BAC Information

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BAC

Clone NameB6Ng01-340H24
Chromosome10 (Build37)4 (Build37)
Map Location 101,429,659 - 101,430,47158,203,714 - 58,204,002
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340H24.bB6Ng01-340H24.g
ACCGA124188GA124189
length1,0641,063
definitionB6Ng01-340H24.b B6Ng01-340H24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,429,659 - 101,430,471)(58,203,714 - 58,204,002)
sequence
gaattcacagtagttgcatagcaccaacaagacaagtgaaagctataatc
cgacaaatttccacatggagaacggaaatgggaaaacagtctacatgtag
tcaggaaattattagcctttgatagctggttgaaaagggagaagtctttt
caagggtttggtcactatagttttaacttataccagtagatggtcacatg
gttaagagtatgttgaaaagaacaattctatttcatgaggttaaaaaaaa
aacagaaaaagttatgttagtagatgtagtggtaagtggttctgggcggg
gttagagtgtcacagcaggtcctctccagtacgctgcaacaagaacaact
gggactacaagttgggttcacgcagcaactttactttgggctttttcttt
tatagctctcttccccagcagcttcttcttcttcttcttcttctttttta
attaggtatttatttcatttacatttccaatgctaacccaaaagtccccc
acatgctcccccacccactcccctaccaacctactcccacttcttggccc
tggcgttctcctgtactggggcatataaagtttgcacaacaaatgggcct
ctctttccactgatggctgactaggccatcttctgattcatatgcagcta
gagacacgagctccagggggtactggttagttcatattgttgttccacct
ataggattgcagattccttcagctccttgggtactttctctagctcctcc
attggggtccctgtgatccatccaatagctgactgtgagcatccacttct
gtgtttgccaggccctggcatagtctcacaagagacagccatatctgggt
cctttcagcaaaatcttgctagtgtattcaatggtgtcagggttaggaag
ctgattatgggatggatcgggccagaggataggtgtccaccaaacccagg
agggctttgccatccccagcagcttcttcttagggcaggagctaaactac
tcctaattacttctgcttctcttactctacttctactcacgcagagctta
aacctacttatctt
gaattcaaggtgatattgctcaatagagtgcttcaatgacccaacatgaa
gtcttggctttgaagaaaactttagaagtttagaagcaatcccttataaa
gagaacaattttcactgtggatttaggaataagctgaattcagcaaccag
ttgcgcaaggtgctagttaaaccttattttgttgttatttctctagagcc
tcacaatgtatctccgacaggtctaatactagagctgtagtgcaggctaa
ccatgaactcataatcttcctgtctcaatctcccaagagttacacccaac
aggtttggaccaccacttaaagctgaaacagtctgtaattgaaaacttgt
aaaaaggagctaacacgtcacattagtaattaaagaaggtaagagtatgc
tactttctttctactcttttttgtttgtttgttttcttatggaaatcaaa
gtaaaggtttattaataagctgaaatcagaacttccaaattatccagcta
tatgattgcagggcatctacccaaagattccacattcctctaaggacata
tctgcacattcaaggtaatagatgctagactcatagtagcacaggaaagg
tatacggttagatatacttcaatagacgcatggataataaaagtggggta
cacatacataatataattttattcagtcataatgataaatgaaataacat
aacttacagggaaatggatagtccttggaagtgttgtattgagaggatta
acttatattccaatataaaactaaaatactacatgttctctctcatatgt
gaccatcatcttctttttttactggatattttctttatttatatttcaaa
tgttatcccctttcatggtttcctctgtgaaaaacactgttcccctatcc
cctccctcctccctttgctcactaacccaccactccaacttcctgggccc
tgccattctcccaccactggagcatagagccttcacatgaccagggcctc
tcctcccattggtgcccaactaggctatcctctgctaacatatgcagctg
gagccatgagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_101429659_101430471
seq2: B6Ng01-340H24.b_46_858

seq1  GAATTCACAGTAGTTGCATAGCACCAACAAGACAAGTGAAAGCTATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGTTGCATAGCACCAACAAGACAAGTGAAAGCTATAATC  50

seq1  CGACAAATTTCCACATGGAGAACGGAAATGGGAAAACAGTCTACATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAATTTCCACATGGAGAACGGAAATGGGAAAACAGTCTACATGTAG  100

seq1  TCAGGAAATTATTAGCCTTTGATAGCTGGTTGAAAAGGGAGAAGTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATTATTAGCCTTTGATAGCTGGTTGAAAAGGGAGAAGTCTTTT  150

seq1  CAAGGGTTTGGTCACTATAGTTTTAACTTATACCAGTAGATGGTCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTTTGGTCACTATAGTTTTAACTTATACCAGTAGATGGTCACATG  200

seq1  GTTAAGAGTATGTTGAAAAGAACAATTCTATTTCATGAGGTTAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGTATGTTGAAAAGAACAATTCTATTTCATGAGGTTAAAAAAAA  250

seq1  AACAGAAAAAGTTATGTTAGTAGATGTAGTGGTAAGTGGTTCTGGGCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAAAGTTATGTTAGTAGATGTAGTGGTAAGTGGTTCTGGGCGGG  300

seq1  GTTAGAGTGTCACAGCAGGTCCTCTCCAGTACGCTGCAACAAGAACAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTGTCACAGCAGGTCCTCTCCAGTACGCTGCAACAAGAACAACT  350

seq1  GGGACTACAAGTTGGGTTCACGCAGCAACTTTACTTTGGGCTTTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTACAAGTTGGGTTCACGCAGCAACTTTACTTTGGGCTTTTTCTTT  400

seq1  TATAGCTCTCTTCCCCAGCAGCTTCTTCTTCTTCTTCTTCTTCTTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCTCTTCCCCAGCAGCTTCTTCTTCTTCTTCTTCTTCTTTTTTA  450

seq1  ATTAGGTATTTATTTCATTTACATTTCCAATGCTAACCCAAAAGTCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTATTTCATTTACATTTCCAATGCTAACCCAAAAGTCCCCC  500

seq1  ACATGCTCCCCCACCCACTCCCCTACCAACCTACTCCCACTTCTTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCCCCCACCCACTCCCCTACCAACCTACTCCCACTTCTTGGCCC  550

seq1  TGGCGTTCTCCTGTACTGGGGCATATAAAGTTTGCACAACAAATGGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTCTCCTGTACTGGGGCATATAAAGTTTGCACAACAAATGGGCCT  600

seq1  CTCTTTCCACTGATGGCTGACTAGGCCATCTTCTGATTCATATGCAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCACTGATGGCTGACTAGGCCATCTTCTGATTCATATGCAGCTA  650

seq1  GAGACACGAGCTCCAGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACGAGCTCCAGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCT  700

seq1  ATAGGATTGCAGATTCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTGCAGATTCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCC  750

seq1  ATTGGGGTCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCT  800

seq1  GTGTTTGCCAGGC  813
      |||||||||||||
seq2  GTGTTTGCCAGGC  813

seq1: chr4_58203714_58204002
seq2: B6Ng01-340H24.g_879_1127 (reverse)

seq1  GGACCCATGGCTCCAGCTACATATG-TAGCAGAGGATGGCCTTGTGGGAC  49
      |||| ||||||||||||| |||||| ||||||||||| |||| || || |
seq2  GGACTCATGGCTCCAGCTGCATATGTTAGCAGAGGATAGCCTAGTTGGGC  50

seq1  ATCAACAGGAAGAGAGGCCCTTAATCCCAGGAAGGCTCAAGTCCCCAAT-  98
      | |||  ||| ||||||||| |  ||    |||||||| |  | ||| | 
seq2  ACCAATGGGAGGAGAGGCCC-TGGTCATGTGAAGGCTCTATGCTCCAGTG  99

seq1  GTAGGGGACTTTGA-GGACAGGGAGGCTGGAGTGAATGGGTAAGGGAACA  147
      || || || |   | || |  ||| | |||||||  ||||| || || ||
seq2  GTGGGAGAATGGCAGGGCCCAGGAAGTTGGAGTG-GTGGGTTAGTGAGCA  148

seq1  CCCTCAAAGAAGCAGGGAAAGGGGCATGGGAAGGGGGTTTCTGGGTGGGG  197
           || | || |||| | |||  | |||||  | |||| |    | ||
seq2  -----AAGGGAGGAGGG-AGGGGATAGGGGAACAGTGTTTTTCACAGAGG  192

seq1  GAACCAGAAAAGAGGGAAAACATTTGAAATGTAAATAAAGAAAATATCCA  247
       |||||  |||| |||| |||||||||||| |||||||||||||||||||
seq2  AAACCATGAAAG-GGGATAACATTTGAAATATAAATAAAGAAAATATCCA  241

seq1  AGAAAAAAGAAGAAAAAAAGAAATAAAATATCCAGTAAAAAA  289
        ||||||                                  
seq2  GTAAAAAA----------------------------------  249