BAC Information

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BAC

Clone NameB6Ng01-329E21
Chromosome2 (Build37)10 (Build37)
Map Location 45,814,115 - 45,814,27150,454,972 - 50,456,088
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZeb2, LOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329E21.bB6Ng01-329E21.g
ACCGA116303GA116304
length7391,104
definitionB6Ng01-329E21.b B6Ng01-329E21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,814,115 - 45,814,271)(50,454,972 - 50,456,088)
sequence
gaattctttttttttttttaaatcaactatgcatccaaaatatataacca
actcaaaatttagatatcaagaaaagaaataaccccattataaaatgggg
cacagatctaaaaagaaaattctcaatagaggaaactcaaatgactgagc
aatagttacagatatatccaacatccttagcaagcagtgaaatgcaaatc
agaactcttttgagatttcatcttacaactgtgagaatggctataaaaca
agtgacagctcatgctggctcatccattgctggtgggaatgcaagattat
acagttactatagcaacaatgggaggtccttaggaagaacgaaatagatc
tacctcaaaatccagttaccattcttgggcatatcctctaaggatgcttc
atcttaccatagagaaattattcaatccttgttcattatggttctattcc
taagagtcagaaactggaaacaacttagatgccccttaacagaagaatgg
ataaagacaatgtagtacatttatacaatggagtattacttagccactaa
aaataaagtcatgaaatccataggtaaatggatggaactagaaaaaaatt
agtgaggttaagttaatgataactaagatataatatgcagaatagtctaa
gggactaggggagacagatctcattagggaagggaaatagaacagaaaat
tatagctgtatgcggagggggctggaatgggtagaggga

gaattcatatgaactacattggtttttgtgtatacttcccacagcaatta
gaagtcactctccagccaagcctgttttgatatttgtctcatcaagacgt
caaacacgacttacagccttagagttgatagcatttctggccactgaaga
agacccaaagcagtggttgaatatggatgagcaagaggtaagtgagatgc
tttttcaagttcttactgtactgtaatggggattatatatttaattgtat
atagttttactttataatcaaaatacgagggaacaaggagtccattgtgc
tactgtcatacaacatttgcatgcatttctttaatattcccagtaaaata
tttacttcacatatctatacgtagatgattccttttatttaacatcatga
ttaatatttttatatttaattattttttcatatgttttttagtatttcct
gtccttatgcaacttccaattcattttgctagataaatttaagagaaaca
acatgatcattgtttaaaactttgtacatactaatcgatatagtaaactt
taaaaatacatatttttgaataaaattttgtccctagtcagttttatttt
tctatgtagctgttacatatttttttatttatatagttaaataatcaagt
ttccttattgtaatttacgtctttaggattatttttctcagagaacataa
ttagtgctttttttatagtaccacttattttccaaaacaactctactgat
taaagcgtatgaagtggtgtggaagagtgaaggaggcacctgcatttctc
gtgactcattaacattatgaggaatgttctcctgatattttaatctacac
cttgattttgtgtggatgaacatggttttatacatttgttcccttttctt
ccctgtcccttcattttctatggttttatctttttcagtacatttcttag
agatttgtagagagccttacagtcatttagaaatatctatataagccagg
catgtggtgcacttcttatccagactcagaagcagagcaagtggatgtct
gagttgagccagcctgtctacgagtggagtttcagacatcgagccttaca
gaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45814115_45814271
seq2: B6Ng01-329E21.b_213_338 (reverse)

seq1  CTTGCAATCCCACCAGCAATGGAGCAGTGTTCCTCTTTCTCCACATCCTC  50
      |||||| ||||||||||||||||  ||                       
seq2  CTTGCATTCCCACCAGCAATGGATGAG-----------------------  27

seq1  ACCAGCATCAGCTGTCACCTGAGTTTTTGTTCTTAGTCATTCTGACTGGG  100
       ||||||| ||||||||| ||   ||||     ||| |||||| || |  
seq2  -CCAGCATGAGCTGTCACTTG---TTTT----ATAGCCATTCTCACAGTT  69

seq1  GTGGGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCACTGATGGCTAA  150
      ||  | || |||||||     ||| ||||||||||||||||| | |||||
seq2  GTAAGATGAAATCTCAAAAGAGTTCTGATTTGCATTTCACTGCTTGCTAA  119

seq1  GGATGTT  157
      |||||||
seq2  GGATGTT  126


seq1: chr10_50454972_50456088
seq2: B6Ng01-329E21.g_64_1167

seq1  GAATTCATATGAACTACATTGGTTTTTGTGTATACTTCCCACAGCAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGAACTACATTGGTTTTTGTGTATACTTCCCACAGCAATTA  50

seq1  GAAGTCACTCTCCAGCCAAGCCTGTTTTGATATTTGTCTCATCAAGACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACTCTCCAGCCAAGCCTGTTTTGATATTTGTCTCATCAAGACGT  100

seq1  CAAACACGACTTACAGCCTTAGAGTTGATAGCATTTCTGGCCACTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACGACTTACAGCCTTAGAGTTGATAGCATTTCTGGCCACTGAAGA  150

seq1  AGACCCAAAGCAGTGGTTGAATATGGATGAGCAAGAGGTAAGTGAGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAAGCAGTGGTTGAATATGGATGAGCAAGAGGTAAGTGAGATGC  200

seq1  TTTTTCAAGTTCTTACTGTACTGTAATGGGGATTATATATTTAATTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGTTCTTACTGTACTGTAATGGGGATTATATATTTAATTGTAT  250

seq1  ATAGTTTTACTTTATAATCAAAATACGAGGGAACAAGGAGTCCATTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTACTTTATAATCAAAATACGAGGGAACAAGGAGTCCATTGTGC  300

seq1  TACTGTCATACAACATTTGCATGCATTTCTTTAATATTCCCAGTAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCATACAACATTTGCATGCATTTCTTTAATATTCCCAGTAAAATA  350

seq1  TTTACTTCACATATCTATACGTAGATGATTCCTTTTATTTAACATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCACATATCTATACGTAGATGATTCCTTTTATTTAACATCATGA  400

seq1  TTAATATTTTTATATTTAATTATTTTTTCATATGTTTTTTAGTATTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTTTATATTTAATTATTTTTTCATATGTTTTTTAGTATTTCCT  450

seq1  GTCCTTATGCAACTTCCAATTCATTTTGCTAGATAAATTTAAGAGAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATGCAACTTCCAATTCATTTTGCTAGATAAATTTAAGAGAAACA  500

seq1  ACATGATCATTGTTTAAAACTTTGTACATACTAATCGATATAGTAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCATTGTTTAAAACTTTGTACATACTAATCGATATAGTAAACTT  550

seq1  TAAAAATACATATTTTTGAATAAAATTTTGTCCCTAGTCAGTTTTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACATATTTTTGAATAAAATTTTGTCCCTAGTCAGTTTTATTTT  600

seq1  TCTATGTAGCTGTTACATATTTTTTTATTTATATAGTTAAATAATCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAGCTGTTACATATTTTTTTATTTATATAGTTAAATAATCAAGT  650

seq1  TTCCTTATTGTAATTTACGTCTTTAGGATTATTTTTCTCAGAGAACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTGTAATTTACGTCTTTAGGATTATTTTTCTCAGAGAACATAA  700

seq1  TTAGTGCTTTTTTTATAGTACCACTTATTTTCCAAAACAACTCTACTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTTTTTTTATAGTACCACTTATTTTCCAAAACAACTCTACTGAT  750

seq1  TAAAGCGTATGAAGTGGTGTGGAAGAGTGAAGGAGGCACCTGCATTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGTATGAAGTGGTGTGGAAGAGTGAAGGAGGCACCTGCATTTCTC  800

seq1  GTGACTCATTAACATTATGAGGAATGTTCTCCTGATATTTTAATCTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCATTAACATTATGAGGAATGTTCTCCTGATATTTTAATCTACAC  850

seq1  CTTGATTTTGTGTGGATGAACATGGTTTTATACATTTGTT-CCTTTTCTT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGATTTTGTGTGGATGAACATGGTTTTATACATTTGTTCCCTTTTCTT  900

seq1  CCCTGTCCCTTCATTTTCTATGGTTTTATCTTTTTCAGTACATTTCTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCCTTCATTTTCTATGGTTTTATCTTTTTCAGTACATTTCTTAG  950

seq1  AGATTTGTAGAGAGCCTTACAGTCATTTAGAAATATCTATATAAAGCCAG  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATTTGTAGAGAGCCTTACAGTCATTTAGAAATATCTATAT-AAGCCAG  999

seq1  GCATGGTGGTGCACTCCTTTAATCCCAGGACTCAGGAGGCAGAGGCAGGT  1049
      |||| |||||||||| |||  ||||   |||||| || ||||| ||| ||
seq2  GCAT-GTGGTGCACTTCTT--ATCC--AGACTCA-GAAGCAGA-GCAAGT  1042

seq1  GGATGTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT-GAGTTCCAGGAC  1098
      ||||||||||| |||| |||||||| |||||| |||| ||||| || |||
seq2  GGATGTCTGAG-TTGA-GCCAGCCT-GTCTAC-GAGTGGAGTTTCA-GAC  1087

seq1  ATCCAGAGCTATACAGAGA  1117
      |||  ||||  ||||||||
seq2  ATC--GAGCCTTACAGAGA  1104


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