BAC Information

Click to search

BAC

Clone NameB6Ng01-335L13
Chromosome10 (Build37)
Map Location 72,483,743 - 72,581,074
singlet/doubletdoublet
Overlap geneLOC432471
Upstream geneLOC100040505, Zwint
Downstream geneLOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335L13.bB6Ng01-335L13.g
ACCGA120856GA120857
length1,1241,146
definitionB6Ng01-335L13.b B6Ng01-335L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,579,926 - 72,581,074)(72,483,743 - 72,484,838)
sequence
gaattcaccgactatgctgtatagttctgcatctatataagcccttcaca
tatgtttaaatgagcacctacagttgatagactgagttctacccacatga
atgaagggttctgatttgtaaggtctcactacagataatagctgtggcca
taagaaacatttactggggtatgtggagaatttcagggagggaagtaaat
tttcttgttggctagacatactcagaaaggaagtataaaagtaaaataca
ataaactgggctttggttaacttcatagctcactgtcatatttagttacc
actccaatgcaatgttgtcatgcttgtgtaatactgaccccaaataccat
ggtatcttattaatttccagaaggagtgcccaaatcaccaccacaactac
caccatcatcatcatcatcattttatttatcaattgccacatttgatcaa
actataattctttgatttgggaatataaaccatttggtctatatatcttt
ttttagacagacttgatctattgacttgaaaggaaatgatcagagtattt
ttaaataataacctctcaaccagttaatcatatcagccactttatctagt
tacatttgcatctcctgtgtataattagcatgtgaaacacagctgatgca
atttataaaataaggcatatatgaatccggtacattaaaatagaaaagca
ccttttcaaactatggaaagtgtcactgaaatgactgactggtggtacta
gaaatacttgctacggaaaaagatcttggatgtgtgctttgatttaaaca
caggcacagttcttttacccattcattagaagacagtaatgcaaactaat
acgatgtccaacttttccataattatggaaaatgtatgttttaaaacact
cagtgacccaatatccatattaaaatatccagagtaaacactggtccatc
ttaaaataaatttctttctgaaatattgtttcagtggtcttgaatattaa
cgaaactaagagatacattttttttcagagaagaaaaaacggtagttagt
ttcttgcatgcagatgcttccagatttctcctgcatcggttccaatcatc
atgcatgaatttatgtatcagaaa
cagcctggtagtgctggcgggcgcctggccgtgcacttgggtgtagacgg
tatggaaggatccgcgggattcacatgctgacaatatgactccctgtctc
ttctgattttgcttaagggaaatttctcttctctggaagcatctgccttc
ctcggatacagtgtctcccccctgggtctgcatctaaattctcttcacgg
atgaagttgttttcctctaatcccaacacctggctgataatggaaaatgc
tagtacaatttcagggattgtttttagtaccagtgagggtggatgggaaa
aaattcttaatttgtacacttgatatgtttgctattggttagtaactggc
ttcctggatgcccactggtgctgaggcacaaggaatctggggaagaaaaa
cgtcgtattttattctcttgggtttaaaggcaagaaaataaagtctcaag
acctatttttttaaaatcccctacagtcatagtcatcgtttttgacattt
cagttgaaacttatttttcctgcctgcatctccttatttccccattgcct
gtagggtaaatttgaaatattccgaaatgattcataagctcatctacatg
aaactttcaaatcgcctctgctgtcaccacgggatgatattcctcttaag
gtcaagcattgtagaagttaacagtgtaaaacctacataaagcagttggg
taacgaagtatgcttcttagatgcagcccctctggccactcaagtccttt
ttttttttttttttagctcttaaattctattggctcattctctatcttaa
agagtgtcagttttgttttggtgggctggagagatggttcagaggttaag
agcaatgactgatcttctggaggtcctgagttcaaaccccagcaacccac
atggtggctcacaatcatctgtaatgtgattggatgccctcttctggtgt
gtctgaagacagctacagtgtacttacatctaaataaataaataaataat
aatctttaaaaaaaaaaaaccaccagatggccactagccataaaaagtgt
cagtttgatcaaatatttgagtgatctcatttccctcaatataatatacc
acattagccatttgcttgattgaacctcttgtcctagatgtcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72579926_72581074
seq2: B6Ng01-335L13.b_46_1169 (reverse)

seq1  TTTCTTGATACATAAA-TCATGCATGATGATTTTGAACAGAATAGGCAGG  49
      |||| ||||||||||| ||||||||||||| || |||| |   | |||||
seq2  TTTC-TGATACATAAATTCATGCATGATGA-TTGGAACCG---ATGCAGG  45

seq1  AGAAAATCCTGAAAAGCATCTGCCATGGCAGAAAACTAAAACTAACGTTT  99
      |||||   |||  ||||||||| ||| |||  |||||  ||||| |||||
seq2  AGAAA--TCTG-GAAGCATCTG-CAT-GCAAGAAACT--AACTACCGTTT  88

seq1  TTTTTTTTTTTTTTTCCGGAAAAAAAATGTTATCTCTTTAGTTTCGTTAA  149
      ||| || |        | ||||||||||| |||||| |||||||||||||
seq2  TTTCTTCT--------CTGAAAAAAAATG-TATCTC-TTAGTTTCGTTAA  128

seq1  ATATCAAGACCCACTGAAACATATTTTCAGAAAGAAATTTATTTTTAAGA  199
         |||||| |||||||||||   ||||||||||||||||| ||||||||
seq2  TATTCAAGA-CCACTGAAACAATATTTCAGAAAGAAATTTA-TTTTAAGA  176

seq1  TGGACCAGTGTTTACTCTGGATATTTTAAATATGGATATTTGGGTCACTG  249
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TGGACCAGTGTTTACTCTGGATATTTT-AATATGGATA-TTGGGTCACTG  224

seq1  AGTGTTTTAAAACATACATTTTCCATAATTATGGAAAAGTTGGACATCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTAAAACATACATTTTCCATAATTATGGAAAAGTTGGACATCGT  274

seq1  ATTAGTTTGCATTACTGTCTTCTAATGAATGGGTAAAAGAACTGTGCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTGCATTACTGTCTTCTAATGAATGGGTAAAAGAACTGTGCCTG  324

seq1  TGTTTAAATCAAAGCACACATCCAAGATCTTTTTCCGTAGCAAGTATTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATCAAAGCACACATCCAAGATCTTTTTCCGTAGCAAGTATTTC  374

seq1  TAGTACCACCAGTCAGTCATTTCAGTGACACTTTCCATAGTTTGAAAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCACCAGTCAGTCATTTCAGTGACACTTTCCATAGTTTGAAAAGG  424

seq1  TGCTTTTCTATTTTAATGTACCGGATTCATATATGCCTTATTTTATAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTATTTTAATGTACCGGATTCATATATGCCTTATTTTATAAAT  474

seq1  TGCATCAGCTGTGTTTCACATGCTAATTATACACAGGAGATGCAAATGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTGTGTTTCACATGCTAATTATACACAGGAGATGCAAATGTA  524

seq1  ACTAGATAAAGTGGCTGATATGATTAACTGGTTGAGAGGTTATTATTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAAAGTGGCTGATATGATTAACTGGTTGAGAGGTTATTATTTAA  574

seq1  AAATACTCTGATCATTTCCTTTCAAGTCAATAGATCAAGTCTGTCTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTGATCATTTCCTTTCAAGTCAATAGATCAAGTCTGTCTAAAA  624

seq1  AAAGATATATAGACCAAATGGTTTATATTCCCAAATCAAAGAATTATAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATATAGACCAAATGGTTTATATTCCCAAATCAAAGAATTATAGT  674

seq1  TTGATCAAATGTGGCAATTGATAAATAAAATGATGATGATGATGATGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAAATGTGGCAATTGATAAATAAAATGATGATGATGATGATGGTG  724

seq1  GTAGTTGTGGTGGTGATTTGGGCACTCCTTCTGGAAATTAATAAGATACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTGGTGGTGATTTGGGCACTCCTTCTGGAAATTAATAAGATACC  774

seq1  ATGGTATTTGGGGTCAGTATTACACAAGCATGACAACATTGCATTGGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTTGGGGTCAGTATTACACAAGCATGACAACATTGCATTGGAGT  824

seq1  GGTAACTAAATATGACAGTGAGCTATGAAGTTAACCAAAGCCCAGTTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTAAATATGACAGTGAGCTATGAAGTTAACCAAAGCCCAGTTTAT  874

seq1  TGTATTTTACTTTTATACTTCCTTTCTGAGTATGTCTAGCCAACAAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTACTTTTATACTTCCTTTCTGAGTATGTCTAGCCAACAAGAAA  924

seq1  ATTTACTTCCCTCCCTGAAATTCTCCACATACCCCAGTAAATGTTTCTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTCCCTCCCTGAAATTCTCCACATACCCCAGTAAATGTTTCTTA  974

seq1  TGGCCACAGCTATTATCTGTAGTGAGACCTTACAAATCAGAACCCTTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGCTATTATCTGTAGTGAGACCTTACAAATCAGAACCCTTCAT  1024

seq1  TCATGTGGGTAGAACTCAGTCTATCAACTGTAGGTGCTCATTTAAACATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGGTAGAACTCAGTCTATCAACTGTAGGTGCTCATTTAAACATA  1074

seq1  TGTGAAGGGCTTATATAGATGCAGAACTATACAGCATAGTCGGTGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGGCTTATATAGATGCAGAACTATACAGCATAGTCGGTGAATTC  1124

seq1: chr10_72483743_72484838
seq2: B6Ng01-335L13.g_69_1146

seq1  ATTCACATAATGACAATATGACTCCAAGCTCTCTTCTGATTTTGCTTAAG  50
      ||||||||  |||||||||||||||  | |||||||||||||||||||||
seq2  ATTCACATGCTGACAATATGACTCCCTG-TCTCTTCTGATTTTGCTTAAG  49

seq1  GGAAATTTCTCTTCTCTGGAAGCATCTGCCTTCCTCGGATACAGTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTCTCTTCTCTGGAAGCATCTGCCTTCCTCGGATACAGTGTCTC  99

seq1  CCCCCTGGCTCTGCATCTAAATTCTCTTCACACAGGAAGTTGTTTTCCTC  150
      |||||||| ||||||||||||||||||||||  | |||||||||||||||
seq2  CCCCCTGGGTCTGCATCTAAATTCTCTTCACGGATGAAGTTGTTTTCCTC  149

seq1  TAATCCGAACACCTGGCTGATAATGGAGAATGCTAGTACAATTTCAAGGA  200
      |||||| |||||||||||||||||||| |||||||||||||||||| |||
seq2  TAATCCCAACACCTGGCTGATAATGGAAAATGCTAGTACAATTTCAGGGA  199

seq1  TTGTTTTTAGTACCAGTGAGGGTGGATGGGAAAAAATTCTTAATTTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAGTACCAGTGAGGGTGGATGGGAAAAAATTCTTAATTTGTAC  249

seq1  ACTTGAGATGTTTGCTATTGGTTAGTAACTGGCTTCCTGGATGCCCACTG  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATGTTTGCTATTGGTTAGTAACTGGCTTCCTGGATGCCCACTG  299

seq1  GTGCTGAGGCACAAGGAATCTGGGGAAGAAAAACGTCGTATTTTATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGCACAAGGAATCTGGGGAAGAAAAACGTCGTATTTTATTCTC  349

seq1  TTGGTTTTAAAGGCAAGAAAATAAAGTCTCAAGACCTATTTTTTTAAAAT  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTAAAGGCAAGAAAATAAAGTCTCAAGACCTATTTTTTTAAAAT  399

seq1  CCCCTACAGTCATAGTCATCGTTTTTGACATTTCAGTTGAAACTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACAGTCATAGTCATCGTTTTTGACATTTCAGTTGAAACTTATTTT  449

seq1  TCCTGCCTGCATCTCCTTATTTCCCCATTGCCTGTAGGGTAAATTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGCATCTCCTTATTTCCCCATTGCCTGTAGGGTAAATTTGAAA  499

seq1  TATTCCGAAATGATTCATAAGCTCATCTACATGAAACTTTCAAATCGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGAAATGATTCATAAGCTCATCTACATGAAACTTTCAAATCGCCT  549

seq1  CTGCTGTCACCACGGGATGATATTCCTCTTAAGGTCAAGCATTGTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCACCACGGGATGATATTCCTCTTAAGGTCAAGCATTGTAGAAG  599

seq1  TTAACAGTGTAAAACCTACATAAAGCAGTTGGGTAACGAAGTATGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGTAAAACCTACATAAAGCAGTTGGGTAACGAAGTATGCTTCT  649

seq1  TAGATGCAGCCCCTCTGGCCACTCAAGTCCTTTTTTTTTTTTTTTTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAGCCCCTCTGGCCACTCAAGTCCTTTTTTTTTTTTTTTTTAGC  699

seq1  TCTTAAATTCTATTGGCTCATTCTCTATCTTAAAGAGTGTCAGTTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATTCTATTGGCTCATTCTCTATCTTAAAGAGTGTCAGTTTTGTT  749

seq1  TTGGTGGGCTGGAGAGATGGTTCAGAGGTTAAGAGCAATGACTGATCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGCTGGAGAGATGGTTCAGAGGTTAAGAGCAATGACTGATCTTC  799

seq1  TGGAGGTCCTGAGTTCAAACCCCAGCAA-CCACATGGTGGCTCACAATCA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGAGGTCCTGAGTTCAAACCCCAGCAACCCACATGGTGGCTCACAATCA  849

seq1  TCTGTAATGTGATTGGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATGTGATTGGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACA  899

seq1  GTGTACTTACATCTAAATAAATAAATAAATAAATAAATCTTTAAAAAAAA  949
      ||||||||||||||||||||||||||||||||   |||||||  ||||||
seq2  GTGTACTTACATCTAAATAAATAAATAAATAA--TAATCTTT--AAAAAA  945

seq1  AAAAAACAACCAAGATGGCAACTAGCCAATAAAAAGTGTCAGTTTTGATC  999
      ||||||| ||| ||||||| ||||||| |||||||||||||| |||||||
seq2  AAAAAACCACC-AGATGGCCACTAGCC-ATAAAAAGTGTCAG-TTTGATC  992

seq1  AAATATTTTGAGTGAATTCTCATTTTCCCTCAATATTAATATAACCACAT  1049
      ||||| |||||||||  ||||| |||||||||||| |||||| |||||  
seq2  AAATA-TTTGAGTGA--TCTCA-TTTCCCTCAATA-TAATAT-ACCAC--  1034

seq1  ATAAGCCATTTGCCTGATAGAA-CTCTTGTCCTAGGAAATGTCCAATT  1096
      || |||||||||| |||| ||| ||||||||||||   |||| |||||
seq2  ATTAGCCATTTGCTTGATTGAACCTCTTGTCCTAG---ATGT-CAATT  1078