BAC Information

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BAC

Clone NameMSMg01-048O04
Chromosome10 (Build37)
Map Location 65,349,070 - 65,349,846
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048O04.T7 (MSMg01no048_o04.b1)MSMg01-048O04.TJ (MSMg01no048_o04.g1)
ACCAG278531AG278532
length1,2201,180
length of high quality
(start - end)		777 (83 - 859)701 (84 - 784)
definitionCHROMAT_FILE: MSMg01no048_o04.b1 PHD_FILE: MSMg01no048_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:18 2005CHROMAT_FILE: MSMg01no048_o04.g1 PHD_FILE: MSMg01no048_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTTTTTNNNNNNCCATTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCTGAAGCAACTTGTTTACACTTGACATGATATCTGATAAACT
AGAATTCATAATTGGATTGATTTGCTTATATAATTAATATATATTTTATT
GAAAAATTCTCTCGAGACACATAAGCAGGGTGGAAGATAATACAAAAAAA
TATTGAAAGTGTTTGTAACAAAAGAACTTAAGTATGTGAGCCAAATAATA
TAGTACTCTTTTAACTATATTATAGGCTTAGTAGACTTATACTAATTTAT
AAGAACTTATTAAAAGAAAAATTTACTTAGTAAATAAGAGTAACACTAAA
AATGTTGACTGAAAACTGGCATAAGCAAAGATATTTTCCTCAGAAGTCTA
TTTTGCTGGGTTGATGCAAAATCACAAAAGCCCCCAAATCTCTTTTCAGA
ATTCATGTGTATGTTTATTTAGGGATGCAAAAAAACCTACTAATCATGTT
GTTTAGAGAAACCAAGAATAGAATGACTGCTGAAAGCACACGCCATTTCT
TCTGATCTGCCTGGTGATATCTAACATCCCTAGATTATTGGCTTAAACCG
ACACCAAGAATACTCCATTTCCTGAAATCCTGAATGCATGTCAGGTGGGA
TGGGCCTCCGAGGGCTTCTCTGGACAGCTTTGTTACCTCAGCAGCCTACT
TCATTGCCCTTTTTGTGCATCACTCCTGCCTAGTCATTCCCAAACATTTC
ATAACTGGAAACAGTAAAGAGATTTTTATATGGAGAANATGGTGTAGCTG
ATGGTGTCAGAGAGGTTAATTGTTCGTTTTCTTTCCCATTTGTGTTCTTT
TATTTCCAGTGTAAAAAGAGAAAGGCTGTTTAAACCATTGACACAAGTTA
GAATTCATATTACCAGTTGTCACTTTTCTACAAGAAAAACACTGATCGCT
GCCTTTCTCCTATTTAACATATTTATTACCACACTCTATGAGTGCTTATC
TTTGTATCTCTAGAGTTCATTAAAACAAACATGTGTTTTCTTTTTATATT
AAATGAAAATTCCCATTTTAATTTTAAATTTTAGGGCCCCCTATTTTGTT
AGTTAAAAAAAATCTTTTCTGAAAAAAACGGGGTTTGTCTGAAAATTTTT
TTCCCCCCCAAAAAAAACCCCCCCAACAAATTGGAAAGGTTCCTTTCTTA
AATTAAAAAAAATTGGGGGG

NTATTTTTTTNNTAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTGATTAGCTCTATATCCCATTTT
TGAATTGGGTTATTTGATTTTTGGTGTCTAATTTTTGAGCTCTCAGTATA
TTTTAGATATTGGTCATCTATAAGATGTAGTATTAGTGAATATCTTTTCC
TAATATGTAGATTGATGTTTTGGCTTACAGAAGCTTTTCAATTTCAAGAG
GTCCCATTTGTCAATTGTTGATCTTAGAGCCCAAGCACTGGTGTTCTGTT
CAGGAAATTTTCCTCTGCACCAATGTGTTCAAGGCAACTTCCTACTTTCT
CTTCTTTTAGATTCAGTGTATGTGGTTTTATGTTGAAGTGTTTCATCCAC
TTGAACTTGAGCGTTTTACAGGGAGATAAAAATGGATCAATTTACATTCT
TCTACATGCAGAGTGACAGTTAGACCAGCACCATTTGTTGGTGATGCTTT
TTTTTTTTCTTCACTGAATAGTTTTGGCTTCTTTGTCAAAGATCAAGTGC
CCATAGGTGTGTGGGTTTATTTCTGGATTTTCAATTCTATTCTACTGAAC
AAATTGTCTGTTTCTGTACCAATACCATGTGCTTTTTTTTTTTTTAATCA
CTATCGCTTTGTAGTACAGCTAGAGGTCAGGGATAGTGATTCTTTGAGAA
ATTCTTTTGTTGTTGAGAACAGTTTTTGAATTCTTGCGTTTTTGGCTTTT
CAATATGAAGTTGAGAATTTCTCTTTCCATGTCTGTGAAGAATTGTGTTG
GAGTTTTGATAGAGATTGCATTGAATCTGTAGATTGCTTTTAGTAAGTTG
GCCATTTTTTCATGGTACTCTACCATACATGACCCTTGGGAGACCTTTCC
TTATCCTGAGGCTTTCTTTGATTCCTTCTCTCAAAATCCGTATTTCTTTG
TGCTTGGTTGGTTAAAGTTTCCCCCCTTATTATTTCCTTTTTTGATCCCC
CTTGTTCTGTTGGTAATTTCTTTCCATTTCTTCTTCATTTTTTTCTTTTG
TTTTTTCATGATTTTTTGTTTTTTTTTCCTTCTTCTCTTCCCCTTCCTCT
TTTCTTTTTATTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTGCTTTC
TTTTCTTTTTTTCTTCTCTACCTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_o04.b1 MSMg01no048_o04.b1 CHROMAT_FILE:
MSMg01no048_o04.b1 PHD_FILE: MSMg01no048_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:18 2005
         (777 letters)



>mm_chr10_65348794_65349970
          Length = 1177

 Score = 1481 bits (766), Expect = 0.0
 Identities = 774/777 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    catgatatctgataaactagaattcataattggattgatttgcttatataattaatatat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 catgatatctgataaactagaattcataattggattgatttgcttatataattaatatat 994

                                                                        
Query: 61   attttattgaaaaattctctcgagacacataagcagggtggaagataatacaaaaaaata 120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  attttgttgaaaaattctctcgagacacataagcagggtggaagataatacaaaaaaata 934

                                                                        
Query: 121  ttgaaagtgtttgtaacaaaagaacttaagtatgtgagccaaataatatagtactctttt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  ttgaaagtgtttgtaacaaaagaacttaagtatgtgagccaaataatatagtactctttt 874

                                                                        
Query: 181  aactatattataggcttagtagacttatactaatttataagaacttattaaaagaaaaat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  aactatattataggcttagtagacttatactaatttataagaacttattaaaagaaaaat 814

                                                                        
Query: 241  ttacttagtaaataagagtaacactaaaaatgttgactgaaaactggcataagcaaagat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  ttacttagtaaataagagtaacactaaaaatgttgactgaaaactggcataagcaaagat 754

                                                                        
Query: 301  attttcctcagaagtctattttgctgggttgatgcaaaatcacaaaagcccccaaatctc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  attttcctcagaagtctattttgctgggttgatgcaaaatcacaaaagcccccaaatctc 694

                                                                        
Query: 361  ttttcagaattcatgtgtatgtttatttagggatgcaaaaaaacctactaatcatgttgt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693  ttttcagaattcatgtgtatgtttatttagggatgcaaaaaaacctactaatcatgttgt 634

                                                                        
Query: 421  ttagagaaaccaagaatagaatgactgctgaaagcacacgccatttcttctgatctgcct 480
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 633  ttagagaaaccaagaatagaatgactgctgaaagcacatgccatttcttctgatctgcct 574

                                                                        
Query: 481  ggtgatatctaacatccctagattattggcttaaaccgacaccaagaatactccatttcc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  ggtgatatctaacatccctagattattggcttaaaccgacaccaagaatactccatttcc 514

                                                                        
Query: 541  tgaaatcctgaatgcatgtcaggtgggatgggcctccgagggcttctctggacagctttg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513  tgaaatcctgaatgcatgtcaggtgggatgggcctccgagggcttctctggacagctttg 454

                                                                        
Query: 601  ttacctcagcagcctacttcattgccctttttgtgcatcactcctgcctagtcattccca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453  ttacctcagcagcctacttcattgccctttttgtgcatcactcctgcctagtcattccca 394

                                                                        
Query: 661  aacatttcataactggaaacagtaaagagatttttatatggagaanatggtgtagctgat 720
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 393  aacatttcataactggaaacagtaaagagatttttatatggagaaaatggtgtagctgat 334

                                                                     
Query: 721  ggtgtcagagaggttaattgttcgttttctttcccatttgtgttcttttatttccag 777
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333  ggtgtcagagaggttaattgttcgttttctttcccatttgtgttcttttatttccag 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1177
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1167
Effective search space:   895089
Effective search space used:   895089
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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