTACTCTGCAGAGCTGT  200

seq1  CTCAGGGAGACACAGTAAACACCCTAGTTGTGTTTTAAACAAGAACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGACACAGTAAACACCCTAGTTGTGTTTTAAACAAGAACTACT  250

seq1  TCTGTCAGCACATTACTTTTATTAAGGGAGTTTTTATCATTTGGCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGCACATTACTTTTATTAAGGGAGTTTTTATCATTTGGCTTTGT  300

seq1  AAACAGCAGCTGGCAGCTGCTTCTGAGCTTTGTACTTTGTTGGCTATCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAGCTGGCAGCTGCTTCTGAGCTTTGTACTTTGTTGGCTATCGG  350

seq1  AGAGCCTTAGGTTGCAATGGCTTACAAGTAAGAGACTTCAGACAATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTAGGTTGCAATGGCTTACAAGTAAGAGACTTCAGACAATGCAG  400

seq1  AGGTTTAAAGTCAGCCGTAGACTCTAACGACGTCTTTTCAGAGGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAAGTCAGCCGTAGACTCTAACGACGTCTTTTCAGAGGATTTTG  450

seq1  GGTTCTTCTAATATCCCTGCTCAGATACCTTTCTAGACTACTACAAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTCTAATATCCCTGCTCAGATACCTTTCTAGACTACTACAAGTAT  500

seq1  GCATACTCTTGCTTAAAGTCTTAACTTGTAAAAACAGGGTGTCTGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTCTTGCTTAAAGTCTTAACTTGTAAAAACAGGGTGTCTGGGGTG  550

seq1  GCTCTGTTACAATCTTATGGTACTCTTATTCTACAACCTGAGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTACAATCTTATGGTACTCTTATTCTACAACCTGAGAATTC  597

seq1: chr10_121317331_121318407
seq2: B6Ng01-321D02.g_67_1147

seq1  GAATTCACACAAATCCTTTGAACAAAAGAGATTGTCTGGGACTCTGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAAATCCTTTGAACAAAAGAGATTGTCTGGGACTCTGGACC  50

seq1  CTACTGGCTAGAGATAACCAGTCTCCCAAAGCACAGAGCAATGCAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTAGAGATAACCAGTCTCCCAAAGCACAGAGCAATGCAGAAAT  100

seq1  GCAGAAAATAACAAAATATGGGGAAAGACAGAGAGCCTGAATACTAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAATAACAAAATATGGGGAAAGACAGAGAGCCTGAATACTAAAGA  150

seq1  AGTTTTAGGGCTTATAAAAATTATGAAAGTAATTACATTCGGCTCAGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGGCTTATAAAAATTATGAAAGTAATTACATTCGGCTCAGCGT  200

seq1  AGCATTAAGGGCTTCATTTTAGGAGTAATTACACAGTGAACACTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAGGGCTTCATTTTAGGAGTAATTACACAGTGAACACTTTTAAT  250

seq1  GGGAAGAACCAGTCTATGGAACAGCAGTTTGGGGTCGGTACTGGCGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAACCAGTCTATGGAACAGCAGTTTGGGGTCGGTACTGGCGATAC  300

seq1  TAACAAAATCTGTCTTCACTTCAGCCTTCATGTCTCACACTGGGGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATCTGTCTTCACTTCAGCCTTCATGTCTCACACTGGGGTCTCA  350

seq1  TCTGGGAGGACAACATGAGGTCTTCCCACAGACCCAAAGTCACGGAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGACAACATGAGGTCTTCCCACAGACCCAAAGTCACGGAGCCA  400

seq1  GTCAAATCACACCACCTCAGAGCCGTTGCTAAAGAAAGACGAAATGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCACACCACCTCAGAGCCGTTGCTAAAGAAAGACGAAATGCAAA  450

seq1  GCAGAGGCAGAAACACGGAAGGGAGCTGATCTCAATCACTTCTGGGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGAAACACGGAAGGGAGCTGATCTCAATCACTTCTGGGTGCA  500

seq1  GAAAGCTCTGCCAGAAGGAAATGTAATAGAACTTCGGGCAACAATTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCTGCCAGAAGGAAATGTAATAGAACTTCGGGCAACAATTCTCA  550

seq1  ACCTTTGGGTCATGACCCCTTTGTGGGGGTTCAAATGACCCTTTTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGGTCATGACCCCTTTGTGGGGGTTCAAATGACCCTTTTCTAGG  600

seq1  GGTCGCATATCAGAAGATATCCTGCATGTCAGATATTTACATTATGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCATATCAGAAGATATCCTGCATGTCAGATATTTACATTATGACTC  650

seq1  ATAATAGTAACAGAATCGCAGTTACGAAGTAGCAAAGAAAATAATTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTAACAGAATCGCAGTTACGAAGTAGCAAAGAAAATAATTTTAT  700

seq1  GGCTGAGGGTCAGAACAACATGAGGAACTGTATTAAACGGGTTGTAGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGGTCAGAACAACATGAGGAACTGTATTAAACGGGTTGTAGCGT  750

seq1  CAGGAACATTGAGAACCTCTGTAAGGAGAATAAGGTAAGACATAACTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATTGAGAACCTCTGTAAGGAGAATAAGGTAAGACATAACTGGA  800

seq1  TGGGGTGGCGTTAACGAGGAGTTTAGCGTTTCTTTAACCTAAGTGTGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGCGTTAACGAGGAGTTTAGCGTTTCTTTAACCTAAGTGTGGCC  850

seq1  CCATCCCAAGAAGCTCATCACTGTTAATAAAATATCCTAAATCCAAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAAGAAGCTCATCACTGTTAATAAAATATCCTAAATCCAAGTGT  900

seq1  ACTTAATAAACCTGACCTATTGATACCATAATGTATATCAGGCTA-CCTT  949
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTAAT-AACCTGACCTATTGATACCATAATGTATATCAGGCTACCCTT  949

seq1  AAAT-GTGGT-GAGCACA-TTGGTCTAG-CCTTAGGTAAAATCACCTAAT  995
      |||| ||||| ||||||| ||||||||| |||||||| ||||||||||||
seq2  AAATGGTGGTGGAGCACATTTGGTCTAGCCCTTAGGT-AAATCACCTAAT  998

seq1  ACAA-GCTCATTTAATAATTTAGGGTTGGGGGCACAGAGA-GAT-GGATG  1042
      |||| |||||||||   |||||||| |||||||||||||| ||| |||||
seq2  ACAAGGCTCATTTA--TATTTAGGG-TGGGGGCACAGAGAGGATGGGATG  1045

seq1  CTTTGAAGCCATGG-CAGGATGAGGAAACTAAGTAA  1077
      |||||| ||||||| |||||||||||||||||||||
seq2  CTTTGAGGCCATGGCCAGGATGAGGAAACTAAGTAA  1081