BAC Information

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BAC

Clone NameMSMg01-051J02
Chromosome10 (Build37)
Map Location 92,019,227 - 92,019,460
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203, LOC216229
Downstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051J02.T7 (MSMg01no051_j02.b1)MSMg01-051J02.TJ (MSMg01no051_j02.g1)
ACCAG280288AG280289
length1,325776
length of high quality
(start - end)
116 (122 - 237)234 (133 - 366)
definitionCHROMAT_FILE: MSMg01no051_j02.b1 PHD_FILE: MSMg01no051_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:27 2005CHROMAT_FILE: MSMg01no051_j02.g1 PHD_FILE: MSMg01no051_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCGTGCTATAGACTACTATAGGGAGAGGATCCGCGGAATTCTTTCTTT
CTACTTCCATTTGCAATTTTGCTACTGTTATATCTGCTGTTGTCGATACT
TTGAGGTGACCCCACCCCCCGGGTCATTTGAACCCTAAAGGGATCGCAAC
CCACAGGTTGAGACCCGTTGCTCTGTGGTTCTCAGAAGCATTATCACCTC
AAGTATAACTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTTCCCTT
CTTTTCTTTCACTTTCTCTTTTCTCTTTCTTATATCTTTCTCTTTTTTTG
TTTTTCTTTTCCTTTTTTTCTCCTTCCTCTTTTTTCTTCCTTCTTTCTTT
TCTCCTCCTTCTTTTTTCTTCTTCTACATACTCCTTTTTTTTTTTTTCTC
ACTTTTACCTATTCTTCTTATTTCTTTTTATTTTATTCCCTCCCTTTTTT
TTTTTTTTCCCCTTTTCTTTTTCTCTCTTTCTCCTCTATTTAAAAATTTC
TCTCTCTTTTCTCTCTTTTTTTTTTTTTTTTCTTCTTTTTTTCTCCCCTC
TCTTCTTCTTTTCTTTTTTTTTTTTTCTTTCTTCTTTTTCTTTTCCTCTC
TTTTTTCTTCTCTTACTTTCTTCTTCCCTTCTTCTTTTTCTTTTTTCTTT
TCCCCTTTTTTTCTCTTTTTTTTTTTTTTACCTTTTTCTCTTTCTTTTTT
CTTCTTTTTCCTGTTTTTTTTTTTTACTTTTTTTTTTCTTCCCTTTTTTC
TTTTCCTTTCCTCTTTCTTCTCTCTTTCTCTCTTTTTTTTTTTCCTCTCT
CTCTCTTTTTTTTTTCCTTTTTCTTTATCCCTCTTCTTTTTTCATTCTTC
TTTTTTTTCTTTTTTCTCTTTTTTCTCTTCTCTTCTTTCTTTTTCTTTTT
CTTTATTCTCTCCTTTTCTTTTTTCTCTTTCTTTTTCTTTTTTTTTTCTC
TCCTCTCTTTTTTCTCTTCTTCTTTTTCTCCTTTCCTTTTTTTTTTTTTC
TCTTTTCCTCATCTTCTCTTCTCTTTTTTTCCTCCTTTTATTTTTTTTTT
TTTTTCTTTACTTTCCTTTTTTTTTTTCTCTTCTTTTTTCCCTTCTTTCC
TTTTCCTTTTCTTCTTTTTTTCTCCTCTTTTTTCTTTTTCTTCTTTTCAT
CTTTTTTTTTCCTTTCTTTTTCTTCCTCTTTCTTTTCTTTCATTCTTTTT
TCCTCTCATCCTATTCCTTTATTCCCCTTTCTTCTTCTTTTTTTTNCCCT
CTTTTTTTTTTCCCCTATTTTCTTCTTCTCCTCTTCTTCTCTCTTTTTTC
TCCTTCCTCTGTTCCTTCTTCTTTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCNNNNTTTCC
CCCTTTCTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTGTTTTTCTGCTTG
CTTAAATCCTCTGACCGTCGGCTTTCACACAAAATTAATTAAGGATTTTC
TAAATGGAGAACAGGCCATGAAAGACAGAAGCAGTTCGAGATTTGCAGTC
TTTCTTTCAGACAGTGCAAAATACACAGTGTACCAAGCCACTCCAGCCTT
TCCTGGAAAAGAAAAATTTAGAGGCAAACACCACCTTGTCTGAAACCCAA
CAGTTCTTTCAAATAAACAGATGACGGCTGCTGATTAAATACCTTTTTCA
AACATTGCCCAATTATTCCAACTCACACAGGTTCTACATGGTGTTAAATC
TGATTTCCTTTTTTTGCACATTGTTCCCCCCTATACGTTCTTTTTTTTTT
GATCCCCCCTACCCCCCCCCTCCCTTTTCTTTTTTTGTTCTTTTCTACTA
TTTTTCCTTTTTTTTACTCTTTATCCCGCTTTTTTTTTATTCTTCATTTT
TTTTCTCCTCTCTTTTCTTTTTTTCACCCCCCTTTCCTTTTCTCCCTTTC
TTTCAATTTTTTAACTCTATTCTCATCCCCACCTTTTTTTCTCCCTTTTC
ACACTTTCTTCTCCCCCCTAATTTCCCCCCGCTTCCCCCCTTCCTCCTCC
CTTCCCCCTCCTCTTTTTCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_j02.g1 MSMg01no051_j02.g1 CHROMAT_FILE:
MSMg01no051_j02.g1 PHD_FILE: MSMg01no051_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:27 2005
         (234 letters)



>mm_chr10_92019027_92019660
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtgtttttctgcttgcttaaatcctctgaccgtcggctttcacacaaaattaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtgtttttctgcttgcttaaatcctctgaccgtcggctttcacacaaaattaattaa 260

                                                                       
Query: 61  ggattttctaaatggagaacaggccatgaaagacagaagcagttcgagatttgcagtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattttctaaatggagaacaggccatgaaagacagaagcagttcgagatttgcagtctt 320

                                                                       
Query: 121 tctttcagacagtgcaaaatacacagtgtaccaagccactccagcctttcctggaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttcagacagtgcaaaatacacagtgtaccaagccactccagcctttcctggaaaaga 380

                                                                 
Query: 181 aaaatttagaggcaaacaccaccttgtctgaaacccaacagttctttcaaataa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatttagaggcaaacaccaccttgtctgaaacccaacagttctttcaaataa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)