BAC Information

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BAC

Clone NameB6Ng01-350L17
Chromosome10 (Build37)
Map Location 55,983,514 - 56,146,724
singlet/doubletdoublet
Overlap geneEG629732, Gja1
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350L17.bB6Ng01-350L17.g
ACCGA131320GA131321
length1,196687
definitionB6Ng01-350L17.b B6Ng01-350L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,983,514 - 55,984,713)(56,146,039 - 56,146,724)
sequence
gaattcatgatgcttctcctatctccatcttctaagtgctgaaattatag
acttgaactaccatacctcgttcacatattgaagtttgaacacaacatac
ctctataaagttcatcatgtttggttgctacttcctaaaattacacaata
atgttccatatttcctcagagattatatttattcttttagagcctatttt
agatttgagtttctaaaatgcaaaataagaaacccatagttcttttctga
aaaggttcttttgtgctaaagagaattgagattgttcacttatacaaagc
tatttggaaatatggttatttattttaagaacaatgaaaggtgtttataa
aatttcacttctaattcactgtagttactatacgtgagaccattcattgt
ttatttgcttttctacttagttaaatatttgctgaagaaaatgagatttt
tgaatcctatttatttatgaattaactaaagtcatcaggcttggtttata
aatttaggaaagaagcgtgattcctaaattaaattatatcattaataatc
ttaacttttgaataaattatattgttttcaaacaaacagaatatgtcagt
gttcggagacaagaaaacgtttgttatatccatgatgtccatatgctcca
ctctaaatatttataaaaattagtaacaatttagagatatcaaataaatt
tttctcaattatgtcagaaaaatgctttagagtttaatatattctcattt
atatttcagcaacatacctccttctgtaaataacaaatgagcgtaagttt
cataatctgaaagctagactggtaccattattcctctgtgtctgtggggg
acttatactaagaccccataacattagaatctgaggatggacaaaccctt
atatatgatattgtggcatttctatataaccctatactcacccttcatgt
atcttaaaacattctgtagtactgtcaaacccagttctaagaaatacttc
cagaaagtaggttatttttactgaatttatttaagatccacaagaaaaaa
ggagtctgtaacaaaattatatgtggtcctggtctcttaagatatatttt
catacataataatttgatgctaattatcttctcagattctgccattgatg
ccatgtgctatttggaagtctaggaagtatatcctgttggaaggaa

gaattcttttggtttggttttgtcgttattgttgctgttgttttgtttgc
tttgctttttgagacaaatctcatgtaaaccaggcaggactcaaactcaa
tgtggagtttaagggggccatacatttctaatcctcctgctatgcccttc
gagggctagaattacaggagtgtgccattaccccttggcacttacaggaa
tactgcatcaagaaaagctactgtttgaaacttgttttcaatgtgtatgg
gaggaggggctaaggaatgactcattagctgaaaatgtctgtgcgtccac
ccaggacttgccagccgagttcagcctccagaatccactaaagagctgga
tgtatctgtactctcagccctcctactgagagatggctggagagaaatac
aaaatcagcgggaggtccacaggacagttagcctggagtattcagctcca
tagaaacaaggaagagccgacctcaccaaggtagaaggtgaaaattcact
cttgaggatcattgtcttaccaggcccaggcacacctctggtccttgcac
tcaggaggaagagacaggggcatctctgtgagttcgaggccagcctagtc
tacagagagaggaaagcattccagaatatccaggaacacaaagaaacact
gtctcaaaaatcgatggggtgggaggtagggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_55983514_55984713
seq2: B6Ng01-350L17.b_50_1245

seq1  GAATTCATGATGCTTCTCCTATCTCCATCTTCTAAGTGCTGAAATTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGCTTCTCCTATCTCCATCTTCTAAGTGCTGAAATTATAG  50

seq1  ACTTGAACTACCATACCTCGTTCACATATTGAAGTTTGAACACAACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTACCATACCTCGTTCACATATTGAAGTTTGAACACAACATAC  100

seq1  CTCTATAAAGTTCATCATGTTTGGTTGCTACTTCCTAAAATTACACAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAAGTTCATCATGTTTGGTTGCTACTTCCTAAAATTACACAATA  150

seq1  ATGTTCCATATTTCCTCAGAGATTATATTTATTCTTTTAGAGCCTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCATATTTCCTCAGAGATTATATTTATTCTTTTAGAGCCTATTTT  200

seq1  AGATTTGAGTTTCTAAAATGCAAAATAAGAAACCCATAGTTCTTTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAGTTTCTAAAATGCAAAATAAGAAACCCATAGTTCTTTTCTGA  250

seq1  AAAGGTTCTTTTGTGCTAAAGAGAATTGAGATTGTTCACTTATACAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCTTTTGTGCTAAAGAGAATTGAGATTGTTCACTTATACAAAGC  300

seq1  TATTTGGAAATATGGTTATTTATTTTAAGAACAATGAAAGGTGTTTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAAATATGGTTATTTATTTTAAGAACAATGAAAGGTGTTTATAA  350

seq1  AATTTCACTTCTAATTCACTGTAGTTACTATACGTGAGACCATTCATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACTTCTAATTCACTGTAGTTACTATACGTGAGACCATTCATTGT  400

seq1  TTATTTGCTTTTCTACTTAGTTAAATATTTGCTGAAGAAAATGAGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCTTTTCTACTTAGTTAAATATTTGCTGAAGAAAATGAGATTTT  450

seq1  TGAATCCTATTTATTTATGAATTAACTAAAGTCATCAGGCTTGGTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTATTTATTTATGAATTAACTAAAGTCATCAGGCTTGGTTTATA  500

seq1  AATTTAGGAAAGAAGCGTGATTCCTAAATTAAATTATATCATTAATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGAAAGAAGCGTGATTCCTAAATTAAATTATATCATTAATAATC  550

seq1  TTAACTTTTGAATAAATTATATTGTTTTCAAACAAACAGAATATGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTGAATAAATTATATTGTTTTCAAACAAACAGAATATGTCAGT  600

seq1  GTTCGGAGACAAGAAAACGTTTGTTATATCCATGATGTCCATATGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGAGACAAGAAAACGTTTGTTATATCCATGATGTCCATATGCTCCA  650

seq1  CTCTAAATATTTATAAAAATTAGTAACAATTTAGAGATATCAAATAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATATTTATAAAAATTAGTAACAATTTAGAGATATCAAATAAATT  700

seq1  TTTCTCAATTATGTCAGAAAAATGCTTTAGAGTTTAATATATTCTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATTATGTCAGAAAAATGCTTTAGAGTTTAATATATTCTCATTT  750

seq1  ATATTTCAGCAACATACCTCCTTCTGTAAATAACAAATGAGCGTAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGCAACATACCTCCTTCTGTAAATAACAAATGAGCGTAAGTTT  800

seq1  CATAATCTGAAAGCTAGACTGGTACCATTATTCCTCTGTGTCTGTGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTGAAAGCTAGACTGGTACCATTATTCCTCTGTGTCTGTGGGGG  850

seq1  ACTTATACTAAGACCCCATAAACATTAGAATCTGAGGATGGACAAACCCT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTTATACTAAGACCCCAT-AACATTAGAATCTGAGGATGGACAAACCCT  899

seq1  TATATATGATATTGTGGCATTTCTATATAA-CCTATACTCACCCTTCATG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATATATGATATTGTGGCATTTCTATATAACCCTATACTCACCCTTCATG  949

seq1  TATCTTAAAACATTCTGTAGTACTGTCAAAACCCAGTTCTAAGAAATAC-  998
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TATCTTAAAACATTCTGTAGTACTGTC-AAACCCAGTTCTAAGAAATACT  998

seq1  TCCAGAAAGTAGGT--ATATTACTGAA-TTATTTAAGGAATCACAAGAAA  1045
      ||||||||||||||   | |||||||| |||||||| ||  |||||||||
seq2  TCCAGAAAGTAGGTTATTTTTACTGAATTTATTTAA-GATCCACAAGAAA  1047

seq1  AA--GAGTCTGT-ACAAA--TATATGTGGTCCCTTGGTTCTCTTAAGATA  1090
      ||  |||||||| |||||  ||||||||||||  ||| ||||||||||||
seq2  AAAGGAGTCTGTAACAAAATTATATGTGGTCC--TGG-TCTCTTAAGATA  1094

seq1  TATTTTCATTACATAATAATTTGAATGCTAATTATC-TCTCAGAATTTCT  1139
      |||||||| |||||||||||||| |||||||||||| |||||||  ||||
seq2  TATTTTCA-TACATAATAATTTG-ATGCTAATTATCTTCTCAGA--TTCT  1140

seq1  GGCATTTGATGCATGGTGCCTATTTGGGGAGGCTTAGGAAGTATATCCTT  1189
      | || |||||||   ||| ||||||  ||| |  |||||||||||||| |
seq2  GCCA-TTGATGCCATGTG-CTATTT--GGAAGTCTAGGAAGTATATCC-T  1185

seq1  GTTGGAAGGAA  1200
      |||||||||||
seq2  GTTGGAAGGAA  1196


seq1: chr10_56146039_56146724
seq2: B6Ng01-350L17.g_68_754 (reverse)

seq1  CCCACCCCCTACCTCCCA-CCCATCGATTTTTGAGACAGTGTTTCTTTGT  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCACCCCCTACCTCCCACCCCATCGATTTTTGAGACAGTGTTTCTTTGT  50

seq1  GTTCCTGGATATTCTGGAATGCTTTCCTCTCTCTGTAGACTAGGCTGGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGATATTCTGGAATGCTTTCCTCTCTCTGTAGACTAGGCTGGCC  100

seq1  TCGAACTCACAGAGATGCCCCTGTCTCTTCCTCCTGAGTGCAAGGACCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCACAGAGATGCCCCTGTCTCTTCCTCCTGAGTGCAAGGACCAG  150

seq1  AGGTGTGCCTGGGCCTGGTAAGACAATGATCCTCAAGAGTGAATTTTCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCCTGGGCCTGGTAAGACAATGATCCTCAAGAGTGAATTTTCAC  200

seq1  CTTCTACCTTGGTGAGGTCGGCTCTTCCTTGTTTCTATGGAGCTGAATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCTTGGTGAGGTCGGCTCTTCCTTGTTTCTATGGAGCTGAATAC  250

seq1  TCCAGGCTAACTGTCCTGTGGACCTCCCGCTGATTTTGTATTTCTCTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTAACTGTCCTGTGGACCTCCCGCTGATTTTGTATTTCTCTCCA  300

seq1  GCCATCTCTCAGTAGGAGGGCTGAGAGTACAGATACATCCAGCTCTTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCAGTAGGAGGGCTGAGAGTACAGATACATCCAGCTCTTTAG  350

seq1  TGGATTCTGGAGGCTGAACTCGGCTGGCAAGTCCTGGGTGGACGCACAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGGAGGCTGAACTCGGCTGGCAAGTCCTGGGTGGACGCACAGA  400

seq1  CATTTTCAGCTAATGAGTCATTCCTTAGCCCCTCCTCCCATACACATTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGCTAATGAGTCATTCCTTAGCCCCTCCTCCCATACACATTGA  450

seq1  AAACAAGTTTCAAACAGTAGCTTTTCTTGATGCAGTATTCCTGTAAGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTTCAAACAGTAGCTTTTCTTGATGCAGTATTCCTGTAAGTGC  500

seq1  CAAGGGGTAATGGCACACTCCTGTAATTCTAGCCCTCGAAGGGCATAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTAATGGCACACTCCTGTAATTCTAGCCCTCGAAGGGCATAGCA  550

seq1  GGAGGATTAGAAATGTATGGCCCCCTTAAACTCCACATTGAGTTTGAGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTAGAAATGTATGGCCCCCTTAAACTCCACATTGAGTTTGAGTC  600

seq1  CTGCCTGGTTTACATGAGATTTGTCTCAAAAAGCAAAGCAAACAAAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGTTTACATGAGATTTGTCTCAAAAAGCAAAGCAAACAAAACAA  650

seq1  CAGCAACAATAACGACAAAACCAAACCAAAAGAATTC  686
      |||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAATAACGACAAAACCAAACCAAAAGAATTC  687


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