BAC Information

Click to search

BAC

Clone NameB6Ng01-339D10
Chromosome10 (Build37)4 (Build37)
Map Location 79,788,829 - 79,789,48245,466,016 - 45,467,108
singlet/doubletsingletsinglet
Overlap genePcsk4
Upstream geneEG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik
Downstream geneReep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339D10.bB6Ng01-339D10.g
ACCGA123274GA123275
length9951,103
definitionB6Ng01-339D10.b B6Ng01-339D10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,788,829 - 79,789,482)(45,466,016 - 45,467,108)
sequence
gaattcactttgttaggttccaaacccttggcaaggggctgagattccta
tttaacatatcaaagggagccaggggtggtggctttaatcccagcactcg
ggaggcagaggcaggccaatttctgagttcgaggccagcctggtctacag
tgtgagttctaggacagccagggctacacagagaaaccctgtctcgaaaa
aacaaacaaacaaacaaacaaacaaacatatcaaagtgaacctggatgac
aggttctcccagcatccctcagtccctacctgttttagggtaaggttggc
gcaccttggcccctaccctaattactctaggccagtggctggactgccct
tcctccaatgctcttccctaaacaatccagccattttggtgacctcccct
cttttgggcctcctggctgccatacctggctgcccctctgtcccctctcc
attcccctcccgcctctcctcacagggttcagggtcatgttccctctggc
ctctctcagatgtccctgcctctggctgtgtctcctttttatctacaata
aatctttctcctccagcatacctaagagcaatcacatccttgccttttta
tttaatttatttgatttttttcatctttttaaaagatttatttcattcag
tcatccgtctgtggacgtgcacagaggcagcacagcctaagaacccttca
aaagtcccatctcccaacatgacaggttgtttcctgccgtggtttggggc
aaacacattctaacaacagcaaaatctggacttcgcacatagacatccct
gtgaggtgttcggcatccttaccccactgaaggtattgatcccttccgcc
attccccgggtctcctctcggctgtgtgacggttctccgctccccagatc
tgtaaactcccctcttgcccttttaatttctttatcttttccttctgcat
ttttgatgaggtttcttcaacccttgacgggatctccgctgatga
gaattccacacaggaaaagaagacgtttgcagagacccttctaacagcac
gtaatggagctggtgctttcggtttcttaagactaataaatgaactcatt
aatatgtcagacagaaaaaccaaccagagaaacctgtccctcaataatat
ctagccaaaggagagagaggtccctacagctctaaccctgcccccacact
tcctttggtagacctgcatgttaaacattaattacggctgttactcatta
cacagcaaagagcttcccctacaaacacaattgttaatttcctcacaggc
ccaaggcattctgggaggccatgaaggagacaggaggcattctggaactc
tagagagcctgttgtgaggcagcacagggctggagtgtggagagcgctgt
ggccaggtttgagactccctgtgggaccctctgcagactctgggtcccca
aggaggcacaaggagcaggaagtgtgagccatgcccagagcacacagcac
cagggtactaacttcaaggtatctgcagctgtgggggcaatgaccagacc
aatgctaaggccaaagagcaaatggagcaattgcttccacctcagggatc
tcccaagctaccctgtaccaggttcaaatgaggccaatgcaacggtggtg
ggtggtgaagatactgttcattcagatgggcccaagttcactgctatggg
actgcaggtgagctgctgactgtctgagtttcagtacgttcatttatgtt
accacagtgaaacaacacccacacggcagggcttgacagggttaattcaa
accaggttcgtaaccactgctcaataaaaagctggcttcctgtccattcc
ttcttcccctcttaccatactgggggttcttttaaataactcagccaact
gagctgccttcggatgactctcaccttgttaggaagcagccacacacaca
caagacatcactttccctttgtccttttcaaagggccttggataatgtag
aggagtcaaaacttccagagggggctacccacggggcacagcaccagcac
ccccatgagattaacatgacacggtgcatctgggctgtttctggaccaga
cta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79788829_79789482
seq2: B6Ng01-339D10.b_111_570 (reverse)

seq1  AGAGGCAGGGAGGGACCTGGGGTCAGAGGGGCTCAGGATGGTCCCCTTGT  50
      |||||||||||   | |||     |||| ||| || || ||    | || 
seq2  AGAGGCAGGGA--CATCTG-----AGAGAGGC-CA-GAGGG--AACATGA  39

seq1  CCACTCCACCCAGCCCAAGTGCTCACCATGTACCACTGCTTGGAAA--AC  98
      || ||  ||||       |||      | |     | |   || ||    
seq2  CC-CTGAACCC------TGTG------AGGAGAGGCGGGAGGGGAATGGA  76

seq1  CAGGGGTCTGTGGGCACCACCAGGGAGCGTTTCACCC--GGCGCCTCAAA  146
       ||||| | | |||  |  ||||| |   |  || ||  |  |||  |||
seq2  GAGGGGACAGAGGG-GCAGCCAGGTA---TGGCAGCCAGGAGGCCCAAAA  122

seq1  GTCTGCTGCTCAAACCAGCGCACCTGCAGGGTGCACAGGGGCTGAAC---  193
      |   |  | ||  ||||      ||| |  ||  |   |||  || |   
seq2  GAGGGGAGGTC--ACCAAAATGGCTGGATTGTTTA---GGGAAGAGCATT  167

seq1  -CAGCTACCGCAG----GGGTGTGGCCCCGCAGCCAGGAGGGCTGAAGAC  238
        ||  |  ||||    |    |||||  | ||  |  ||||  |  | |
seq2  GGAGGAAGGGCAGTCCAGCCACTGGCCTAG-AGTAATTAGGGTAGGGGCC  216

seq1  CTGCTTGGACACACTGCTAAACTAACAGGCATGTCGG---TGGGAGCTGC  285
        | |  | ||  ||  ||  |||| |  || || ||   || | | |||
seq2  AAGGTGCGCCAACCT--TACCCTAAAA--CAGGTAGGGACTGAGGGATGC  262

seq1  TCTTTGGGTCCCCCATGATCCTCAAAGCTGTGGGGTT---TTTG-TTTGT  331
          ||||    || || || || |        ||||   |||| | |||
seq2  ----TGGGAGAACC-TG-TCATCCA--------GGTTCACTTTGATATGT  298

seq1  TTGTTTGCTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTCGAGA  381
      |||||||             |||| |||||||   |||||||||||||||
seq2  TTGTTTG-------------TTTG-TTTGTTT--GTTTGTTTTTTCGAGA  332

seq1  CAAGGCTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  431
      || || |||||||| |||||||||||||||| ||||||||  ||||||||
seq2  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACACTGTAGACC  382

seq1  AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTACCTCCCAAGTGCTG  481
      |||||||||||||||||||||||  |||||||||| |||||| |||||||
seq2  AGGCTGGCCTCGAACTCAGAAATTGGCCTGCCTCTGCCTCCCGAGTGCTG  432

seq1  GGATTAAAGGCGTGTGCCACCAC-GGCT---TAAAGCTGTGTTTTCAGAC  527
      ||||||||| |     ||||| | ||||   |                  
seq2  GGATTAAAGCC----ACCACCCCTGGCTCCCT------------------  460

seq1  ACAGCCTGATGATTCATGATTGGAGCTGCTGGGAGCGAATGCAGCTCTCC  577
                                                        
seq2  --------------------------------------------------  460

seq1  TGCCCCACGCATTTCTCCTCCCGGTTCCTAGGTCCTTCTCACCAAGTCCT  627
                                                        
seq2  --------------------------------------------------  460

seq1  GCTGGCACCAAGTCCTGCTGGCTCCCT  654
                                 
seq2  ---------------------------  460

seq1: chr4_45466016_45467108
seq2: B6Ng01-339D10.g_67_1169

seq1  GAATTCCACACAGGAAAAGAAGACGTTTGCAGAGACCCTTCTAACAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAGGAAAAGAAGACGTTTGCAGAGACCCTTCTAACAGCAC  50

seq1  GTAATGGAGCTGGTGCTTTCGGTTTCTTAAGACTAATAAATGAACTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGCTGGTGCTTTCGGTTTCTTAAGACTAATAAATGAACTCATT  100

seq1  AATATGTCAGACAGAAAAACCAACCAGAGAAACCTGTCCCTCAATAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCAGACAGAAAAACCAACCAGAGAAACCTGTCCCTCAATAATAT  150

seq1  CTAGCCAAAGGAGAGAGAGGTCCCTACAGCTCTAACCCTGCCCCCACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAGGAGAGAGAGGTCCCTACAGCTCTAACCCTGCCCCCACACT  200

seq1  TCCTTTGGTAGACCTGCATGTTAAACATTAATTACGGCTGTTACTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGTAGACCTGCATGTTAAACATTAATTACGGCTGTTACTCATTA  250

seq1  CACAGCAAAGAGCTTCCCCTACAAACACAATTGTTAATTTCCTCACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAAGAGCTTCCCCTACAAACACAATTGTTAATTTCCTCACAGGC  300

seq1  CCAAGGCATTCTGGGAGGCCATGAAGGAGACAGGAGGCATTCTGGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCATTCTGGGAGGCCATGAAGGAGACAGGAGGCATTCTGGAACTC  350

seq1  TAGAGAGCCTGTTGTGAGGCAGCACAGGGCTGGAGTGTGGAGAGCGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCCTGTTGTGAGGCAGCACAGGGCTGGAGTGTGGAGAGCGCTGT  400

seq1  GGCCAGGTTTGAGACTCCCTGTGGGACCCTCTGCAGACTCTGGGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTTGAGACTCCCTGTGGGACCCTCTGCAGACTCTGGGTCCCCA  450

seq1  AGGAGGCACAAGGAGCAGGAAGTGTGAGCCATGCCCAGAGCACACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCACAAGGAGCAGGAAGTGTGAGCCATGCCCAGAGCACACAGCAC  500

seq1  CAGGGTACTAACTTCAAGGTATCTGCAGCTGTGGGGGCAATGACCAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACTAACTTCAAGGTATCTGCAGCTGTGGGGGCAATGACCAGACC  550

seq1  AATGCTAAGGCCAAAGAGCAAATGGAGCAATTGCTTCCACCTCAGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAGGCCAAAGAGCAAATGGAGCAATTGCTTCCACCTCAGGGATC  600

seq1  TCCCAAGCTACCCTGTACCAGGTTCAAATGAGGCCAATGCAACGGTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCTACCCTGTACCAGGTTCAAATGAGGCCAATGCAACGGTGGTG  650

seq1  GGTGGTGAAGATACTGTTCATTCAGATGGGCCCAAGTTCACTGCTATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAAGATACTGTTCATTCAGATGGGCCCAAGTTCACTGCTATGGG  700

seq1  ACTGCAGGTGAGCTGCTGACTGTCTGAGTTTCAGTACGTTCATTTATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGTGAGCTGCTGACTGTCTGAGTTTCAGTACGTTCATTTATGTT  750

seq1  ACCACAGTGAAACAACACCCACACGGCAGGGCTTGACAGGGTTAATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTGAAACAACACCCACACGGCAGGGCTTGACAGGGTTAATTCAA  800

seq1  ACCAGGTTCGTAACCACTGCTCAAT-AAAAGCTGGCTTCCTGTCCATTCC  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCAGGTTCGTAACCACTGCTCAATAAAAAGCTGGCTTCCTGTCCATTCC  850

seq1  TTCTTCCCCTCTTACCATACT-GGGGTTCTTTTAAATAACTCAGCCAACT  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTTCCCCTCTTACCATACTGGGGGTTCTTTTAAATAACTCAGCCAACT  900

seq1  GAGCTGCC-TCGGATGACTCTCACC-TGTTAGGAAGCAGCCACACACACA  946
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GAGCTGCCTTCGGATGACTCTCACCTTGTTAGGAAGCAGCCACACACACA  950

seq1  CAAGACATCACTTTCCCTTTGTCC-TTTCAAAGGCCCTT-GATAATGTAG  994
      |||||||||||||||||||||||| ||||||||| |||| ||||||||||
seq2  CAAGACATCACTTTCCCTTTGTCCTTTTCAAAGGGCCTTGGATAATGTAG  1000

seq1  AGGAGTCAAAAC-TCCAGA-GGGGCTACCCACGGGGCACAGCACCAGCA-  1041
      |||||||||||| |||||| ||||||||||||||||||||||||||||| 
seq2  AGGAGTCAAAACTTCCAGAGGGGGCTACCCACGGGGCACAGCACCAGCAC  1050

seq1  CCCCATGAGATTACCATGACAACGGTGCACCT-GGCTG-TTCTGGAACAG  1089
      ||||||||||||| |||||| |||||||| || ||||| ||||||| |||
seq2  CCCCATGAGATTAACATGAC-ACGGTGCATCTGGGCTGTTTCTGGACCAG  1099

seq1  ACTA  1093
      ||||
seq2  ACTA  1103