BAC Information

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BAC

Clone NameB6Ng01-345A20
Chromosome10 (Build37)
Map Location 125,114,304 - 125,214,544
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
Downstream geneLrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345A20.bB6Ng01-345A20.g
ACCGA127376GA127377
length1,1591,043
definitionB6Ng01-345A20.b B6Ng01-345A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,114,304 - 125,115,464)(125,213,506 - 125,214,544)
sequence
gaattcatttcatctaatcatgaataatgctcacattttttgaacattcc
agtgtgttgtgggaagtgctaatttttcggtgtgccttatcatgatcaat
cttatccatctgtcatttgttttttctgtctcctccttcccctcttgaac
tcataatttatgtttgctctgcaggagaaagattgctccctggccaggcc
aggacaaagatggcagatttgcagctcatagaaaagattaaatcacatag
catcaaggattatttaaagctggtacaattcgaggcactgaaatggcaga
agtcactggaagagtggagaaaggaccaaagcctaaatcagcaacctaag
ggatcatcttaatgtgccctgcctaaatcagcaacctaagggatcatctt
aatgtgccctgcctaaatcagcaacctaagggatcatcttaatgtgccct
gcctaaatcagcaacctaagggatcatcttaatgtgccctgcctaaatca
gcaacctaagggatcatcttaatgtgccctgcctaaatcagcaacctaaa
agggtcatcacttaatacccaaggccttcaccataattcttatctggatt
aatttaccttgttgtcttacattccgagttcttgtcatagagcaaaaacc
tattcatataggatttgatatcatgtgtcatattgttctttcaaatagtc
atactttcttgtatctgatgtctaaagattctccagcattcaaatgtgtg
ttaaatgacataaaagataaataagtactctgccatgccaccattgaggg
gtgtcccttgccaccacacttctgatatggatacatttcacttaattctc
tttagttcttacttttgctcataggtttgagaacatttatgatgtgttct
ttcctcaagtctacatatttatgataggtcattcttctataatggagaat
agtttacattagaaatgcttattaacgccatcttacatttttaaattacc
aacaaagttacccttagagcatgcatcttcattgaccatgtttttccgta
gctgtgggatagagcttctcttgtgcaagaacgggacgccagtgctcgag
catatcgtctcagtcctcacctcacataatgtgtggtgaggggctagaaa
acccaggcc
gaattcagggatctgcctgtctctgcctcccaagtgctgggattaaaggt
gttcaccactacacttggcttcaaatttttcgtatgataacgcatggtag
atgaataaattcattgctgttgaatgtctaataggggtccattaccatgt
attcaatggaaccatttctgttgtgaaagcatttgggaggtttatcccca
ccattatttagggctattctggttacacttcttggtagattagctgctgt
ttctgcagttgattactgtgacaccggacgtgtggtgtgtcattttgtga
ttcctgtttctacatgattgcagagatatttatgtatacaatccctctgc
ctgctgaggccccatcaacagcaaagaaagatggtaataagaaaaataaa
ttcgttttgtaggaattttgaaacaaccgaatgtgatccctagaaagtta
ttctcataggctgctcctctcttagggggcatagcaagcctcccagtggc
ctattctttatttatgatgcactttctgcttttgcctcatgctgcggctc
agctggtaatcttgttttgcaatgcaatatggccaggagccctgggacca
gctccctaatgcattggttctcagactggagcccaagaactcctgtgggg
ccccgcaggagtgcaaagtcctgaaagctgaaaatgttatctgggcaaca
tgctaagagaaactggtagaggagaccaggagggatagtgaggggtgggg
gagagaacaaggctaaaattcatttcttggtatcaggaagcatgcagcat
tccacaggaagggtctgaccgtgaatagcattgtgattgttagctgtaag
acacatgggacaaatcagtagaactctaccgtttcattcatgggaaaatt
gggctttaaagtcacaaaggaatttgagagtaccttcgtgggagcaaagt
ggttaaggcattttaagggccgtgtaaacatgggaaagtgagggaggcga
gtgtgggtgtggggaatcacagaagaggcaagaaatgcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_125114304_125115464
seq2: B6Ng01-345A20.b_47_1205

seq1  GAATTCATTTCATCTAATCATGAATAATGCTCACATTTTTTGAACATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCATCTAATCATGAATAATGCTCACATTTTTTGAACATTCC  50

seq1  AGTGTGTTGTGGGAAGTGCTAATTTTTCGGTGTGCCTTATCATGATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTGTGGGAAGTGCTAATTTTTCGGTGTGCCTTATCATGATCAAT  100

seq1  CTTATCCATCTGTCATTTGTTTTTTCTGTCTCCTCCTTCCCCTCTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCATCTGTCATTTGTTTTTTCTGTCTCCTCCTTCCCCTCTTGAAC  150

seq1  TCATAATTTATGTTTGCTCTGCAGGAGAAAGATTGCTCCCTGGCCAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTATGTTTGCTCTGCAGGAGAAAGATTGCTCCCTGGCCAGGCC  200

seq1  AGGACAAAGATGGCAGATTTGCAGCTCATAGAAAAGATTAAATCACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGATGGCAGATTTGCAGCTCATAGAAAAGATTAAATCACATAG  250

seq1  CATCAAGGATTATTTAAAGCTGGTACAATTCGAGGCACTGAAATGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGATTATTTAAAGCTGGTACAATTCGAGGCACTGAAATGGCAGA  300

seq1  AGTCACTGGAAGAGTGGAGAAAGGACCAAAGCCTAAATCAGCAACCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGGAAGAGTGGAGAAAGGACCAAAGCCTAAATCAGCAACCTAAG  350

seq1  GGATCATCTTAATGTGCCCTGCCTAAATCAGCAACCTAAGGGATCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCTTAATGTGCCCTGCCTAAATCAGCAACCTAAGGGATCATCTT  400

seq1  AATGTGCCCTGCCTAAATCAGCAACCTAAGGGATCATCTTAATGTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCCTGCCTAAATCAGCAACCTAAGGGATCATCTTAATGTGCCCT  450

seq1  GCCTAAATCAGCAACCTAAGGGATCATCTTAATGTGCCCTGCCTAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATCAGCAACCTAAGGGATCATCTTAATGTGCCCTGCCTAAATCA  500

seq1  GCAACCTAAGGGATCATCTTAATGTGCCCTGCCTAAATCAGCAACCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTAAGGGATCATCTTAATGTGCCCTGCCTAAATCAGCAACCTAAA  550

seq1  AGGGTCATCACTTAATACCCAAGGCCTTCACCATAATTCTTATCTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATCACTTAATACCCAAGGCCTTCACCATAATTCTTATCTGGATT  600

seq1  AATTTACCTTGTTGTCTTACATTCCGAGTTCTTGTCATAGAGCAAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTTGTTGTCTTACATTCCGAGTTCTTGTCATAGAGCAAAAACC  650

seq1  TATTCATATAGGATTTGATATCATGTGTCATATTGTTCTTTCAAATAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATAGGATTTGATATCATGTGTCATATTGTTCTTTCAAATAGTC  700

seq1  ATACTTTCTTGTATCTGATGTCTAAAGATTCTCCAGCATTCAAATGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCTTGTATCTGATGTCTAAAGATTCTCCAGCATTCAAATGTGTG  750

seq1  TTAAATGACATAAAAGATAAATAAGTACTCTGCCATGCCACCATTGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACATAAAAGATAAATAAGTACTCTGCCATGCCACCATTGAGGG  800

seq1  GTGTCCCTTGCCACCACACTTCTGATATGGATACATTTCACTTAATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTGCCACCACACTTCTGATATGGATACATTTCACTTAATTCTC  850

seq1  TTTAGTTCTTACTTTTGCTCATAGGTTTGAGAACATTTATGATGTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTTACTTTTGCTCATAGGTTTGAGAACATTTATGATGTGTTCT  900

seq1  TTCCTCAAGTCTACATATTTATGATAGGTCATTCTTCTATAATGGAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGTCTACATATTTATGATAGGTCATTCTTCTATAATGGAGAAT  950

seq1  AGTTTACATTAGAAATGCTTATTAACGCCATCTTACATTTTTAAATTACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACATTAGAAATGCTTATTAACGCCATCTTACATTTTTAAATTACC  1000

seq1  AACAAAGTTAACCTTAGAGCATGCATCTTCATTGACCCAATG-TTTTCCG  1049
      |||||||||| ||||||||||||||||||||||||||  ||| |||||||
seq2  AACAAAGTTACCCTTAGAGCATGCATCTTCATTGACC--ATGTTTTTCCG  1048

seq1  TAGCTGTGGGATAAGAGGCTTCTCTTGTGGAAAGAAACGGACGCCAGTTG  1099
      |||||||||||| ||| ||||||||||| | |||||  ||||||||| ||
seq2  TAGCTGTGGGAT-AGA-GCTTCTCTTGT-GCAAGAACGGGACGCCAG-TG  1094

seq1  TTCGAGGCATATCGTCTTCAGT-CTCACCTCACATTAATGT---GTGAGG  1145
       |||| |||||||||| ||||| ||||||||||| ||||||   ||||||
seq2  CTCGA-GCATATCGTC-TCAGTCCTCACCTCACA-TAATGTGTGGTGAGG  1141

seq1  GG-AAGAAAA-CCAGGCC  1161
      ||  |||||| |||||||
seq2  GGCTAGAAAACCCAGGCC  1159

seq1: chr10_125213506_125214544
seq2: B6Ng01-345A20.g_62_1104 (reverse)

seq1  TCTCTGCCATCTCTTGCCTTCTTCCTGCTGATCCCCCAACACCCACCACT  50
      |||||| ||| ||||||| |||| ||| |||| |||| ||||||| ||||
seq2  TCTCTG-CATTTCTTGCC-TCTT-CTG-TGATTCCCC-ACACCCA-CACT  44

seq1  CGCCTCCCTTCACTTT-CCATGTTTACACGGGCCCTAAAATGCC-TAACC  98
      |||||||| ||||||| |||||||||||||| || ||||||||| |||||
seq2  CGCCTCCC-TCACTTTCCCATGTTTACACGGCCCTTAAAATGCCTTAACC  93

seq1  ACTTTGCTCCCACG-AGGTACTCTC-AATTCCTTTGTGACTTT-AAGCC-  144
      |||||||||||||| |||||||||| ||||||||||||||||| ||||| 
seq2  ACTTTGCTCCCACGAAGGTACTCTCAAATTCCTTTGTGACTTTAAAGCCC  143

seq1  -AATTTCCCATGAATG-AACGGTAGAGTTCTACTGATTTGT-CCATGTGT  191
       | ||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  AATTTTCCCATGAATGAAACGGTAGAGTTCTACTGATTTGTCCCATGTGT  193

seq1  CTTACAGCTAACAATCACAATGCTATTCACGGTCAGA-CCTTCCTGTGGA  240
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTACAGCTAACAATCACAATGCTATTCACGGTCAGACCCTTCCTGTGGA  243

seq1  ATGCTGCATGCTTCCTGATACCAAGAAATGAATTTTAGCCTTGTTCTCT-  289
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGCTGCATGCTTCCTGATACCAAGAAATGAATTTTAGCCTTGTTCTCTC  293

seq1  CCCCACCCCTCACTATCCCTCCTGGTCTCCTCTACCAGTTTCTCTTAGCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTCACTATCCCTCCTGGTCTCCTCTACCAGTTTCTCTTAGCA  343

seq1  TGTTGCCCAGATAACATTTTCAGCTTTCAGGACTTTGCACTCCTGCGGGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCCAGATAACATTTTCAGCTTTCAGGACTTTGCACTCCTGCGGGG  393

seq1  CCCCACAGGAGTTCTTGGGCTCCAGTCTGAGAACCAATGCATTAGGGAGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGGAGTTCTTGGGCTCCAGTCTGAGAACCAATGCATTAGGGAGC  443

seq1  TGGTCCCAGGGCTCCTGGCCATATTGCATTGCAAAACAAGATTACCAGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAGGGCTCCTGGCCATATTGCATTGCAAAACAAGATTACCAGCT  493

seq1  GAGCCGCAGCATGAGGCAAAAGCAGAAAGTGCATCATAAATAAAGAATAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCAGCATGAGGCAAAAGCAGAAAGTGCATCATAAATAAAGAATAG  543

seq1  GCCACTGGGAGGCTTGCTATGCCCCCTAAGAGAGGAGCAGCCTATGAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGGAGGCTTGCTATGCCCCCTAAGAGAGGAGCAGCCTATGAGAA  593

seq1  TAACTTTCTAGGGATCACATTCGGTTGTTTCAAAATTCCTACAAAACGAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCTAGGGATCACATTCGGTTGTTTCAAAATTCCTACAAAACGAA  643

seq1  TTTATTTTTCTTATTACCATCTTTCTTTGCTGTTGATGGGGCCTCAGCAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCTTATTACCATCTTTCTTTGCTGTTGATGGGGCCTCAGCAG  693

seq1  GCAGAGGGATTGTATACATAAATATCTCTGCAATCATGTAGAAACAGGAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGATTGTATACATAAATATCTCTGCAATCATGTAGAAACAGGAA  743

seq1  TCACAAAATGACACACCACACGTCCGGTGTCACAGTAATCAACTGCAGAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATGACACACCACACGTCCGGTGTCACAGTAATCAACTGCAGAA  793

seq1  ACAGCAGCTAATCTACCAAGAAGTGTAACCAGAATAGCCCTAAATAATGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCTAATCTACCAAGAAGTGTAACCAGAATAGCCCTAAATAATGG  843

seq1  TGGGGATAAACCTCCCAAATGCTTTCACAACAGAAATGGTTCCATTGAAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATAAACCTCCCAAATGCTTTCACAACAGAAATGGTTCCATTGAAT  893

seq1  ACATGGTAATGGACCCCTATTAGACATTCAACAGCAATGAATTTATTCAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAATGGACCCCTATTAGACATTCAACAGCAATGAATTTATTCAT  943

seq1  CTACCATGCGTTATCATACGAAAAATTTGAAGCCAAGTGTAGTGGTGAAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGCGTTATCATACGAAAAATTTGAAGCCAAGTGTAGTGGTGAAC  993

seq1  ACCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCAGATCCCTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCAGATCCCTGAATTC  1043