BAC Information

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BAC

Clone NameB6Ng01-331L16
Chromosome10 (Build37)
Map Location 5,642,779 - 5,821,254
singlet/doubletdoublet
Overlap geneEsr1, LOC100041310, Gm221
Upstream geneVip, Myct1, Syne1
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331L16.bB6Ng01-331L16.g
ACCGA118020GA118021
length1,134656
definitionB6Ng01-331L16.b B6Ng01-331L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,642,779 - 5,643,915)(5,820,601 - 5,821,254)
sequence
gaattcagtgcctgaacactcctcacccctcgcacccttgccttgaatca
ccacaacagctcccacaagttacatttcatctgtgccttgaggacctcag
agaagaaagtcacccaagatctccatcttagagaaagctctcttaccagg
tggaacatttttacccacgtgttcactcactctatgaacatttttgagca
cctgctgtatagtcatcatttaacactcaacttcctcacagacccgtttt
tcctctccatttcctgtcttggcaaatggtacttcatatacatcactgca
cacatccaaagaactcagtactctgtgccctggctctcttcctcagtctt
gaactggctctatcacaagcttttatttctcgttgctcaatctcttttga
gtcctccttctgttctcacactcgctatgatttccaggccactatcatcc
cttggaggtcactacctccattcctttgcttgaattccccatcccctgca
ctgaagaacagtctgtctaccagcaaaagaacttgaactgcattccttga
ttctcagaaatcatccccccatctcccctctcccatgagccttgttttcc
tccaggcagacaacctccatcgtgtgcaaatacttactcctgactttttc
taaacatgagcattcccatatgtaggtggctttacgtggaatctttccac
cttcctttgccatctgtctcccatgtagtcttccttgagacagtacagcc
accaggaagactgccttgatttctgcttggatgctttttacaactgccca
catctccctgatctttgtctgtccctgctgcttttggagaacaccataga
ctgtgtaataaaataagaattaattcagttgtgattctgggagggtagca
ctccatgatggacaggcttcatctgggtaggaccatgatgaaaaagcttg
tgtgtgagacagagtatcaagctaacctgctctttttctggaactggctt
caaggagaatgggccttggtcacctcttgaagtctgtacctcttagatag
ctacaatggcttaataattccaattaagtttggagatgttactcaaacat
agtactcaatcaccactcctactcagccctgtga

gaattcaagaggcagagtcaggaggatctctgaattacagttcggcctgg
tctacacagtgaaatccagaccagccaggctccactgtaagaccctctct
cagagaaaaatccaggtgttttattacatgtggtaaatttatttggaact
ctttagcagttgttttgcttgggtactgggaactgaagtgaagttcttct
caggggtgctctgggcatggtctggccactcagcccctgtggtactgggc
agggtgaagtgaaggtcttaggcctgataagcacatgtacagctagagca
caaatattacagtgctttttttttttttttagtattttatttattgattt
tttatatatggtgagtacactgtagctgtctttagacacaccagaagagg
gcattggatcctgttacagatggttgtgagccaccatgtggttgctggga
attgaactcaggacctctggaagagcagtcagtgctctttttttttcttt
gttttaaagatttatttatttatttaaagatttatttaatatcacacata
cgtacactgtagctgtctttgaatacaccagaagagggcaccagatctca
ttatgggtttgttgtgagccaccacgtggttgctgggatttgaaactcat
gacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5642779_5643915
seq2: B6Ng01-331L16.b_49_1182

seq1  GAATTCAGTGCCTGAACACTCCTCACCCCTCGCACCCTTGCCTTGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCTGAACACTCCTCACCCCTCGCACCCTTGCCTTGAATCA  50

seq1  CCACAACAGCTCCCACAAGTTACATTTCATCTGTGCCTTGAGGACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAGCTCCCACAAGTTACATTTCATCTGTGCCTTGAGGACCTCAG  100

seq1  AGAAGAAAGTCACCCAAGATCTCCATCTTAGAGAAAGCTCTCTTACCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGTCACCCAAGATCTCCATCTTAGAGAAAGCTCTCTTACCAGG  150

seq1  TGGAACATTTTTACCCACGTGTTCACTCACTCTATGAACATTTTTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATTTTTACCCACGTGTTCACTCACTCTATGAACATTTTTGAGCA  200

seq1  CCTGCTGTATAGTCATCATTTAACACTCAACTTCCTCACAGACCCGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTATAGTCATCATTTAACACTCAACTTCCTCACAGACCCGTTTT  250

seq1  TCCTCTCCATTTCCTGTCTTGGCAAATGGTACTTCATATACATCACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCATTTCCTGTCTTGGCAAATGGTACTTCATATACATCACTGCA  300

seq1  CACATCCAAAGAACTCAGTACTCTGTGCCCTGGCTCTCTTCCTCAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCAAAGAACTCAGTACTCTGTGCCCTGGCTCTCTTCCTCAGTCTT  350

seq1  GAACTGGCTCTATCACAAGCTTTTATTTCTCGTTGCTCAATCTCTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTCTATCACAAGCTTTTATTTCTCGTTGCTCAATCTCTTTTGA  400

seq1  GTCCTCCTTCTGTTCTCACACTCGCTATGATTTCCAGGCCACTATCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTTCTGTTCTCACACTCGCTATGATTTCCAGGCCACTATCATCC  450

seq1  CTTGGAGGTCACTACCTCCATTCCTTTGCTTGAATTCCCCATCCCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGTCACTACCTCCATTCCTTTGCTTGAATTCCCCATCCCCTGCA  500

seq1  CTGAAGAACAGTCTGTCTACCAGCAAAAGAACTTGAACTGCATTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACAGTCTGTCTACCAGCAAAAGAACTTGAACTGCATTCCTTGA  550

seq1  TTCTCAGAAATCATCCCCCCATCTCCCCTCTCCCATGAGCCTTGTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAATCATCCCCCCATCTCCCCTCTCCCATGAGCCTTGTTTTCC  600

seq1  TCCAGGCAGACAACCTCCATCGTGTGCAAATACTTACTCCTGACTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGACAACCTCCATCGTGTGCAAATACTTACTCCTGACTTTTTC  650

seq1  TAAACATGAGCATTCCCATATGTAGGTGGCTTTACGTGGAATCTTTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGAGCATTCCCATATGTAGGTGGCTTTACGTGGAATCTTTCCAC  700

seq1  CTTCCTTTGCCATCTGTCTCCCATGTAGTCTTCCTTGAGACAGTACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGCCATCTGTCTCCCATGTAGTCTTCCTTGAGACAGTACAGCC  750

seq1  ACCAGGAAGACTGCCTTGATTTCTGCTTGGATGC-TTTTACAACTGCCCA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCAGGAAGACTGCCTTGATTTCTGCTTGGATGCTTTTTACAACTGCCCA  800

seq1  CATCTCCCTGATCTTTGTCTGTCCCTGCTGCTTTTGGAGAACACCATAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTGATCTTTGTCTGTCCCTGCTGCTTTTGGAGAACACCATAGA  850

seq1  CTGTGTAATAAAATAAGAATTAATTCAGTTGTGATTCT-GGAGGGTAGCA  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGTGTAATAAAATAAGAATTAATTCAGTTGTGATTCTGGGAGGGTAGCA  900

seq1  CTCCATGATGGACAGGCTTCATCTGGGTAGGACCATGATGAAAAAGCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGATGGACAGGCTTCATCTGGGTAGGACCATGATGAAAAAGCTTG  950

seq1  TGTGTGAGACAGAGTATCAAGCTAACCTGCTCTTTTTCTGGAACTGGCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGACAGAGTATCAAGCTAACCTGCTCTTTTTCTGGAACTGGCTT  1000

seq1  CCAGGAGAAT-GGCCTTGGTCACCTCTTGAAGTTCTGTACCTCTTAAGAT  1047
      | |||||||| ||||||||||||||||||||| |||||||||||| ||||
seq2  CAAGGAGAATGGGCCTTGGTCACCTCTTGAAG-TCTGTACCTCTT-AGAT  1048

seq1  AGCTACAATGGCTAATAAATTCCCAAATTAGTTTTGGAGATGGTACTCAA  1097
      ||||||||||||| |  ||||||  |||||  |||||||||| |||||||
seq2  AGCTACAATGGCTTAATAATTCC--AATTAAGTTTGGAGATGTTACTCAA  1096

seq1  ACCATAGTAC-CCATCACCACTTCTACTCCAGCCCTTGTGA  1137
      | |||||||| | ||||||||| ||||| |||||| |||||
seq2  A-CATAGTACTCAATCACCACTCCTACT-CAGCCC-TGTGA  1134


seq1: chr10_5820601_5821254
seq2: B6Ng01-331L16.g_73_728 (reverse)

seq1  GAGGTCCTGAG-TTCAAATCCCAGCAACCACGTGGTGGCTCACAAC-CAC  48
      |||||| |||| ||||||||||||||||||||||||||||||||||  ||
seq2  GAGGTCATGAGTTTCAAATCCCAGCAACCACGTGGTGGCTCACAACAAAC  50

seq1  CCATAATGAGATCTGGTGCCCTCTTCTGGTGTATTCAAAGACAGCTACAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGAGATCTGGTGCCCTCTTCTGGTGTATTCAAAGACAGCTACAG  100

seq1  TGTACGTATGTGTGATATTAAATAAATCTTTTAATAAATAAATAAATCTT  148
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTACGTATGTGTGATATTAAATAAATCTTTAAATAAATAAATAAATCTT  150

seq1  TAAAACAAAGAAAAAAAAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAGAAAAAAAAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAG  200

seq1  TTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAGGATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAGGATC  250

seq1  CAATGCCCTCTTCTGGTGTGTCTAAAGACAGCTACAGTGTACTCACCATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTCTTCTGGTGTGTCTAAAGACAGCTACAGTGTACTCACCATA  300

seq1  TATAAAAAATCAATAAATAAAATACTAAAAAAAAAAAAAAAGCACTGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAATCAATAAATAAAATACTAAAAAAAAAAAAAAAGCACTGTAA  350

seq1  TATTTGTGCTCTAGCTGTACATGTGCTTATCAGGCCTAAGACCTTCACTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGCTCTAGCTGTACATGTGCTTATCAGGCCTAAGACCTTCACTT  400

seq1  CACCCTGCCCAGTACCACAGGGGCTGAGTGGCCAGACCATGCCCAGAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCCCAGTACCACAGGGGCTGAGTGGCCAGACCATGCCCAGAGCA  450

seq1  CCCCTGAGAAGAACTTCACTTCAGTTCCCAGTACCCAAGCAAAACAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAGAAGAACTTCACTTCAGTTCCCAGTACCCAAGCAAAACAACTG  500

seq1  CTAAAGAGTTCCAAATAAATTTACCACATGTAATAAAACACCTGGATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTTCCAAATAAATTTACCACATGTAATAAAACACCTGGATTTT  550

seq1  TCTCTGAGAGAGGGTCTTACAGTGGAGCCTGGCTGGTCTGGATTTCACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGAGAGGGTCTTACAGTGGAGCCTGGCTGGTCTGGATTTCACTG  600

seq1  TGTAGACCAGGCCGAACTGTAATTCAGAGATCCTCCTGACTCTGCCTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCCGAACTGTAATTCAGAGATCCTCCTGACTCTGCCTCTT  650

seq1  GAATTC  654
      ||||||
seq2  GAATTC  656


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