BAC Information

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BAC

Clone NameB6Ng01-322H17
Chromosome10 (Build37)
Map Location 18,150,012 - 18,151,084
singlet/doubletsinglet
Overlap geneNhsl1
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
Downstream geneHebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H17.bB6Ng01-322H17.g
ACCGA111312GA111313
length1,067743
definitionB6Ng01-322H17.b B6Ng01-322H17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacttggttatgctgagtcaggtgctggaagcaaaggagcatag
aacatctataccgtgcagcgagggctgcaactggcacccagtacacaggc
agacggacagattgggtttgtgagtcagtttcctgcatcctgcggtgtcc
agaggaagactcgccagcagcagctgggctgtgaacaatagtcacttcct
gaagtcagtgtatgtggggaaggaccccaagggccatgcagggttcaggt
ggaactctgagtcccctggggtcagcttctatagacaatttcttttcttt
tagaacctatgatggagactttgacagggcgactttacctttccattgta
agtgaagagattaaatgactgagttgtgccacaatggttagaaactctca
ctaatactgacttcattttgtcatctgaaaaagcggtaatgtcatagaag
tgtgacatagttcacatttctgtgctaatgcatttattcatagcatttgt
aggctaataatgatagtgagcctgtacctgggatttgctatgtggtgtgt
gaatgtttcatacatattcactgatttgtgtgtgttcaagtacgtggaga
gtttggtatcctcatgtttcatgctaattacaagctagtgtatgattgtt
ccacatcagagaggagagcatgtgaccaaaaaggaacagggaagacaaag
ttattggtaatcggcagcaaacagttaacctgcagccagtgacttctgtt
gttctcatagtcacatctgctgcaatggaaaacaccgagagagacgcaca
gacacgcgggctttctgcgtcccggggctgcaccgggcaggatgaacgga
gactgccgaccctgggcctccccctccttctagaggatcctgggctggtt
cccggtgtgaagtaacggacagatagggaggtgtcagcagccgggccaaa
aagcaggattgggtagtggcttctgtagtaacaggcgctggctggctgcc
tcgagcgagcagcgagctctctggcgtgctgctgagagtgggtgggagac
aggctgtgcctatcact
gaattcttaacagaggaatctcgaatggctgagaaacacttaaggaaatg
ttcaaagtccttagttttcagggaaatataaatcaaaacaacttggaggt
tccatcttacaccagtcagaatggctaagttcaaaaactcaagtgatagc
acatgctagcgaggatgtggaacaaggggaacactccttcattgatggtg
ggtttgcaaacttgtacaaccactctggaaatcaatttggtggtttctca
gaaaactgggaatagttctatctcaagacccagctatgctactcctgggc
atatacccaaaagatgttccaacatcccacaaagacacttgcttaactgt
gttcatagcagccttattcataatagccagaaactggaaacaacctagat
gtccctcaactgaagaatgaataaataaaatgtggtacatatacacaatg
gaatactattcagctactaaaaatcaagacatcgtgaattttgcaggcaa
atagaacttgaaaatatcatgctgagtgaggtaactcagttcccaaatga
catgcatgatatgtactcacttataagtggatattagcgatagaatatag
gcactatgttatatgccacagacccgaagaagctaaacaaaaaggaaggc
acaatcgaagaagcttgactctcacttagaaggggaataaaataatcata
agaagcaggtggggggagggacttgggagcaggggatggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18150012_18151084
seq2: B6Ng01-322H17.b_48_1114

seq1  GAATTCAACTTGGTTATGCTGAGTCAGGTGCTGGAAGCAAAGGAGCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGGTTATGCTGAGTCAGGTGCTGGAAGCAAAGGAGCATAG  50

seq1  AACATCTATACCGTGCAGCGAGGGCTGCAACTGGCACCCAGTACACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTATACCGTGCAGCGAGGGCTGCAACTGGCACCCAGTACACAGGC  100

seq1  AGACGGACAGATTGGGTTTGTGAGTCAGTTTCCTGCATCCTGCGGTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGACAGATTGGGTTTGTGAGTCAGTTTCCTGCATCCTGCGGTGTCC  150

seq1  AGAGGAAGACTCGCCAGCAGCAGCTGGGCTGTGAACAATAGTCACTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGACTCGCCAGCAGCAGCTGGGCTGTGAACAATAGTCACTTCCT  200

seq1  GAAGTCAGTGTATGTGGGGAAGGACCCCAAGGGCCATGCAGGGTTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGTGTATGTGGGGAAGGACCCCAAGGGCCATGCAGGGTTCAGGT  250

seq1  GGAACTCTGAGTCCCCTGGGGTCAGCTTCTATAGACAATTTCTTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGAGTCCCCTGGGGTCAGCTTCTATAGACAATTTCTTTTCTTT  300

seq1  TAGAACCTATGATGGAGACTTTGACAGGGCGACTTTACCTTTCCATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTATGATGGAGACTTTGACAGGGCGACTTTACCTTTCCATTGTA  350

seq1  AGTGAAGAGATTAAATGACTGAGTTGTGCCACAATGGTTAGAAACTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGATTAAATGACTGAGTTGTGCCACAATGGTTAGAAACTCTCA  400

seq1  CTAATACTGACTTCATTTTGTCATCTGAAAAAGCGGTAATGTCATAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTGACTTCATTTTGTCATCTGAAAAAGCGGTAATGTCATAGAAG  450

seq1  TGTGACATAGTTCACATTTCTGTGCTAATGCATTTATTCATAGCATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATAGTTCACATTTCTGTGCTAATGCATTTATTCATAGCATTTGT  500

seq1  AGGCTAATAATGATAGTGAGCCTGTACCTGGGATTTGCTATGTGGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATAATGATAGTGAGCCTGTACCTGGGATTTGCTATGTGGTGTGT  550

seq1  GAATGTTTCATACATATTCACTGATTTGTGTGTGTTCAAGTACGTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCATACATATTCACTGATTTGTGTGTGTTCAAGTACGTGGAGA  600

seq1  GTTTGGTATCCTCATGTTTCATGCTAATTACAAGCTAGTGTATGATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTATCCTCATGTTTCATGCTAATTACAAGCTAGTGTATGATTGTT  650

seq1  CCACATCAGAGAGGAGAGCATGTGACCAAAAAGGAACAGGGAAGACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAGAGAGGAGAGCATGTGACCAAAAAGGAACAGGGAAGACAAAG  700

seq1  TTATTGGTAATCGGCAGCAAACAGTTAACCTGCAGCCAGTGACTTCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTAATCGGCAGCAAACAGTTAACCTGCAGCCAGTGACTTCTGTT  750

seq1  GTTCTCATAGTCACATCTGCTGCAATGGAAAACACCGAGAGAGACGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATAGTCACATCTGCTGCAATGGAAAACACCGAGAGAGACGCACA  800

seq1  GACACGCGGGCTTTCTGCGTCCCGGGGCTGCACCGGGCAGGATGAACGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCGGGCTTTCTGCGTCCCGGGGCTGCACCGGGCAGGATGAACGGA  850

seq1  GACTGCCGACCCTGGGCCTCCCCCTCCTTCTAGAGGATCCTGGGCTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCGACCCTGGGCCTCCCCCTCCTTCTAGAGGATCCTGGGCTGGTT  900

seq1  CCCGGTGTGAAGTAACGGACAGATAGGGAGGTGTCAGCAGCCGGGCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGTGAAGTAACGGACAGATAGGGAGGTGTCAGCAGCCGGGCCAAA  950

seq1  AAGCAGGGATTGGGTAGTGGCTTCCTGTAGTAACAGGCGCTGGCTGGCTG  1000
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCA-GGATTGGGTAGTGGCTT-CTGTAGTAACAGGCGCTGGCTGGCTG  998

seq1  CCCCGAGCGAGCAAGCGAGCTCTCTGGCGGTGGCTGCTGAGGAGGTGGGT  1050
      || ||||||||| ||||||||||||||||   |||||||||   ||||||
seq2  CCTCGAGCGAGC-AGCGAGCTCTCTGGCG--TGCTGCTGAG--AGTGGGT  1043

seq1  GGGAGACA-GCTGTGCCTAGCACT  1073
      |||||||| |||||||||| ||||
seq2  GGGAGACAGGCTGTGCCTATCACT  1067