BAC Information

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BAC

Clone NameB6Ng01-336G20
Chromosome10 (Build37)
Map Location 3,357,237 - 3,497,473
singlet/doubletdoublet
Overlap geneOprm1, A130090K04Rik
Upstream geneCnksr3
Downstream geneLOC237252, LOC100041224, Rgs17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G20.bB6Ng01-336G20.g
ACCGA121351GA121352
length1,0621,182
definitionB6Ng01-336G20.b B6Ng01-336G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,357,237 - 3,358,299)(3,496,284 - 3,497,473)
sequence
gaattcatctctgtattccttggtatccatatgccaccaattaatcaggc
aatgtatcattctttaagaggtgattagaaattctctggttttagatcat
ttcagtggcatttgtttttctgtgagctctttgagataacatgaccagag
gagatgaggcagacctgacatctcatagtcctgttcattgcttttaccca
aggctccaaattggtcttgcttttagagatggctttcgtggagaagaaac
actaaaattaactcagatcaaagctttacaactatgtttcctagagaatt
attacaaataacatttcttcactgaatactgcccaaagacaaaatgtcag
gtaaaaggtttctcttgaaacaaagtctacttaagcaagtcatggctcct
ttgttttagtggtcattatgtctggccctgggctcctgtgcccatgttcc
agtgaccattgtgtctggcactatggtcatgttatttctttgatactgtc
tggcctcagctgtgggtttttgagggtgctcatctccactgctacttcct
gtgtggcttcagaagagactctgaattggctcactgctcataaagcgttt
attgcctagtctttaatgtgattatggcagtcaacatcctcagactcctg
tctttaagaaacctgctccaggttgcttgcagtgtgagccctagggaagt
ggtagtagttaggggtgaagtaaggcatttagtctcacatgtcagatcta
gagaaaggaggtgaaaccaaattagcagtttgtcttgtaagtaacatgag
cataaaccctagctgacctaagagagccagtgctgccctgtgtgagtcta
acacacaggtcagaccctggagatccatttcccatctgtttccacagagc
ctcatttgggagagtctcaagaaccactagagataggttaatgggtattg
tgggaggtgcttgctattcacgaaaggaaaccctctgttctgtggcaccc
ttcacaggagaattgtcttggttcaacaagacagatgagacatgctgaaa
aggcacagtgag

gaattcatgttactgctcagtgggcacgcttcacagtgggaggttaatgg
aatgcacttactccatatccactacttgggaggaaaacagaaagaatttt
ttagaattgggtgcaaaagaaattgttttcgttctgtttctttttgatat
tttggtttattcattatcgagttagctggacaggaaggatgaaacaagag
aaagaattttatttaaaatatattttctaaggcctagtgtagtggtatat
ttctgcaatcttagtgctcaaaaagctgagacaggaggatctcaaattta
agctcaccttggtctactgagtaaaatcctatctaaagaaaaaataattt
tcatctttatagtgaatattatatacaaaaacatatttatgatgacccac
attctgagtacctaacaaaagtcttctctgactaattttttttttttgac
gtgacatgcagttgagatttgacagtctcccatttttagatctggaggaa
tggacaagtcagatggcacatgcaaaggagtgaactttgaacttttgtca
gcatgattacatgaattttgtcatcatctatggagatgggaggagaaaag
aaggtctctggttctctagcaatggttccagggactgcaagcagatgaag
atacaggacaatgttcagaagacaaccatcaatgtgttctctgatgagcc
ctcagtactcactctcttcactctttctcttctttcagctagaaaatctg
gaagcagaaactgctccattgccctaactgggtcccacgccatccagacc
ctcgctaaacttagaggctgccatctacttggaatcaggttgctgtcagg
gtttgtgggaggcgctggtttcctggaaaagcatctgatcctgcatcatt
caaagtcattcctctctggctattcacgctacacgtcagagacactcaga
ctgtgtcaagcactcagaaggaagagactgcagccactactgaatccagc
tcatgtacagaaacatccaatggaccacatactctgtggtatgtgaattg
tgatcacatagaaggtgacccttcctatgtggaaattttattcaagaaat
acttatgatctctcatcaggtaaaatagaaatgtcactgttaattccact
gtatgaatgcataaggaaggcttactctgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3357237_3358299
seq2: B6Ng01-336G20.b_43_1104

seq1  GAATTCATCTCTGTATTCCTTGGTATCCATATGCCACCAATTAATCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTGTATTCCTTGGTATCCATATGCCACCAATTAATCAGGC  50

seq1  AATGTATCATTCTTTAAGAGGTGATTAGAAATTCTCTGGTTTTAGATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCATTCTTTAAGAGGTGATTAGAAATTCTCTGGTTTTAGATCAT  100

seq1  TTCAGTGGCATTTGTTTTTCTGTGAGCTCTTTGAGATAACATGACCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCATTTGTTTTTCTGTGAGCTCTTTGAGATAACATGACCAGAG  150

seq1  GAGATGAGGCAGACCTGACATCTCATAGTCCTGTTCATTGCTTTTACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGCAGACCTGACATCTCATAGTCCTGTTCATTGCTTTTACCCA  200

seq1  AGGCTCCAAATTGGTCTTGCTTTTAGAGATGGCTTTCGTGGAGAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAAATTGGTCTTGCTTTTAGAGATGGCTTTCGTGGAGAAGAAAC  250

seq1  ACTAAAATTAACTCAGATCAAAGCTTTACAACTATGTTTCCTAGAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTAACTCAGATCAAAGCTTTACAACTATGTTTCCTAGAGAATT  300

seq1  ATTACAAATAACATTTCTTCACTGAATACTGCCCAAAGACAAAATGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAATAACATTTCTTCACTGAATACTGCCCAAAGACAAAATGTCAG  350

seq1  GTAAAAGGTTTCTCTTGAAACAAAGTCTACTTAAGCAAGTCATGGCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGGTTTCTCTTGAAACAAAGTCTACTTAAGCAAGTCATGGCTCCT  400

seq1  TTGTTTTAGTGGTCATTATGTCTGGCCCTGGGCTCCTGTGCCCATGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGTGGTCATTATGTCTGGCCCTGGGCTCCTGTGCCCATGTTCC  450

seq1  AGTGACCATTGTGTCTGGCACTATGGTCATGTTATTTCTTTGATACTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCATTGTGTCTGGCACTATGGTCATGTTATTTCTTTGATACTGTC  500

seq1  TGGCCTCAGCTGTGGGTTTTTGAGGGTGCTCATCTCCACTGCTACTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAGCTGTGGGTTTTTGAGGGTGCTCATCTCCACTGCTACTTCCT  550

seq1  GTGTGGCTTCAGAAGAGACTCTGAATTGGCTCACTGCTCATAAAGCGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTTCAGAAGAGACTCTGAATTGGCTCACTGCTCATAAAGCGTTT  600

seq1  ATTGCCTAGTCTTTAATGTGATTATGGCAGTCAACATCCTCAGACTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTAGTCTTTAATGTGATTATGGCAGTCAACATCCTCAGACTCCTG  650

seq1  TCTTTAAGAAACCTGCTCCAGGTTGCTTGCAGTGTGAGCCCTAGGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGAAACCTGCTCCAGGTTGCTTGCAGTGTGAGCCCTAGGGAAGT  700

seq1  GGTAGTAGTTAGGGGTGAAGTAAGGCATTTAGTCTCACATGTCAGATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGTTAGGGGTGAAGTAAGGCATTTAGTCTCACATGTCAGATCTA  750

seq1  GAGAAAGGAGGTGAAACCAAATTAGCAGTTTGTCTTGTAAGTAACATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAGGTGAAACCAAATTAGCAGTTTGTCTTGTAAGTAACATGAG  800

seq1  CATAAACCCTAGCTGACCTAAGAGAGCCAGTGCTGCCCTGTGTGAGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCCTAGCTGACCTAAGAGAGCCAGTGCTGCCCTGTGTGAGTCTA  850

seq1  ACACACAGGTCAGACCCTGGAGATCCATTTCCCATCTGTTTCCACAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGTCAGACCCTGGAGATCCATTTCCCATCTGTTTCCACAGAGC  900

seq1  CTCATTTGGGAGAGTCTCAAGAACCACTAGAGATAGGTTAATGGGTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGGGAGAGTCTCAAGAACCACTAGAGATAGGTTAATGGGTATTG  950

seq1  TGGGAGGTGCTTGCTATTCACGAAAGGAAAACCTCTGTTCCTGTGGCACC  1000
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGGGAGGTGCTTGCTATTCACGAAAGGAAACCCTCTGTT-CTGTGGCACC  999

seq1  CTTCACAGGAG-ATTGTCTTGGGTTCACAAGACAGATGAGACATGCTGAA  1049
      ||||||||||| |||||||||| |  |||||||||||||||||||||| |
seq2  CTTCACAGGAGAATTGTCTTGGTTCAACAAGACAGATGAGACATGCTG-A  1048

seq1  AAAGGCACAGTGAG  1063
      ||||||||||||||
seq2  AAAGGCACAGTGAG  1062


seq1: chr10_3496284_3497473
seq2: B6Ng01-336G20.g_64_1245 (reverse)

seq1  GGTCAGAGGTAGCTTTTCCTTTATGCATCACTACAGTGAATTTAACAAGT  50
      ||||||||  ||| ||  | ||||||||   ||||||| | ||||| |||
seq2  GGTCAGAGTAAGCCTT--CCTTATGCATTCATACAGTGGAATTAAC-AGT  47

seq1  GACA--TCTATTTTTCCCTTGAT--GAGATCATAAGTATTTCCTTGAAAT  96
      ||||  |||||||| ||  ||||  |||||||||||||||| ||||||  
seq2  GACATTTCTATTTTACC--TGATGAGAGATCATAAGTATTT-CTTGAA--  92

seq1  TAAAAATTCCACATAGGGAAGGGTCACCTTCTATGTTGATCACAATTCAC  146
      ||||| ||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TAAAATTTCCACATA-GGAAGGGTCACCTTCTATG-TGATCACAATTCAC  140

seq1  ATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTACATGAGCTGGAT  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACCACAGAGTA-TGTGGTCCATTGGATGTTTCTGTACATGAGCTGGAT  189

seq1  TCAGTAGTGGCCTGCAGTCTCTTCCTTCTGAGTGCTTGACACAGTCTGAG  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTGG-CTGCAGTCTCTTCCTTCTGAGTGCTTGACACAGTCTGAG  238

seq1  TGTCTCTGACGTGTAGCGTGAATAGCCAGAGAGGAATGACTTTGAATGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGACGTGTAGCGTGAATAGCCAGAGAGGAATGACTTTGAATGAT  288

seq1  GCAGGATCAGATGCTTTTCCAGGAAACCAGCGCCTCCCACAAACCCTGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCAGATGCTTTTCCAGGAAACCAGCGCCTCCCACAAACCCTGAC  338

seq1  AGCAACCTGATTCCAAGTAGATGGCAGCCTCTAAGTTTAGCGAGGGTCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTGATTCCAAGTAGATGGCAGCCTCTAAGTTTAGCGAGGGTCTG  388

seq1  GATGGCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATT  438

seq1  TTCTAGCTGAAAGAAGAGAAAGAGTGAAGAGAGTGAGTACTGAGGGCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTGAAAGAAGAGAAAGAGTGAAGAGAGTGAGTACTGAGGGCTCA  488

seq1  TCAGAGAACACATTGATGGTTGTCTTCTGAACATTGTCCTGTATCTTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAACACATTGATGGTTGTCTTCTGAACATTGTCCTGTATCTTCAT  538

seq1  CTGCTTGCAGTCCCTGGAACCATTGCTAGAGAACCAGAGACCTTCTTTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCAGTCCCTGGAACCATTGCTAGAGAACCAGAGACCTTCTTTTC  588

seq1  TCCTCCCATCTCCATAGATGATGACAAAATTCATGTAATCATGCTGACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCATCTCCATAGATGATGACAAAATTCATGTAATCATGCTGACAA  638

seq1  AAGTTCAAAGTTCACTCCTTTGCATGTGCCATCTGACTTGTCCATTCCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAAGTTCACTCCTTTGCATGTGCCATCTGACTTGTCCATTCCTC  688

seq1  CAGATCTAAAAATGGGAGACTGTCAAATCTCAACTGCATGTCACGTCAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTAAAAATGGGAGACTGTCAAATCTCAACTGCATGTCACGTCAAA  738

seq1  AAAAAAAAATTAGTCAGAGAAGACTTTTGTTAGGTACTCAGAATGTGGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTAGTCAGAGAAGACTTTTGTTAGGTACTCAGAATGTGGGT  788

seq1  CATCATAAATATGTTTTTGTATATAATATTCACTATAAAGATGAAAATTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAATATGTTTTTGTATATAATATTCACTATAAAGATGAAAATTA  838

seq1  TTTTTTCTTTAGATAGGATTTTACTCAGTAGACCAAGGTGAGCTTAAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTAGATAGGATTTTACTCAGTAGACCAAGGTGAGCTTAAATT  888

seq1  TGAGATCCTCCTGTCTCAGCTTTTTGAGCACTAAGATTGCAGAAATATAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCTCCTGTCTCAGCTTTTTGAGCACTAAGATTGCAGAAATATAC  938

seq1  CACTACACTAGGCCTTAGAAAATATATTTTAAATAAAATTCTTTCTCTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACACTAGGCCTTAGAAAATATATTTTAAATAAAATTCTTTCTCTTG  988

seq1  TTTCATCCTTCCTGTCCAGCTAACTCGATAATGAATAAACCAAAATATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTTCCTGTCCAGCTAACTCGATAATGAATAAACCAAAATATCA  1038

seq1  AAAAGAAACAGAACGAAAACAATTTCTTTTGCACCCAATTCTAAAAAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAGAACGAAAACAATTTCTTTTGCACCCAATTCTAAAAAATT  1088

seq1  CTTTCTGTTTTCCTCCCAAGTAGTGGATATGGAGTAAGTGCATTCCATTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTTTCCTCCCAAGTAGTGGATATGGAGTAAGTGCATTCCATTA  1138

seq1  ACCTCCCACTGTGAAGCGTGCCCACTGAGCAGTAACATGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCACTGTGAAGCGTGCCCACTGAGCAGTAACATGAATTC  1182


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