BAC Information

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BAC

Clone NameB6Ng01-350F13
Chromosome10 (Build37)
Map Location 75,536,274 - 75,537,372
singlet/doubletsinglet
Overlap geneSlc5a4b
Upstream geneBcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2
Downstream geneSlc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350F13.bB6Ng01-350F13.g
ACCGA131044GA131045
length1,0871,170
definitionB6Ng01-350F13.b B6Ng01-350F13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatctccttttccagcaccatgcctatcaggatgctgccatac
ttcctgacttgataataatggactgaacctctgaacctataagccagccc
caattaaatgttgtccttttaaagagttgccttggtcatggtgtctcttt
atagcaatggaaaccctaagacagaagttggtaccaggaactggggtatt
gctgtgacaggcctgaccatgcttttgtttggaggaatgtagattttggg
actttggattagaaagcaatggaatgctttaagagggacttaatgggcta
ccctagtaggaatatagaaggcattcattggtgctgaggctgatttgaac
tctggagattgttactatgttttggtgaagcttccttcttcagtgtggct
tgtaggggagaggaaaacatccttcaaaaagtgttagaagccttcatttc
agctaggaggaaaacctcaaagcccactcactcccatagtgacatacttc
ttccaacaaggccacacccactacagcaaggccacacccactacagcaag
gccacaccccactccgacaaggccataccccctaatagtgccactccttg
ggccaagcatattcaaaccaccacagtcagctatcaacatccttgctcag
tcctacctcatcatccaggaaacttctgggttatcttacataaatccatt
cacaggaatgggatgtataatttcagaagtctgcaaggagcctgggacat
gtacagaagtgatacagaagagtgccaagtctgccgaatgttctttttct
gccccttgtgtcagagcagggaaatctgttgggaatccggccccccaaat
catgaatctgtgtgtccgaatgctgaaggtccttgtctccaattggttct
tgatcaatcaataagggccaacagccaatgggctgggctggacaggtata
ctgaaggcaggacctatagatttgtgtgggctagaactgggagaggagga
gagggattgccatgacttggggggagagatggacatgacagctgcagcag
ataagctacagcatgtgaatttcagatagcagcactg
gaattctttgtgttcctgggacttggtgctggccagctggagctaagaaa
ttagtggggactaagagaagaccaacacaaggtgaaatcttctgggaagg
gcttcctgagggcatagagaagctgtgttctagaggcggccaccatcgta
cctcgttggtggttcaccttgtgatgtgtaagagtcacccaggtggtact
ggtttgaaggcatgaagggttcatggagagcagctgaagcttggcactgt
gaggagccaggagaggccaatggtgaaggtgcagccacagtggcagttga
aggcccaggattaaaggggtcatgcaaagaaatagagggttggcaccatg
aagagagtctatgataggccattggtgaaagtgcagcccagttgcagcaa
cagaccccagtgttttggaaatgccaataccatgggatgaccatcaagaa
cagcagcagcagtggagtggagccagccagagcctagaagacaagctgtg
tgtgttgcagacagcagacccaaacccgttggaggagcccagaaaatagt
gagtgaatctcagatattagacattgagttatttacattcttagagtttg
ggtttgctttgtccagattgtgactgtgccctggttcttccctcttgaag
aaggtatttaatttaaatttgatttttacaggagcccacactgaaagact
ttgaacttttcaaagagattttggaatttatgggaggttggatattttaa
agagactgaaattttaatgtgcttgaatttgtaaagactggagaactttt
aaagttatttatgtttttaatgtgagatcttggggatgagtaagaaaagg
gttatggcttaaaaggtatgtgtatgtggatcaagttgacaagggggtca
cttgtgctggctggtttttttgtcaacttgacacacaaattaaaggtatc
taaaaggaggggagccttagtttagaaaaatgcttccataagtccggctg
taaggcatttttcttactttagtatgatgggagagggcacatttccatat
gaatgctgtcatgctgagcttggttgtctatagtacgtcagactggggtc
ttggaagaatggctcaactgatagcagtcacctggctgtcatcttttgtg
gagggtccagtagagcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75536274_75537372
seq2: B6Ng01-350F13.b_43_1129

seq1  GAATTCTCATCTCCTTTTCCAGCACCATGCCTATCAGGATGCTGCCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTCCTTTTCCAGCACCATGCCTATCAGGATGCTGCCATAC  50

seq1  TTCCTGACTTGATAATAATGGACTGAACCTCTGAACCTATAAGCCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACTTGATAATAATGGACTGAACCTCTGAACCTATAAGCCAGCCC  100

seq1  CAATTAAATGTTGTCCTTTTAAAGAGTTGCCTTGGTCATGGTGTCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATGTTGTCCTTTTAAAGAGTTGCCTTGGTCATGGTGTCTCTTT  150

seq1  ATAGCAATGGAAACCCTAAGACAGAAGTTGGTACCAGGAACTGGGGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATGGAAACCCTAAGACAGAAGTTGGTACCAGGAACTGGGGTATT  200

seq1  GCTGTGACAGGCCTGACCATGCTTTTGTTTGGAGGAATGTAGATTTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACAGGCCTGACCATGCTTTTGTTTGGAGGAATGTAGATTTTGGG  250

seq1  ACTTTGGATTAGAAAGCAATGGAATGCTTTAAGAGGGACTTAATGGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGATTAGAAAGCAATGGAATGCTTTAAGAGGGACTTAATGGGCTA  300

seq1  CCCTAGTAGGAATATAGAAGGCATTCATTGGTGCTGAGGCTGATTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTAGGAATATAGAAGGCATTCATTGGTGCTGAGGCTGATTTGAAC  350

seq1  TCTGGAGATTGTTACTATGTTTTGGTGAAGCTTCCTTCTTCAGTGTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATTGTTACTATGTTTTGGTGAAGCTTCCTTCTTCAGTGTGGCT  400

seq1  TGTAGGGGAGAGGAAAACATCCTTCAAAAAGTGTTAGAAGCCTTCATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGAGAGGAAAACATCCTTCAAAAAGTGTTAGAAGCCTTCATTTC  450

seq1  AGCTAGGAGGAAAACCTCAAAGCCCACTCACTCCCATAGTGACATACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGAGGAAAACCTCAAAGCCCACTCACTCCCATAGTGACATACTTC  500

seq1  TTCCAACAAGGCCACACCCACTACAGCAAGGCCACACCCACTACAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAAGGCCACACCCACTACAGCAAGGCCACACCCACTACAGCAAG  550

seq1  GCCACACCCCACTCCGACAAGGCCATACCCCCTAATAGTGCCACTCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCCACTCCGACAAGGCCATACCCCCTAATAGTGCCACTCCTTG  600

seq1  GGCCAAGCATATTCAAACCACCACAGTCAGCTATCAACATCCTTGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCATATTCAAACCACCACAGTCAGCTATCAACATCCTTGCTCAG  650

seq1  TCCTACCTCATCATCCAGGAAACTTCTGGGTTATCTTACATAAATCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTCATCATCCAGGAAACTTCTGGGTTATCTTACATAAATCCATT  700

seq1  CACAGGAATGGGATGTATAATTTCAGAAGTCTGCAAGGAGCCTGGGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATGGGATGTATAATTTCAGAAGTCTGCAAGGAGCCTGGGACAT  750

seq1  GTACAGAAGTGATACAGAAGAGTGCCAAGTCTGCCGAATGTTCTTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAGTGATACAGAAGAGTGCCAAGTCTGCCGAATGTTCTTTTTCT  800

seq1  GCCCCTTGTGTCAGGAGCAGGG-AATCTGTTGGGAATCCGGCCCCCCAAA  849
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  GCCCCTTGTGTCA-GAGCAGGGAAATCTGTTGGGAATCCGGCCCCCCAAA  849

seq1  TCATGAATCTGTGTGTCCGAATGCTGAAGGTCCTTGTCTCCAATTGGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATCTGTGTGTCCGAATGCTGAAGGTCCTTGTCTCCAATTGGTTC  899

seq1  TTGATCAATCAATAAAGGGCCAACAGCCAAT-GGCTGGGCTGGACAGGTA  948
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TTGATCAATCAAT-AAGGGCCAACAGCCAATGGGCTGGGCTGGACAGGTA  948

seq1  TACTGAAGGCAGGACCTATAGATTTGTGTGGGCTAGGAACTGGGAGAAGG  998
      ||||||||||||||||||||||||||||||||||| |||||||||||  |
seq2  TACTGAAGGCAGGACCTATAGATTTGTGTGGGCTA-GAACTGGGAGA--G  995

seq1  AAGGAGAGGGGATTGCCATGACTTGGGGGAGAAGGATGGGACATGACAGC  1048
       |||||| ||||||||||||||||||||| ||  ||| ||||||||||||
seq2  GAGGAGA-GGGATTGCCATGACTTGGGGG-GAGAGAT-GGACATGACAGC  1042

seq1  TGCAGCAGATAAAGCTAACAGCCATGTTGAAATTCAGATAAGCAGCCACT  1098
      |||||||||| ||||| |||| |||| |||| ||||||| ||||| ||||
seq2  TGCAGCAGAT-AAGCT-ACAG-CATG-TGAATTTCAGAT-AGCAG-CACT  1086

seq1  G  1099
      |
seq2  G  1087