BAC Information

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BAC

Clone NameMSMg01-057F09
Chromosome10 (Build37)
Map Location 50,526,731 - 50,527,063
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneLOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057F09.T7 (MSMg01no057_f09.b1)MSMg01-057F09.TJ (MSMg01no057_f09.g1)
ACCAG284516AG284517
length703694
length of high quality
(start - end)
341 (44 - 384)407 (72 - 478)
definitionCHROMAT_FILE: MSMg01no057_f09.b1 PHD_FILE: MSMg01no057_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:15 2005CHROMAT_FILE: MSMg01no057_f09.g1 PHD_FILE: MSMg01no057_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCCATATCACCGAGAAATGGAGAATGACAATAGAGCAAATACTGGGG
AAGGCACACGAGAAAGATTTGGGAAGGTATCTTTGAGCAATTTGGCTGAG
CTGAAGAACAGTAAAATTACTGTTTTAAAAGTTTAAACAAACAAGGAATG
GTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCTAGCTTGGT
CTACAAAGTGAGTTCTAGGACAGCCAGGGTTACACAGAGAAGTCCTGTCT
CAAAAAACCAAACTGAACCGAACTGAACCAAACCAAGCCACAAACCAAAC
CAACATTCGCCCCCCCCCCCCAAAAAAAACTAAACTAATCATAAATTAAA
AAAAACTAAAATCCCCCCATCCAACCAACCAAAAAAACTTAACATAGCTG
AGATTGGGCACAAACTTAAAAGAGGGTACTGATTCATATCTTTAGAAGAC
AACATTACCACTATGTTTCAAACATACGTAATGCCTATACATATGTTTGA
TAACAGCTTAGGCCTGAAACGACTGCCCCTATCTGGTTAGTAAATAACTT
CTTAGGTAAAACAGATATTTCGATTACCAATTTGATATATACAACATTTT
TTCAGATCTTCAAAGGAGTTATTTGGTTTTAAAATATCTCCCAAACCTTG
ATT
ATTGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTAAT
GGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGT
TGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAA
TCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAA
ACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCAC
AAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCA
AGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAT
GTGAAGTCCCTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGT
ATGGATCGATTCGCATTCTTCTACACGATAAACCCAGTTGTGCCAGCACC
AAGTGTTGATGTCTCCCTTGTAGGCTTTTCCTTGCCCTCTTTTGTGTATC
TTTGGTGTTATATTTGTTCACATCATATGTTGGCAGTCTTGATGATGAGG
CTTTACGGCCATAGCTTCTGATGTTTACAGGAGACCCAATCTCTTATTAT
AATCCCTGCCTCCTCTGTTTTCTTCAGTCTTCCTTCCTTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_f09.b1 MSMg01no057_f09.b1 CHROMAT_FILE:
MSMg01no057_f09.b1 PHD_FILE: MSMg01no057_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:15 2005
         (341 letters)



>mm_chr10_50526724_50527464
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 330/333 (99%), Gaps = 1/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattccatatcaccgagaaatggagaatgacaatagagcaaatactggggaaggcaca 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggaattccatatcacagagaaatggagaatgacaatagagcaaatactggggaaggcaca 281

                                                                       
Query: 66  cgagaaagatttgggaaggtatctttgagcaatttggctgagctgaagaacagtaaaatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cgagaaagatttgggaaggtatctttgagcaatttggctgagctgaagaacagtaaaatt 221

                                                                       
Query: 126 actgttttaaaagtttaaacaaacaaggaatggtggtgcatgcctttaatcccagcactt 185
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 220 actgttttaaaagtttaaacaaacaaggagtggtggtgcatgcctttaatcccagcactt 161

                                                                       
Query: 186 gggaggcagaggctagcttggtctacaaagtgagttctaggacagccagggttacacaga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gggaggcagaggctagcttggtctacaaagtgagttctaggacagccagggttacacaga 101

                                                                       
Query: 246 gaagtcctgtctcaaaaaaccaaactgaaccgaactgaaccaaaccaagccacaaaccaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gaagtcctgtctcaaaaaaccaaactgaaccgaactgaaccaaaccaagccacaaaccaa 41

                                            
Query: 306 accaacattcgccccccccccc-caaaaaaaac 337
           |||||||||||||||||||||| ||||||||||
Sbjct: 40  accaacattcgcccccccccccacaaaaaaaac 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)