BAC Information

Click to search

BAC

Clone NameMSMg01-052C01
Chromosome10 (Build37)
Map Location 82,473,309 - 82,645,511
singlet/doubletdoublet
Overlap geneChst11
Upstream geneLOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052C01.T7 (MSMg01no052_c01.b1)MSMg01-052C01.TJ (MSMg01no052_c01.g1)
ACCAG280697AG280698
length714707
length of high quality
(start - end)
453 (42 - 494)207 (72 - 278)
definitionCHROMAT_FILE: MSMg01no052_c01.b1 PHD_FILE: MSMg01no052_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:39 2005CHROMAT_FILE: MSMg01no052_c01.g1 PHD_FILE: MSMg01no052_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,473,309 - 82,473,757)(82,645,305 - 82,645,511)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGAGCCGCGGAATT
CACTATGTATCCCAGGCTGGTCTAGAATTTGCAGTCTACAACCACAGCTA
GAATCTTCCTCAGTGGCTAGGTGGACAGACCTGTACCACCATGCCCAGCA
ACCCTTTGATTGATGCCAGAGCCTGTATCATGAAGAGCAGGGTCCTGCAT
GGGTAGTCTCTGTCTGCTTAGAAATGGTCTTATCTTTACTGTATGACTCG
GAGTCTTCTTTTGACATTTTCAATATATTGTTACCTTTCATTTAATTGTG
AGCGTGTGTGCGTGCATGTGTGTGCGTTTGTCTGTTCAGGTGACAACTTT
CAGGAGTTGGTTATGTCTTTCCACTGTGTTTGTCCCAGGGAATGAATTTA
AGGGGTCAGATTTGGCCCCTTTACCTGCAGTGCCTCCTCTCTGGCCCTGG
TTTTTATGTTCTTTGTACGTTATTCTTTTATCATTATTTTAGTATGTTGG
AGGCTTTTTTTGTGACAGGTTCAGACTGACCTGGAACTCAGTATGTCGCT
CAGGCCTTGGTCCTTCCAATGCTATAACTACAGATGTGTGTGCGCCTGTG
CTCAGCTGAAAACAGCCTAATCTTGTTCTATTTGCAGTTCCTTAACCTAT
CATTTGCCTTGACTGCTTGTAGGTTGTGTTGAACAACTGCCCCGCACTGT
GCTTGCCTGACTTA
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTAGCTGAGGAATGTAAGCGACTGCGTT
GATTTTTAGGTCACAGCTGAGGATACACAGCGGTGCACAACAGCCACACA
GACAACCTGGAGCCCAGGGATGAGTAAGACACCCACAAGCTGAGGACATC
AGAGGTGTAAATACCGTGTAACTGGTAGATTTTTGAGCTACTGCGTATGT
GGGGGTGGAGGGGGTTGTTGCTCATAACCCAGGTGGAACATTTCTCTGGG
CCCACCTAATCCCAACTCAGCCTTCTATTCCTAGGACGCAGCACTGAGGA
GGACTTTCCTTGACTCTCTAACCAGCAGCCCCCTGGAGGTACTGGGATGA
ATCCCATGTCAGAGTATGCTATGAGCCTTCCTAGGGGCTTACTGCTATCT
ATGTCTGTGGTTCTAGGCCTCCTCTGTGCATCGAGGATAATACCCCCTCT
CCTTTGCCCTCCCTACTATGAGTTCCTTTGTCTGCAGCTGTGCGTGCGTG
CCTGTGCATCCTAAAAAAATCCGATGCCACCCCCTCGCTACCTCAGCTGG
CGTTTCCCCCCTCTCTTTTAAAGACCGCTTTCTCCGTGCACTTAATTCTT
CTCCGTTTGTCTCACCCTCTACTGACTCCCACCCCATTCCGGATGGCTCG
GACTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_c01.b1 MSMg01no052_c01.b1 CHROMAT_FILE:
MSMg01no052_c01.b1 PHD_FILE: MSMg01no052_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:39 2005
         (453 letters)



>mm_chr10_82473105_82473957
          Length = 853

 Score =  830 bits (429), Expect = 0.0
 Identities = 444/449 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatgtatcccaggctggtctagaatttgcagtctacaaccacagctagaatc 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatgtagctcaggctggtctagaatttgcagtctacaaccacagctagaatc 264

                                                                       
Query: 65  ttcctcagtggctaggtggacagacctgtaccaccatgcccagcaaccctttgattgatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctcagtggctaggtggacagacctgtaccaccatgcccagcaaccctttgattgatg 324

                                                                       
Query: 125 ccagagcctgtatcatgaagagcagggtcctgcatgggtagtctctgtctgcttagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagagcctgtatcatgaagagcagggtcctgcatgggtagtctctgtctgcttagaaat 384

                                                                       
Query: 185 ggtcttatctttactgtatgactcggagtcttcttttgacattttcaatatattgttacc 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcttatctttactgtatgactcagagtcttcttttgacattttcaatatattgttacc 444

                                                                       
Query: 245 tttcatttaattgtgagcgtgtgtgcgtgcatgtgtgtgcgtttgtctgttcaggtgaca 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcatttaattgtgagcgcgtgtgcgtgcatgtgtgtgcgtttgtctgttcaggtgaca 504

                                                                       
Query: 305 actttcaggagttggttatgtctttccactgtgtttgtcccagggaatgaatttaagggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actttcaggagttggttatgtctttccactgtgtttgtcccagggaatgaatttaagggg 564

                                                                       
Query: 365 tcagatttggcccctttacctgcagtgcctcctctctggccctggtttttatgttctttg 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 tcagatttggcccctttacctgcagtgcctcctctctggccccggtttttatgttctttg 624

                                        
Query: 425 tacgttattcttttatcattattttagta 453
           |||||||||||||||||||||||||||||
Sbjct: 625 tacgttattcttttatcattattttagta 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_c01.g1 MSMg01no052_c01.g1 CHROMAT_FILE:
MSMg01no052_c01.g1 PHD_FILE: MSMg01no052_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:39 2005
         (207 letters)



>mm_chr10_82645105_82645711
          Length = 607

 Score =  385 bits (199), Expect = e-111
 Identities = 205/207 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagctgaggaatgtaagcgactgcgttgatttttaggtcacagctgaggatacacagc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 407 actagctgaggaatgtaagcgactgcattgatttttaggtcacagctgaggatacacagc 348

                                                                       
Query: 61  ggtgcacaacagccacacagacaacctggagcccagggatgagtaagacacccacaagct 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 347 ggtgcacaacagccacacagacaacctggagcccagagatgagtaagacacccacaagct 288

                                                                       
Query: 121 gaggacatcagaggtgtaaataccgtgtaactggtagatttttgagctactgcgtatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaggacatcagaggtgtaaataccgtgtaactggtagatttttgagctactgcgtatgtg 228

                                      
Query: 181 ggggtggagggggttgttgctcataac 207
           |||||||||||||||||||||||||||
Sbjct: 227 ggggtggagggggttgttgctcataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)