BAC Information

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BAC

Clone NameB6Ng01-326J16
Chromosome10 (Build37)
Map Location 115,572,349 - 115,705,924
singlet/doubletdoublet
Overlap genePtprr
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, 4933416C03Rik
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326J16.bB6Ng01-326J16.g
ACCGA114372GA114373
length1,1401,147
definitionB6Ng01-326J16.b B6Ng01-326J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,704,785 - 115,705,924)(115,572,349 - 115,573,522)
sequence
gaattctccttaggtacaaactcaaggtttatgaagtaccataggttaag
ttataatttgtgtctactattaagtaggtataaatacaagaaaaatcaag
tcatctaaggcccacaggtagggagagggggaggatcaaggccagcaata
acacagatgactatctcaaaagacaagaagaaaagtaaacggaaaacggt
aagaacttcttacttctgccagtggttgtgtgtttgaaaaggtctggaaa
gccacgtgtgtcaagttcattacccatggggaccaaagtatgttaagagg
ccaagacaaagcaagagcaaactcagcacacactgtggtcaagataaatc
ctgtctccatgacttactatcttattacatcatctttttgagctcagtct
tttcatatgcaaaaccacagaggctacacaacagttggacctacccgact
tagccctgctgtgaggagcaagagagataatccatttaaaatgcttaggg
taaagctaagataagtgcctgtgaataccaccttatgaatagtatccttg
aagaataagcacaagcttggccaagaacaagttggtccaggttggtcaag
tctggatggaaatgatacagatatatgtctacataaagagacagagctat
agaggaggcacctggtacaacaggaagcagtaggcttggagcctggcaga
tttcaggcataagttcttccttttagacctactagcttcgtgactcaatc
aattgatgtttctattgttgtcattttgagacagagtcttgttaaatagc
ccaggcttggcttgaactcctgcaatcctcctgcctcaacctcccaagta
ctgagatcacaggaaagctctgacttatctcctcccccacaacctggctt
ttctcacttatgaagtaatatgaatgacagatgtcatctcattatgagca
ttaatgtgtctgagtacctggtttgtctagctgcaggacagtcacagaaa
ccccaggagtccctagctcctagtgttatcagggaggagtaggagccagg
aatcagagacctgtcagtatgtaacttgtcactatgtgactgctgtgctg
ggtggcttttctcatatcggtgaccgggtggaagaatttt
gaattcctcataggattcataaactagaacaacttctaaaggtttcagga
gttacaacagatacaggaataagaaagaggaagtgaatctgttatcatcc
acacccacacaattagattggattagattagattagattagattagccta
gcctagactagacattgagggaaagtgtctagaagaggcatatcacatct
ttcgaaggtgagaaagtgccttctttagactgattagagcaacttatctg
aggatggatatttaacacgaagttggagaaaagcaggctcatgcagtgcc
atgaaagtaaagagaacaaagttttcaggaggaagaggaatcctcatcct
atgtgtcaaactgcttctgagaaagacagggacacgcagctgtctactgg
tgtggctctatggagacccctggtgatattaagagggcatatgaccctgc
agaggccattagtgctcttaacagggttggttccttcccattctcggggc
actgtcagatgagagaggaatgaaatgcagataatcataaggtacaggct
atggccagtttgcatgacaatattttgtgtaaatggctcccaggaacaaa
agcgttttttttttctctctctcaacaaaggaaagaattaacagctaagt
ggagaagcagaccgtatggctttattttcaagaaaacttgcaaatgttta
tgtactgccgggaacaatccatcagtgatggagaaaacagtgatacagaa
aacaagcaaaagagaattcttgagaacagaacatagaataggaacctaac
tgaggggattggcccttgatgagaaaaagaaaaatgtctcctgtgggcct
gagaggccttgacaaccacgaaatctcagaacccagtgcctggcacacat
tggaaactcatgaaatatttgctgagtgaatctagtagacatctcttcta
aatcacagacatacgaccagacacagattgggcagagaaatttaggacgt
ggtgtattatcatgtcccacgctgatgtgcttatttgtagtgtgtctatg
atcgacacaacctgactatttttgccacaactatgtttcttattggcagc
taggctatgtgatctaggtaagtggcttagctcatttataatctacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115704785_115705924
seq2: B6Ng01-326J16.b_46_1185 (reverse)

seq1  AAAAATCTTCCA-CCGGTCACGG--ATGAGAAAAGCCACCCAGCAC-GCA  46
      |||| ||||||| |||||||| |  ||||||||||||||||||||| |||
seq2  AAAATTCTTCCACCCGGTCACCGATATGAGAAAAGCCACCCAGCACAGCA  50

seq1  GTCACATTAGTGACAGGTTACAATACTGACAGGTTCTCTTGATCCCTGGC  96
      |||||| |||||||| ||||| ||||||||||| |||| |||| ||||||
seq2  GTCACA-TAGTGACAAGTTAC-ATACTGACAGG-TCTC-TGATTCCTGGC  96

seq1  TCCTCCTCCTCCCTGATAACACTGGGAGCTAGGGACTCCTGGGGTTTCTG  146
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTACTCCTCCCTGATAACACTAGGAGCTAGGGACTCCTGGGGTTTCTG  146

seq1  TGACTGTCCTGCAGCTAGAC-AACCAGGTACTCAGACACATTTAATGCTC  195
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TGACTGTCCTGCAGCTAGACAAACCAGGTACTCAGACACA-TTAATGCTC  195

seq1  ATAATGAGATGACATCTGTCATTCATATTACTTCATAAGTGAGAAAAGCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGATGACATCTGTCATTCATATTACTTCATAAGTGAGAAAAGCC  245

seq1  AGGTTGTGGGGGAGGAGATAAGTCAGAGCTTTCCTGTGATCTCAGTACTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGGGGAGGAGATAAGTCAGAGCTTTCCTGTGATCTCAGTACTT  295

seq1  GGGAGGTTGAGGCAGGAGGATTGCAGGAGTTCAAGCCAAGCCTGGGCTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTGAGGCAGGAGGATTGCAGGAGTTCAAGCCAAGCCTGGGCTAT  345

seq1  TTAACAAGACTCTGTCTCAAAATGACAACAATAGAAACATCAATTGATTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGACTCTGTCTCAAAATGACAACAATAGAAACATCAATTGATTG  395

seq1  AGTCACGAAGCTAGTAGGTCTAAAAGGAAGAACTTATGCCTGAAATCTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGAAGCTAGTAGGTCTAAAAGGAAGAACTTATGCCTGAAATCTGC  445

seq1  CAGGCTCCAAGCCTACTGCTTCCTGTTGTACCAGGTGCCTCCTCTATAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCAAGCCTACTGCTTCCTGTTGTACCAGGTGCCTCCTCTATAGC  495

seq1  TCTGTCTCTTTATGTAGACATATATCTGTATCATTTCCATCCAGACTTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTTATGTAGACATATATCTGTATCATTTCCATCCAGACTTGA  545

seq1  CCAACCTGGACCAACTTGTTCTTGGCCAAGCTTGTGCTTATTCTTCAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGGACCAACTTGTTCTTGGCCAAGCTTGTGCTTATTCTTCAAGG  595

seq1  ATACTATTCATAAGGTGGTATTCACAGGCACTTATCTTAGCTTTACCCTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTCATAAGGTGGTATTCACAGGCACTTATCTTAGCTTTACCCTA  645

seq1  AGCATTTTAAATGGATTATCTCTCTTGCTCCTCACAGCAGGGCTAAGTCG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTAAATGGATTATCTCTCTTGCTCCTCACAGCAGGGCTAAGTCG  695

seq1  GGTAGGTCCAACTGTTGTGTAGCCTCTGTGGTTTTGCATATGAAAAGACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTCCAACTGTTGTGTAGCCTCTGTGGTTTTGCATATGAAAAGACT  745

seq1  GAGCTCAAAAAGATGATGTAATAAGATAGTAAGTCATGGAGACAGGATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAAAAGATGATGTAATAAGATAGTAAGTCATGGAGACAGGATTT  795

seq1  ATCTTGACCACAGTGTGTGCTGAGTTTGCTCTTGCTTTGTCTTGGCCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACCACAGTGTGTGCTGAGTTTGCTCTTGCTTTGTCTTGGCCTCT  845

seq1  TAACATACTTTGGTCCCCATGGGTAATGAACTTGACACACGTGGCTTTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACTTTGGTCCCCATGGGTAATGAACTTGACACACGTGGCTTTCC  895

seq1  AGACCTTTTCAAACACACAACCACTGGCAGAAGTAAGAAGTTCTTACCGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTTCAAACACACAACCACTGGCAGAAGTAAGAAGTTCTTACCGT  945

seq1  TTTCCGTTTACTTTTCTTCTTGTCTTTTGAGATAGTCATCTGTGTTATTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTTTACTTTTCTTCTTGTCTTTTGAGATAGTCATCTGTGTTATTG  995

seq1  CTGGCCTTGATCCTCCCCCTCTCCCTACCTGTGGGCCTTAGATGACTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGATCCTCCCCCTCTCCCTACCTGTGGGCCTTAGATGACTTGA  1045

seq1  TTTTTCTTGTATTTATACCTACTTAATAGTAGACACAAATTATAACTTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTATTTATACCTACTTAATAGTAGACACAAATTATAACTTAA  1095

seq1  CCTATGGTACTTCATAAACCTTGAGTTTGTACCTAAGGAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTACTTCATAAACCTTGAGTTTGTACCTAAGGAGAATTC  1140

seq1: chr10_115572349_115573522
seq2: B6Ng01-326J16.g_64_1209

seq1  GAATTCCTCATAGGATTCATAAACTAGAACAACTTCTAAAGGTTTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATAGGATTCATAAACTAGAACAACTTCTAAAGGTTTCAGGA  50

seq1  GTTACAACAGATACAGGAATAAGAAAGAGGAAGTGAATCTGTTATCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACAGATACAGGAATAAGAAAGAGGAAGTGAATCTGTTATCATCC  100

seq1  ACACCCACACAATTAGATTGGATTAGATTAGATTAGATTAGATTAGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACACAATTAGATTGGATTAGATTAGATTAGATTAGATTAGCCTA  150

seq1  GCCTAGACTAGACATTGAGGGAAAGTGTCTAGAAGAGGCATATCACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGACTAGACATTGAGGGAAAGTGTCTAGAAGAGGCATATCACATCT  200

seq1  TTCGAAGGTGAGAAAGTGCCTTCTTTAGACTGATTAGAGCAACTTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGGTGAGAAAGTGCCTTCTTTAGACTGATTAGAGCAACTTATCTG  250

seq1  AGGATGGATATTTAACACGAAGTTGGAGAAAAGCAGGCTCATGCAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGATATTTAACACGAAGTTGGAGAAAAGCAGGCTCATGCAGTGCC  300

seq1  ATGAAAGTAAAGAGAACAAAGTTTTCAGGAGGAAGAGGAATCCTCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTAAAGAGAACAAAGTTTTCAGGAGGAAGAGGAATCCTCATCCT  350

seq1  ATGTGTCAAACTGCTTCTGAGAAAGACAGGGACACGCAGCTGTCTACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAAACTGCTTCTGAGAAAGACAGGGACACGCAGCTGTCTACTGG  400

seq1  TGTGGCTCTATGGAGACCCCTGGTGATATTAAGAGGGCATATGACCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTATGGAGACCCCTGGTGATATTAAGAGGGCATATGACCCTGC  450

seq1  AGAGGCCATTAGTGCTCTTAACAGGGTTGGTTCCTTCCCATTCTCGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATTAGTGCTCTTAACAGGGTTGGTTCCTTCCCATTCTCGGGGC  500

seq1  ACTGTCAGATGAGAGAGGAATGAAATGCAGATAATCATAAGGTACAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGATGAGAGAGGAATGAAATGCAGATAATCATAAGGTACAGGCT  550

seq1  ATGGCCAGTTTGCATGACAATATTTTGTGTAAATGGCTCCCAGGAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGTTTGCATGACAATATTTTGTGTAAATGGCTCCCAGGAACAAA  600

seq1  AGCGTTTTTTTTTTCTCTCTCTCAACAAAGGAAAGAATTAACAGCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTTTTTTTCTCTCTCTCAACAAAGGAAAGAATTAACAGCTAAGT  650

seq1  GGAGAAGCAGACCGTATGGCTTTATTTTCAAGAAAACTTGCAAATGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCAGACCGTATGGCTTTATTTTCAAGAAAACTTGCAAATGTTTA  700

seq1  TGTACTGCCGGGAACAATCCATCAGTGATGGAGAAAACAGTGATACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCCGGGAACAATCCATCAGTGATGGAGAAAACAGTGATACAGAA  750

seq1  AACAAGCAAAAGAGAATTCTTGAGAACAGAACATAGAATAGGAACCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAAAAGAGAATTCTTGAGAACAGAACATAGAATAGGAACCTAAC  800

seq1  TGAGGGGATTGGCCCTTGATGAGAAAAAGAAAAATGTCTCCTGTGGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGATTGGCCCTTGATGAGAAAAAGAAAAATGTCTCCTGTGGGCCT  850

seq1  GAGAGGCCTTGACAACCACGAAATCTCAGAACCCAGTGCCTGGCACACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCTTGACAACCACGAAATCTCAGAACCCAGTGCCTGGCACACAT  900

seq1  TGGAAACTCATGAAATATTTGCTGAGTGAATCTAGTAGACATCTCTTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTCATGAAATATTTGCTGAGTGAATCTAGTAGACATCTCTTCTA  950

seq1  AATCAACAAGACAATACGAACCAGACACAGAATGGGCAAGAGAAA-TTAG  999
      |||||   |||| ||||| |||||||||||| ||||| ||||||| ||||
seq2  AATCA--CAGAC-ATACG-ACCAGACACAGATTGGGC-AGAGAAATTTAG  995

seq1  GACGTGGTGTAATTTATCCATGTCCCACGCTTGGTTGTTGCTTGGTTTGT  1049
      |||||||||||  |||| |||||||||||||  | || |||||  |||||
seq2  GACGTGGTGTA--TTAT-CATGTCCCACGCT--GATG-TGCTT-ATTTGT  1038

seq1  AGTGTGTTCTTTATGATCCAAACCACAAACCCTGACTATTTTTTCCACAA  1099
      ||||||   | ||||||| |   |||||  ||||||||||||| |||| |
seq2  AGTGTG---TCTATGATCGA---CACAA--CCTGACTATTTTTGCCAC-A  1079

seq1  ACTATGGTTTCTAATTTGGCAGCATAAGCTATGTGGAATCTAGTTAAGTT  1149
      ||||| |||||| | |||||||| || ||||||||  |||||| ||||| 
seq2  ACTAT-GTTTCTTA-TTGGCAGC-TAGGCTATGTG--ATCTAGGTAAGTG  1124

seq1  GGTTTTAGGCTCATTTAATATCTAC  1174
      | ||    |||||||||  ||||||
seq2  GCTT---AGCTCATTTATAATCTAC  1146