BAC Information

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BAC

Clone NameMSMg01-054H24
Chromosome10 (Build37)
Map Location 100,507,156 - 100,507,398
singlet/doubletsinglet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054H24.T7 (MSMg01no054_h24.b1)MSMg01-054H24.TJ (MSMg01no054_h24.g1)
ACCAG282420AG282421
length690699
length of high quality
(start - end)
636 (37 - 672)248 (71 - 318)
definitionCHROMAT_FILE: MSMg01no054_h24.b1 PHD_FILE: MSMg01no054_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:42 2005CHROMAT_FILE: MSMg01no054_h24.g1 PHD_FILE: MSMg01no054_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
CTGACCAATAACAAAGATCTGAGAAGCACTAGAAAAAATGTTCAACATCC
GTAATCATCAGGGAAATAAAAAGTCAAAACAACCCTGAGATTCCACTTCA
ACCAGTCAGAATGGCTAAGATAAAAAAATTCAGGTGTCAGCAGATGCTGG
CAAGGATGTGGAAAAAGAGAAACACTCCTCCATTGCTGGTGGGATTGCAA
GCTTGTTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATAGTACTACTGGAAGATCCAGCAAAACTTCTCCTGGGCATATACCC
AGAAGATGTTCCAACTGAAAATAAGGACACATGCTCCACTATGTTCATAA
CAGCCTTATTTATAATTGCCAGAAACTGAAAAGAACCCAGATGTTCCTCA
ACAGATGAATGGATACAGAAACTGTGGTAAATTTATACAATGGAGTACTA
CTCAGCTATTAAAAACAATGAATTTATGAAATTATTGGGCAAATGGATGT
ATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAGTCA
CTTGATATGCACTCACTGATAAGTAGATATTAGCCATGAAACTTAGAATA
CCCAAGATACAATTTGCAAAACATAAGATAATCAAGAAGA
CGAATGAAGTGAGAGGCCTGGCGGCCGCCTGGTACCTATCTTTAGGTGAA
CTATAGAATTTCCAAGAAAATCTCTCTTGGCACCTATGATTTCTGAGGTG
TAGTTTTATCAGTCTATCCCTGTCTGACTTCAGTTTCTACACACACATAA
TCATGTTCATGGAAGCTACCCTTGAGTAGTTTAGGCAAATAGCATTGGTT
TATAGTTGCTAACCCTAAAGCTACGCTTAAAATTTAGAAATCATGCCAGG
TTGTGGTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCAGCAGAGGCA
GGCGAATTTCTTGTTTCCTAGGTTAGCCTGGTCTACATAGTGAGTTCCAG
GATATTTTTTTTTTACACCCCACCCCCCCTGTCTCAAAAAAAAAAAATAG
AAATCGTATAAAAATAATTTGAGAAGACACATAAAAATAAAATGGGCAAA
GTAACTCTGGAGAAGAGATTTGGAAAGGATCACTTAGATGAACAATGTAT
GTTTTTGTGAAATAAAAAAGTTAAAGTCACTTGATTGTAAGAAGTACTAC
TACTTAGATTACATTCAAATGTTCTTAATCAAGTATTGCCTTTGCATATC
ACTTTGGATATTTCATCTCCAAGTTACTTTCCAGTTACGGACCCATTATA
TTTTTTTATAGGAATACTTGCAAAGGAGATTTGCGGTATTCATTGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_h24.g1 MSMg01no054_h24.g1 CHROMAT_FILE:
MSMg01no054_h24.g1 PHD_FILE: MSMg01no054_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:42 2005
         (248 letters)



>mm_chr10_100507025_100507672
          Length = 648

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcttggcacctatgatttctgaggtgtagttttatcagtctatccctgtctgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 374 tctctcttggcacctatgatttctgaggtgtagttttatcagtctatgcttgtctgactt 315

                                                                       
Query: 61  cagtttctacacacacataatcatgttcatggaagctacccttgagtagtttaggcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagtttctacacacacataatcatgttcatggaagctacccttgagtagtttaggcaaat 255

                                                                       
Query: 121 agcattggtttatagttgctaaccctaaagctacgcttaaaatttagaaatcatgccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agcattggtttatagttgctaaccctaaagctacgcttaaaatttagaaatcatgccagg 195

                                                                       
Query: 181 ttgtggtggcacatgcctttaatcccagcactcgggaggcagcagaggcaggcgaatttc 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 -cgtggtggcacatgcctttaatcccagcactcgggaggcagcagaggcaggcgaatttc 136

               
Query: 241 ttgt 244
           ||||
Sbjct: 135 ttgt 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)