BAC Information

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BAC

Clone NameMSMg01-054O22
Chromosome10 (Build37)
Map Location 65,499,902 - 65,500,242
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik, Reep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054O22.T7 (MSMg01no054_o22.b1)MSMg01-054O22.TJ (MSMg01no054_o22.g1)
ACCAG282737AG282738
length734701
length of high quality
(start - end)
267 (36 - 302)341 (74 - 414)
definitionCHROMAT_FILE: MSMg01no054_o22.b1 PHD_FILE: MSMg01no054_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:14 2005CHROMAT_FILE: MSMg01no054_o22.g1 PHD_FILE: MSMg01no054_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAA
TATCCATGGACTTAGGCTCTTTGTTTCATAGCAGGTACCTTTCTGTATGA
TATACCAGGTTTAAAGAGAAGCCCTATGACTTGGCTGTGGTAGCAAATAC
CTGTGATCCCAGTATTTGGGAGGCTGAGGCAGGAGGATTGCGAATTGATT
CCAGCTTAGACTACATAGTGAAATCTATCTTAAAAGAGAAATAGAAAAAG
AAAGAAAGGGGGGAGAGAGAGGGAGGGAAGGAGGAAAGAAGGAAGGAAGG
ACCCTTTTTTTTTTTTCTCTTAATAATTCTACAAGTTGCCCCTCCATTTA
TTTTTCCCCCCCCCCCCCCCCCTCTACACTTTTTTATTCTTTTTTTTTCT
TTTTTTTTGTCCCCCCCCCCCCAATTTTTATTCCTCTATTCCCTCCCCCC
CTCTATCTTCTCCTCTTGTCCTCACATCATCCTTCCCCCTTCTATTATCT
TCTATTTTCTTCTTCTTTTTCACCTATTTTTTCCGCCTTACCCTTTTTCC
TACTCTTATTCACTCTCCCATTCCGTCTTAATCTAAAAATTATATTATTT
CTCCTTTTCCGTTAATATTAATTCTACTCCCTACTATTTTTCACCTTCTT
TTCTACCTCCGCCTTCTTCTCTTCCTCCTTCAAATTCCCCTCTATCCACC
TCTCAACAAATAACTTTCCTCTATTTTTAATATC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATTCTGAAAATACCCTAGGATGATG
GTGGTGACTGCAAAGCGACAGAAGGAAATGCCCCTGTGTTGCAAACTGCT
AGAGAAGGAGAACTCACATCAGCACCAAGAAAACAAAGTATAGAAGTCAT
ACAACTAATCATACATAGCAAGAGGCAAAGTCCTGGCCCAGAATGCCAAG
TTTGAAATCTCAGTCCAGACCTCACTGAGTTTGAAGCCACAACACTGACA
TAATTTCTTAAATGCCTAGATTATGCTTATTTTAAAAATTATATATATAT
GTGTGTGTGTGTTTATAGATGCGTGTGTGTGCTTATAGATTTGTTCTACA
GAGATCAAATTAAAACGCCCAATTTATGAGAAAGTGGTAATTGCCCAGCT
AGTAACAGCAATGTGTTTCTTTTAAAATTAATGAAAATACAATGTAAAAC
AACAATCATCTATGTACTCCAGACCCACCTGAAACTTCCTTTGTAAAATG
ATGATTTTAAACTTCTGATCCTCTTTTGTCTGAGAGATGTGATTATATTA
TACCCAGTTTATAGCATAAAAAATTTTCAACCTTTGATTTGCGATCCGTT
TTTGTTTCATGACCTTTCACATAAGTCACCTAATACCTTATGGAACACTG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_o22.g1 MSMg01no054_o22.g1 CHROMAT_FILE:
MSMg01no054_o22.g1 PHD_FILE: MSMg01no054_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:14 2005
         (341 letters)



>mm_chr10_65499702_65500442
          Length = 741

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattctgaaaataccctaggatgatggtggtgactgcaaagcgacagaaggaaatgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattctgaaaataccctaggatgatggtggtgactgcaaagcgacagaaggaaatgccc 260

                                                                       
Query: 61  ctgtgttgcaaactgctagagaaggagaactcacatcagcaccaagaaaacaaagtatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgttgcaaactgctagagaaggagaactcacatcagcaccaagaaaacaaagtatag 320

                                                                       
Query: 121 aagtcatacaactaatcatacatagcaagaggcaaagtcctggcccagaatgccaagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtcatacaactaatcatacatagcaagaggcaaagtcctggcccagaatgccaagttt 380

                                                                       
Query: 181 gaaatctcagtccagacctcactgagtttgaagccacaacactgacataatttcttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatctcagtccagacctcactgagtttgaagccacaacactgacataatttcttaaat 440

                                                                       
Query: 241 gcctagattatgcttattttaaaaattatatatatatgtgtgtgtgtgtttatagatgcg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gcctagattatgcttattttaaaaattatatatatatgtgtgtgtgtgtttatagatgtg 500

                                                    
Query: 301 tgtgtgtgcttatagatttgttctacagagatcaaattaaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgcttatagatttgttctacagagatcaaattaaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)