BAC Information

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BAC

Clone NameMSMg01-046I03
Chromosome10 (Build37)
Map Location 57,166,241 - 57,166,714
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046I03.T7 (MSMg01no046_i03.b1)MSMg01-046I03.TJ (MSMg01no046_i03.g1)
ACCAG276868AG276869
length703704
length of high quality
(start - end)		578 (45 - 622)477 (74 - 550)
definitionCHROMAT_FILE: MSMg01no046_i03.b1 PHD_FILE: MSMg01no046_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:41 2005CHROMAT_FILE: MSMg01no046_i03.g1 PHD_FILE: MSMg01no046_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATTGTCACAAACCAGTATGCACAGTTCTGAGTCCTATGCAGCTC
CCAAAGGAGAATTGTCAACCTCAGATTCAGCAAGGCCTCTACAAGAATTA
TGCCAATTGTAACACCACAATTTGTGGCTCTTAGGCTATATTAGGAACTG
AAGGTCACCCTCCTCATCCCTATTGTCTCCATGGCATGAGGAACCAAGGG
GACTCTGCATTTGCAGCAAGGGTGAAAAACTGGAGAATAGCAGTTGCTCT
TTCTGCATCGGTGGGAGGAAGATCTTCGTCTGAATCTTAGATATCCAGTT
GATGGTAGTGAACTACAACTGGCTTGCTTAAAGCAGCTTCAATCTGAGAC
TTAACAAAACTGGTTAATCTATTAAAGGCCCAAGGGCCAAAAGACAAAAG
CAGCAAAATACCCACGAAAGGTCCCAAAAGGCTGGGAAGTAAGGTAGTGA
GCCAAGGAGAAGTAGAAAACCAATGTTTATACCAATATTCTTGTTTCCCT
CTGTTGCATTTACTCTCTTGTAAACTACTTCTAATTTGGCTATGATATCT
TGAACTAAGCCAGTCTTACCAGAATAAAAACAACATTCTTCTAATATCTG
AAATGTCTGTCTTTGTAGCCTTATATTTGTTATATCCTGGCTTATTGTTG
AGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCGGTGGCGGGGGGGGGGGACTAT
AAGGAAAGCTAAGAATTCTTATGCAGTATTTTCAATCATGAATATAATAG
AAATGCTGAATATATACTGTACATGTACGGACATGTTTTAAATGTTTTAA
GTCCAAGGAAGTTTTGGGATGCTCTGGAGTTTTGTTTTTATAAATTACTA
TTATCATTCCTGTGGTTTAAAGGAAGAAACTAAGACTTAGTGGGTACATA
TTACACAAGAGAAATGAAGACAAAACTAGGCCTAGGGTTTCCCTGAGTGG
AGAATCCTAAACACTTTTATGTATTTACATAAAATACATAATTTGCCTAT
ATACAAACTCTGAAGGTCTCAATTTTTACAATATTTTTTAATTAGCTATG
TGTGTAAGAGGTATATGCATGTGAGTATGGATGACCTAGAGGCCAAAAGT
GCCAGATACCCTGATATTGGAGTTGTAAGCAGCCATGAATAGAGTAGTAT
TAGGTGCTAGAAACCAAAATAGGGTCCTCTACAAGAGCAATACTGTTCTT
AAACACTGAGTCATCTTTCTATCCTTATCCCTTTTCCAGCGAATGTTTTC
TGATGGAAACTATCAGGAGCTTTAAAATACTTCGGGATGCCCTAACACAC
CCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_i03.g1 MSMg01no046_i03.g1 CHROMAT_FILE:
MSMg01no046_i03.g1 PHD_FILE: MSMg01no046_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:41 2005
         (477 letters)



>mm_chr10_57166037_57166914
          Length = 878

 Score =  768 bits (397), Expect = 0.0
 Identities = 447/475 (94%), Gaps = 21/475 (4%)
 Strand = Plus / Plus

                                                                       
Query: 23  actataaggaaagctaagaattcttatgcagtattttcaatcatgaatataatagaaatg 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 actataaggaaagctaagaattcttatgcagtattttcaatcatgaatataatagaaatg 264

                                                                       
Query: 83  ctgaatatatactgtacatgtacggacatgttttaaatgtttt----------------- 125
           |||||||||||||||||||||| ||||||||||||||||||||                 
Sbjct: 265 ctgaatatatactgtacatgtaaggacatgttttaaatgtttttacacagtccattcctt 324

                                                                       
Query: 126 -aagtccaaggaagttttgggatgctctggagttttgtttttataaattactattatcat 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagtccaaggaagttttgggatgctctggagttttgtttttataaattactattatcat 384

                                                                       
Query: 185 tcctgtggtttaaaggaagaaactaag-acttagtgggtacatattacacaagagaaatg 243
           ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 385 tcctgtggtttaaaggaagaaactaagga-ttagtggatacatattacacaagagaaatg 443

                                                                       
Query: 244 aagacaaaactaggcctagggtttccctgagtggagaatcctaaacacttttatgtattt 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 444 aagacaaaactaggcctagggtttccctgagttgagaatcctaaacacttttatgcattt 503

                                                                       
Query: 304 acataaaatacataatttgcctatatacaaactctgaaggtctcaatttttacaatattt 363
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 504 acataaaatacataatttgcctatatacaaacgctgaagctctcaatttttacaatattt 563

                                                                       
Query: 364 ttt-aattagctatgtgtgtaagaggtatatgcatgtgagtatggatgacctagaggcca 422
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttaattagctatgtgtgtaagaggtatatgcatgtgagtatggatgacctagaggcca 623

                                                                  
Query: 423 aaagtgccagataccctgatattggagttgtaagcagccatgaatagagtagtat 477
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 aaagtgccagataccctgatattggagttgtaagcagccacgaatagagtagtat 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space:   405356
Effective search space used:   405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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