BAC Information

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BAC

Clone NameMSMg01-052L13
Chromosome10 (Build37)
Map Location 32,932,320 - 33,085,563
singlet/doubletdoublet
Overlap geneTrdn
Upstream geneTcba1, EG667761
Downstream geneA330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052L13.T7 (MSMg01no052_l13.b1)MSMg01-052L13.TJ (MSMg01no052_l13.g1)
ACCAG281136AG281137
length702702
length of high quality
(start - end)
481 (66 - 546)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no052_l13.b1 PHD_FILE: MSMg01no052_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:25 2005CHROMAT_FILE: MSMg01no052_l13.g1 PHD_FILE: MSMg01no052_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,085,122 - 33,085,563)(32,932,320 - 32,932,566)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTCCA
TCATGTTTCCCAGAGCAAAGTAGGTTTGTTTTTGTTTTTTGTTTTTACAT
GGAATATCCTGGCTTTAATCATGTCTTAAAATACCTATTTTAATCATCAA
GTATTTGTGTTAGCTATACCAACAAAGGAGCATTATATTTAAATATATTA
TTTTCTTTTATATTTGTACTTTAATATATGAGAGTGCACTGTCCCAATTA
AAATCAAAATCTTTTATAAAAATTATAACAATAATTGTACTTTATTTTAT
ATAAGCCAACAAACATTAAACCCGAGTTTTCATAAGATTAAAAATGTAAG
TTTAGGAAAATTATAGTAAAATTCACCTGAAATAATAAGTTCACAAACTA
ATGGGCCATTGTCCATTTGAGAAAACATCAATGAGTTAATAAAAGTGATA
CTTTCAGAAATAAACAGTCAGTATTCCTGTCAATCATGTTAGGTACCATT
GTATTTATTGTGTTGTCTCTATTATTAGCCAGCGTACTTTTACCATGCTA
TAGTGATTTAAAACATCCTGCTATGGTGGGGATGTTGCTTAATTTTGCGC
TATTTGCCTGGCATGTTTCAGACCTTGATTACCATAACAACCAAGCTATT
AAAAGCCACGCAAGCTCTTGATAAAAATTTTTATTGTCCAGAACACTTAA
AC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATAAGTTTGTTGTTAGATATATTGTGATTCTGA
AAGTCCCACTTTTTCTCCCTTAATACTACACACTTGGTTAACACTCAGAA
TTTCCTGTTTGAGTCACGGTGAAAGTTTTTTAAAATGAAAAGCTTTCAGA
TTCCGTTGTTAAGAATTTCAGTTATCGTCTAAAGGTTGGGAAGATGAAAA
ATATTAAGTTGACCCATAAATGGGTCCATGGCTCAAGCTACATATGTAGC
AGAGGATTGCCTTGTCTGGCATCAATGGGAGGGAGGCCCTTGGTCCTGTG
GAGACTTGCTGCCCCAGCATAGGGGGATGCTAGAGGCATGAGGCAGGAGT
ATATGGATGGGTGAGCTCACACTTATTAAGGCATAGGGGAGGGTAAATGG
GATGGTGATTGCACAGGTGAGAATAGGAAGGGGACAACTTTTGATCCGCC
ACTACTTTTTAGAACCTATATGATATAATTTATTTATCCTAACCTTACCG
AAAATTGAATGAACTGTTTACTAACAATCCTCCTGAATCCCGAAGGTTTG
TTATTTGCTATCTGAGTTTCGTTTCCCACCTATAAAATGCCCTAATAATA
TCTGTGACATGTGCCCTCACAACCTGTTCCTCTATCTGTTGTTGTTACCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_l13.b1 MSMg01no052_l13.b1 CHROMAT_FILE:
MSMg01no052_l13.b1 PHD_FILE: MSMg01no052_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:25 2005
         (481 letters)



>mm_chr10_33084683_33085563
          Length = 881

 Score =  824 bits (426), Expect = 0.0
 Identities = 438/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 36  ggaatatcctggctttaatcatgtcttaaaatacctattttaatcatcaagtatttgtgt 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ggaatatcctggctttaatcatgtcttaaaatacctattttaatcatcaagtatttgtgt 822

                                                                       
Query: 96  tagctataccaacaaaggagcattatatttaaatatattattttcttttatatttgtact 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tagctataccaacaaaggagcattatatttaaatatattattttcttttatatttgtact 762

                                                                       
Query: 156 ttaatatatgagagtgcactgtcccaattaaaatcaaaatcttttataaaaattataaca 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttaatatatgagagtgcactgtcccaattaaaatcaaaatcttttataaaaattataaca 702

                                                                       
Query: 216 ataattgtactttattttatataagccaacaaacattaaacccgagttttcataagatta 275
           |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 701 ataattgtacttcattttatataagccaacaaacaaaaaacccgagttttcataagatta 642

                                                                       
Query: 276 aaaatgtaagtttaggaaaattatagtaaaattcacctgaaataataagttcacaaacta 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaaatgtaagtttaggaaaattatagtaaaattcacctgaaataataagttcacaaacta 582

                                                                       
Query: 336 atgggccattgtccatttgagaaaacatcaatgagttaataaaagtgatactttcagaaa 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atgggccattgtccatttgagaaaacatcaatgagttaataaaagtgatactttcagaaa 522

                                                                       
Query: 396 taaacagtcagtattcctgtcaatcatgttaggtaccattgtatttattgtgttgtctct 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 taaacagtcagtattcctgtcaatcatgttaggtaccattgtatttattgtgttgtctct 462

                                 
Query: 456 attattagccagcgtactttta 477
           |||||||||||| |||||||||
Sbjct: 461 attattagccagtgtactttta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_l13.g1 MSMg01no052_l13.g1 CHROMAT_FILE:
MSMg01no052_l13.g1 PHD_FILE: MSMg01no052_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:25 2005
         (247 letters)



>mm_chr10_32932120_32932766
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagtttgttgttagatatattgtgattctgaaagtcccactttttctcccttaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ataagtttgttgttagatatattgtgattctgaaagtcccactttttttcccttaatact 260

                                                                       
Query: 61  acacacttggttaacactcagaatttcctgtttgagtcacggtgaaagttttttaaaatg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 acacacttggttaacactcagaatttcctgtttgaatcacggtgaaagttttttaaaatg 320

                                                                       
Query: 121 aaaagctttcagattccgttgttaagaatttcagttatcgtctaaaggttgggaagatga 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagctttcagattccattgttaagaatttcagttatcgtctaaaggttgggaagatga 380

                                                                       
Query: 181 aaaatattaagttgacccataaatgggtccatggctcaagctacatatgtagcagaggat 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aaaatattaagttgacccataaatgggtccatggctccagctacatatgtagcagaggat 440

                  
Query: 241 tgccttg 247
           |||||||
Sbjct: 441 tgccttg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)