Query= MSMg01no048_p23.b1 MSMg01no048_p23.b1 CHROMAT_FILE:
MSMg01no048_p23.b1 PHD_FILE: MSMg01no048_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:32 2005
(665 letters)
>mm_chr10_40956140_40957210
Length = 1071
Score = 1239 bits (641), Expect = 0.0
Identities = 661/671 (98%), Gaps = 6/671 (0%)
Strand = Plus / Plus
Query: 1 ggacagggtaatagcatccttaagactgacaactgctaaccaaccccaatgaagaagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacagggtaatagcatccttaagactgacaactgctaaccaaccccaatgaagaagtac 260
Query: 61 cacacagtgttacatggatagagctgtaagatggcacaccacaacttttactcagcactc 120
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacagtgttagatggatagagttgtaagatggcacaccacaacttttactcagcactc 320
Query: 121 ttcatgcaagatgagatgaagacggccatctgattaaatctgaagaagtattttatagac 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgcaagatgagatgaagacagccatctgattaaatctgaagaagtattttatagac 380
Query: 181 ttcttaatatgataggcgtatttagctaataaaaaggatgcacttagtgaccgtatacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttaatatgataggcgtatttagctaataaaaaggatgcacttagtgaccgtatacta 440
Query: 241 ttgcatgaccagaatggtgaccatatggccacgtgatatagttaagg------tgcttct 294
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 441 ttgcatgaccagaatggtgaccatatggccgcgtgatatagttaagggtgcggtgcttct 500
Query: 295 ggcggatagggagcaatgctgagaacagctacagtaagtaagtagtcttacacttaatgc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcggatagggagcaatgctgagaacagctacagtaagtaagtagtcttacacttaatgc 560
Query: 355 tgagcagagactacagacaccgagcggtgatcccagtggtctcaatcactggcaaaaatc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagcagagactacagacaccgagcggtgatcccagtggtctcaatcactggcaaaaatc 620
Query: 415 cagccaacctgtgaccactaccacagacatggccacaagcttcggatacactttaatgtc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagccaacctgtgaccactaccacagacatggccacaagcttcggatacactttaatgtc 680
Query: 475 aactggaacacacagggcatggtgggctgaggagggtcagcatataagatttcagtgaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactggaacacacagggcatggtgggctgaggagggtcagcatataagatttcagtgaag 740
Query: 535 cagatctccgtgcaaggtgagaaacaattgtgcaaacggtagtgtcaacaaccagctcct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatctccgtgcaaggtgagaaacaattgtgcaaacggtagtgtcaacaaccagctcct 800
Query: 595 tacagggggcacattctaaccacaaacctagacttgacaaacataggaaagatggcgact 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacagggggcacattctaaccacaaacctagacttgacaaacataggaaagatggcgact 860
Query: 655 ctggatagaca 665
|||||||||||
Sbjct: 861 ctggatagaca 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1071
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1061
Effective search space: 694955
Effective search space used: 694955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_p23.g1 MSMg01no048_p23.g1 CHROMAT_FILE:
MSMg01no048_p23.g1 PHD_FILE: MSMg01no048_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:32 2005
(664 letters)
>mm_chr10_40974569_40975631
Length = 1063
Score = 1075 bits (556), Expect = 0.0
Identities = 577/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 1 tagtgattgctcgcagcttgtttgctggtggctcccgaaaaggatgcattccttatttat 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 783 tagtgattgctcgcagcttgtttgctggtagcttccgaaaaggatgcattccttatttat 724
Query: 61 atgtaaaggaaccaataccatgtatttccagcatttgattctcaacatagctaactatgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 723 atgtaaaggaaccaataccatgtatttccagcatttgattctcaacatagttaactatgg 664
Query: 121 tggtgggatgaggaaacccgaatcaaacactgtccacgtttgcaagaagccttctgctat 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 663 tggtgggatgaggaaacccgaatcaaacactgtctacgtttgcaagaagccttctgctat 604
Query: 181 cgtttgcagggtttgcatttcagggaatcttaaggtacagggagaagacaaaactgtgga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 603 cgtttgcagggtttgcatttcagggaatcttaaggtacatggagaagacaaaactgtgga 544
Query: 241 aggctttactagggaggcgcctgcagttgtgcaggttacagagactggagaaagataggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aggctttactagggaggcgcctgcagttgtgcaggttacagagactggagaaagataggg 484
Query: 301 gcttgaaggaaagccaaggcactctggtagaacacagagagggtgcccaagagggacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcttgaaggaaagccaaggcactctggtagaacacagagagggtgcccaagagggacatg 424
Query: 361 ggcaccttgcgatgcctccatcccaagctttctttgagtgtggtgactgcctgtctcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggcaccttgcgatgcctccatcccaagctttctttgagtgtggtgactgcctgtctcagt 364
Query: 421 tattcccatctaacagagcaagagagcagaagtatctgatgtcagacatcttcccttcta 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 363 tattcccatctaacagagcaagagagcagaagtatccgatgtcagacatcttcccttcta 304
Query: 481 ttgctgtagctcttagaatctacagatatatattatgcaatccccgcccctttaaaaata 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttgctgtagctcttagaat-tacagatatatattatgcaatccccgcccctttaaaaata 245
Query: 541 gaaaacagggttggggtgtggcttagtcttagtgcatgtgctca 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaaaacagggttggggtgtggcttagtcttagtgcatgtgctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
