BAC Information

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BAC

Clone NameB6Ng01-334G23
Chromosome10 (Build37)
Map Location 34,475,014 - 34,575,430
singlet/doubletdoublet
Overlap genenone
Upstream geneEG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC667824, LOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334G23.bB6Ng01-334G23.g
ACCGA119939GA119940
length1,171633
definitionB6Ng01-334G23.b B6Ng01-334G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,475,014 - 34,476,178)(34,574,789 - 34,575,430)
sequence
gaattctcaggaagggcttccctttaggtggtagtcatactgattagaag
tctttggcagcaagaagtcgctgctcttgagactgtgtgactttagaatg
ccttctgtttctggaaatgtacatggctatatctggcatgtaagcatact
tatgtttttagtacaaacagttacttttgcatacccatgatcacagaaat
atcaagaaacttactgaactttattcaagataattaatacattttcactg
caggatttttgtgattgagttgcttaaatttcctggaaggtggtggtgtt
aattcagcgtaagatttggcattgggtaagaaaaaaattcaaaaataaaa
ttaaagtcggaagggatttgggaagatggctcagtcattacaatacttgt
catacaagcactcatacctgagttaggattcccagcatgcggtggcatga
gcctgtgggcctggtactgggcagggagaaagagaagaatctctggaggc
tgttggccagctggtctgtcttatcaagtcatgagctccaggctcactga
aataataaggtggagaaggatgaaggaagatatcctacattcctttgacc
tctgtacaatgcacatacctgttcacatgcatgtgaatttgttcaggcct
ggagatacagaaacatgtatgccatacaccacacaccatatacaaataaa
gtaaaaggttaaaaatttaaaataacaaaatggaatgagcctgagtgtta
atttgaacaaaattgagacatcatggaaaagagcacagaggggacaaagg
tgtttaaatttgtctataataggtaaaataggcttgagttcaaagttaat
tttcacttgaagagtactgataacttttatactctgagagtaactgaact
tttccaaactatatttatttatacaaatacctattacaataaatggaaaa
atagctgctttgtttgatgcttcttatcagttagagtgagaccaatgatt
atagtaacattcatattattgagcttttatttttgtggccaggtcccatc
caaaagttgttatactatcaacacaattgcagctcaaccacaatctggtg
atacgctatccattctacccccatggaagagagaactggaaactcagtga
gaatagttccattggcccaca
gaattctcatcaaataatgtagcccagaagtaagcatgcagtaaggctgg
aagactgtcagggtgtaatcagcttaaggtaattgtcaactttttaacaa
ataaaactgatgtcaatgagacatgaaaagcctaagagagatgaggatag
caaagctatccaggaaaatgtgaagatcttttaaagtgactgctggtagc
aaaaaccacaaatagcttcctgcatgattaaagcagagcatctctgaaca
ggaatggccaactcgggattcatctggcaactctagctgaggaacagaac
tcttgactcttggttctgccctgaggacatattcatgaaatcaacttcaa
aagagaaaattctgccactacatatgaataaattggacaaaatagaagaa
aacaaagaggagggaaaggaggaggatggggaggtgaaggatgaaggatg
ttctcaggtctcttacaactactaaagttaaggatccctactagacttat
gtcagtcagctttgcaatctgatcatgtgttctctttcccttttcctctt
ttatttcttttcgctttctttttctcttcctcctcctcctcctcttcctc
caccttccttcctctctctctatctctctccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_34475014_34476178
seq2: B6Ng01-334G23.b_48_1218

seq1  GAATTCTCAGGAAGGGCTTCCCTTTAGGTGGTAGTCATACTGATTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAAGGGCTTCCCTTTAGGTGGTAGTCATACTGATTAGAAG  50

seq1  TCTTTGGCAGCAAGAAGTCGCTGCTCTTGAGACTGTGTGACTTTAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCAGCAAGAAGTCGCTGCTCTTGAGACTGTGTGACTTTAGAATG  100

seq1  CCTTCTGTTTCTGGAAATGTACATGGCTATATCTGGCATGTAAGCATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTTCTGGAAATGTACATGGCTATATCTGGCATGTAAGCATACT  150

seq1  TATGTTTTTAGTACAAACAGTTACTTTTGCATACCCATGATCACAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTAGTACAAACAGTTACTTTTGCATACCCATGATCACAGAAAT  200

seq1  ATCAAGAAACTTACTGAACTTTATTCAAGATAATTAATACATTTTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAACTTACTGAACTTTATTCAAGATAATTAATACATTTTCACTG  250

seq1  CAGGATTTTTGTGATTGAGTTGCTTAAATTTCCTGGAAGGTGGTGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTTGTGATTGAGTTGCTTAAATTTCCTGGAAGGTGGTGGTGTT  300

seq1  AATTCAGCGTAAGATTTGGCATTGGGTAAGAAAAAAATTCAAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCGTAAGATTTGGCATTGGGTAAGAAAAAAATTCAAAAATAAAA  350

seq1  TTAAAGTCGGAAGGGATTTGGGAAGATGGCTCAGTCATTACAATACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCGGAAGGGATTTGGGAAGATGGCTCAGTCATTACAATACTTGT  400

seq1  CATACAAGCACTCATACCTGAGTTAGGATTCCCAGCATGCGGTGGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGCACTCATACCTGAGTTAGGATTCCCAGCATGCGGTGGCATGA  450

seq1  GCCTGTGGGCCTGGTACTGGGCAGGGAGAAAGAGAAGAATCTCTGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGGCCTGGTACTGGGCAGGGAGAAAGAGAAGAATCTCTGGAGGC  500

seq1  TGTTGGCCAGCTGGTCTGTCTTATCAAGTCATGAGCTCCAGGCTCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCAGCTGGTCTGTCTTATCAAGTCATGAGCTCCAGGCTCACTGA  550

seq1  AATAATAAGGTGGAGAAGGATGAAGGAAGATATCCTACATTCCTTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGGTGGAGAAGGATGAAGGAAGATATCCTACATTCCTTTGACC  600

seq1  TCTGTACAATGCACATACCTGTTCACATGCATGTGAATTTGTTCAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAATGCACATACCTGTTCACATGCATGTGAATTTGTTCAGGCCT  650

seq1  GGAGATACAGAAACATGTATGCCATACACCACACACCATATACAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACAGAAACATGTATGCCATACACCACACACCATATACAAATAAA  700

seq1  GTAAAAGGTTAAAAATTTAAAATAACAAAATGGAATGAGCCTGAGTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGGTTAAAAATTTAAAATAACAAAATGGAATGAGCCTGAGTGTTA  750

seq1  ATTTGAACAAAATTGAGACATCATGGAAAAGAGCACAGAGGGGACAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACAAAATTGAGACATCATGGAAAAGAGCACAGAGGGGACAAAGG  800

seq1  TGTTTAAATTTGTCTATAATAGGTAAAATAGGCTTGAGTTCAAAGTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTTGTCTATAATAGGTAAAATAGGCTTGAGTTCAAAGTTAAT  850

seq1  TTTCACTTGAAGAGTACTGATAACTTTTATACTCTGAGAGTAACTGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTGAAGAGTACTGATAACTTTTATACTCTGAGAGTAACTGAACT  900

seq1  TTTCCAAACTATATTTATTTATACAAATACCTATTACAATAAATGGAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCCAAACTATATTTATTTATACAAATACCTATTACAATAAATGG-AAA  949

seq1  AATAGCTGCTTTGTTTGATGCTTCTTATCAGTTAGAGTGAGACCAATGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGCTTTGTTTGATGCTTCTTATCAGTTAGAGTGAGACCAATGAT  999

seq1  TATAGTAACATTCAATATTATTGAGCTTTTA-TTTTGT-GCCAGGTCCCA  1048
      ||||||||||||| ||||||||||||||||| |||||| |||||||||||
seq2  TATAGTAACATTC-ATATTATTGAGCTTTTATTTTTGTGGCCAGGTCCCA  1048

seq1  TCCAAAAGTTGTTATAACTATCAACACAATTGCAGCTC-ACCACAAATCT  1097
      ||||||||||||||| |||||||||||||||||||||| ||||| |||||
seq2  TCCAAAAGTTGTTAT-ACTATCAACACAATTGCAGCTCAACCAC-AATCT  1096

seq1  -GTGATACGCTAT-CATTCTACCCCCATGGAAGAG---ACTGG-AACTCA  1141
       |||||||||||| |||||||||||||||||||||   ||||| ||||||
seq2  GGTGATACGCTATCCATTCTACCCCCATGGAAGAGAGAACTGGAAACTCA  1146

seq1  GTGAGATTAGTTCAATT-GCCCAAA  1165
      |||||| |||||| ||| ||||| |
seq2  GTGAGAATAGTTCCATTGGCCCACA  1171

seq1: chr10_34574789_34575430
seq2: B6Ng01-334G23.g_64_696 (reverse)

seq1  AGGGAGAGAGAGGGAGAGAGAGAGAGAGAGAGGAAGG-AGGAGGAGGAAG  49
                ||||||||||| ||||||||||||||| ||| ||||||||
seq2  ----------AGGGAGAGAGATAGAGAGAGAGGAAGGAAGGTGGAGGAAG  40

seq1  AGGAGGAGGAGGAGGAAGAGAAAAAGAAAGAGAAAAGAAATAAAAGAGGA  99
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGAGGAGGAGGAGGAAGAGAAAAAGAAAGCGAAAAGAAATAAAAGAGGA  90

seq1  AAAGGGAAAGAGAACACATGATCAGATTGCAAAGCTGACTGACATAAGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAGAGAACACATGATCAGATTGCAAAGCTGACTGACATAAGTC  140

seq1  TAGTAGGGATCCTTAACTTTAGTAGTTGTAAGAGACCTGAGAACATCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGGATCCTTAACTTTAGTAGTTGTAAGAGACCTGAGAACATCCTT  190

seq1  CATCCTTCACCTCCCCATCCTCCTCCTTTCCCTCCTCTTTGTTTTCTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCACCTCCCCATCCTCCTCCTTTCCCTCCTCTTTGTTTTCTTCT  240

seq1  ATTTTGTCCAATTTATTCATATGTAGTGGCAGAATTTTCTCTTTTGAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCAATTTATTCATATGTAGTGGCAGAATTTTCTCTTTTGAAGT  290

seq1  TGATTTCATGAATATGTCCTCAGGGCAGAACCAAGAGTCAAGAGTTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATGAATATGTCCTCAGGGCAGAACCAAGAGTCAAGAGTTCTGT  340

seq1  TCCTCAGCTAGAGTTGCCAGATGAATCCCGAGTTGGCCATTCCTGTTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTAGAGTTGCCAGATGAATCCCGAGTTGGCCATTCCTGTTCAG  390

seq1  AGATGCTCTGCTTTAATCATGCAGGAAGCTATTTGTGGTTTTTGCTACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCTGCTTTAATCATGCAGGAAGCTATTTGTGGTTTTTGCTACCA  440

seq1  GCAGTCACTTTAAAAGATCTTCACATTTTCCTGGATAGCTTTGCTATCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACTTTAAAAGATCTTCACATTTTCCTGGATAGCTTTGCTATCCT  490

seq1  CATCTCTCTTAGGCTTTTCATGTCTCATTGACATCAGTTTTATTTGTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTTAGGCTTTTCATGTCTCATTGACATCAGTTTTATTTGTTAA  540

seq1  AAAGTTGACAATTACCTTAAGCTGATTACACCCTGACAGTCTTCCAGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGACAATTACCTTAAGCTGATTACACCCTGACAGTCTTCCAGCCT  590

seq1  TACTGCATGCTTACTTCTGGGCTACATTATTTGATGAGAATTC  642
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATGCTTACTTCTGGGCTACATTATTTGATGAGAATTC  633