Query= MSMg01no058_m03.b1 MSMg01no058_m03.b1 CHROMAT_FILE:
MSMg01no058_m03.b1 PHD_FILE: MSMg01no058_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:05 2005
(525 letters)
>mm_chr10_24832192_24833116
Length = 925
Score = 969 bits (501), Expect = 0.0
Identities = 519/525 (98%)
Strand = Plus / Plus
Query: 1 aaattaaattcgaatggatgaatttctcatgcatgctgaacgaaacaattagttccataa 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattaaattcgaattgatgaatttctcatgcatgctgaacgaaacaattagttccataa 260
Query: 61 tggttatttattaagtctttgcattgtgcccgctggaaaccacaaccggcaaggcttagc 120
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 261 tggttatttattaagtctttgcattgcgcccgctggaaaccacagccggcaaggctgagc 320
Query: 121 ggatacaaaagatttttttaaatgaaagcttaggatggaaagacactgagcaggaaaaaa 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatacaaaggatttttttaaatgaaagcttaggatggaaagacactgagcaggaaaaaa 380
Query: 181 agctcaatggaaatttaagcttgttgtttgtgtacaaaactatattaggataaaaatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctcaatggaaatttaagcttgttgtttgtgtacaaaactatattaggataaaaatttg 440
Query: 241 atcttcagtaatgggtaccttcacattgtatttagtattttgcataaattttaatactcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcttcagtaatgggtaccttcacattgtatttagtattttgcataaattttaatactcc 500
Query: 301 cagcaggtccaccacagcacagaacaatccccagtatttgactctgtgcctgggtctgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcaggtccaccacagcacagaacaatccccagtatttgactctgtgcctgggtctgct 560
Query: 361 acaacagactctttccagccttctcctctgcttggcatcagctcatcggctccctgctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaacagactctttccagccttctcctctgcttggcatcagctcatcggctccctgctgg 620
Query: 421 cttggtttgggctcagcctgtaggacacactttccttctgcagttcaatatctgtaggta 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttggtttgggctcagcctggaggacacactttccttctgcagttcaatatctgtaggta 680
Query: 481 gctgacctagacctatgacaatttgacgtccatccttctcttagg 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgacctagacctatgacaatttgacgtccatccttctcttagg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_m03.g1 MSMg01no058_m03.g1 CHROMAT_FILE:
MSMg01no058_m03.g1 PHD_FILE: MSMg01no058_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:05 2005
(469 letters)
>mm_chr10_24930183_24931054
Length = 872
Score = 832 bits (430), Expect = 0.0
Identities = 461/472 (97%), Gaps = 3/472 (0%)
Strand = Plus / Minus
Query: 1 tcttctga-aaaatcagctgtttgactaggatggagcggtgatagaccaccttgtgagtt 59
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 672 tcttctgacaaaatcagctgtttgactaggatggatcggtgatagatcaccttgtgagtt 613
Query: 60 gtttgtggagccttcaatttgaagtgtattttcaaaaagttaaaatgttgaactcccagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtttgtggagccttcaatttgaagtgtattttcaaaaagttaaaatgttgaactcccagt 553
Query: 120 ttaaaaaaaaa--tacaaataaaattctgtacaggggagttggttttctttgtgtagcca 177
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttaaaaaaaaaattacaaataaaattctgtacaggggagttggttttctttgtgtagcca 493
Query: 178 ctgatagggtgatcattctccattggatggcagtgggtccaagagtatgtggacagtaca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctgatagggtgatcattctccattggatggcagtgggtccaagagtatgtggacagtaca 433
Query: 238 aattgcactttgtggtcttaaaacaagaaaaccaagaggatacaatttgggtggtagtag 297
||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 432 aattgtactttgtggtcttaaaacaagaaaaccaagaggatacaagttgggtgggagtag 373
Query: 298 gctggtgagtgtgattaaaatatgtttatgaaattctcaaagaactaaaaataaaaacaa 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 372 gctggtgagtgtgattaaaatatgtttattaaattctcaaagaactaaaaataaaaacaa 313
Query: 358 tgcagggaattatataactgccagcagataaagctaaaaaccagcatttaaccatgaact 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcagggaattatataactgccaggagataaagctaaaaaccagcatttaaccatgaact 253
Query: 418 cagatccattgtagtaatgtgcactgaacacacccaagatgggccatatcaa 469
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 cagatccattgtagtaatgttcactgaacacacccaagatgggccatatcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 872
Length adjustment: 10
Effective length of query: 459
Effective length of database: 862
Effective search space: 395658
Effective search space used: 395658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
