BAC Information

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BAC

Clone NameMSMg01-059I10
Chromosome10 (Build37)
Map Location 73,856,720 - 73,857,197
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC432471, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059I10.T7 (MSMg01no059_i10.b1)MSMg01-059I10.TJ (MSMg01no059_i10.g1)
ACCAG286183AG286184
length710768
length of high quality
(start - end)
478 (72 - 549)149 (71 - 219)
definitionCHROMAT_FILE: MSMg01no059_i10.b1 PHD_FILE: MSMg01no059_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:03 2005CHROMAT_FILE: MSMg01no059_i10.g1 PHD_FILE: MSMg01no059_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXCTANATCCGAAGGACCGCGG
AATTCTACCACTTTCACACACGTCAGTCTGGCGTGGCAAGGTGGAGAGTT
GGAGGAAGTTCTAGGTCATGGAAAGGTTAGATCTTTCAAGAGATGAAGAA
CTTGTTTGCTGCAGTGGGCTACTCTCACAGATGCTCTCTCAGCTTGGAAA
CTCATCAAGCTGTCCAGGTGTGGGATTTGTACTCTTCCCTGCATAGATTC
CAATAAAATCATTTAATTTAAAAGATGCATACGAACGAATACACATGCAT
GTAAAAATACTGTGAGTTTATTTATAGAAATTAAAATTCTTCTGACTAGA
TGAAATGCAGGGGTTTTATTTTTCCCTTGTAACCATTTCTATATTTCTCA
AATCTTTCCCAAGAAAGCCACAATGCTTTTGTAACAGAAAAATATTTTAA
CAAATGTTATTTCTAGTTATCTTAGAGGTGAAACCAGGTTCTTTTTTTTT
AATGTGTTTTATAGTAGCAGTATCTCCCAATTTGCCTGAGGGTGAACAGA
TATATAATTTGACAGCTTGAATCTAAGACTTCTCAGTGGTTGCACTTGTG
TCTCTGGCTTTCCATCAAGCTCCCTGGACACCTCTATGTCCACTTCTGTA
TCTCCTACCAATCTATTCCTTATCTCCCTATATAGCTTTTCTTTTCTTTT
CTTTTCTTTA
NCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGGAATTCCTTCCCCAACAGGGCTGCTCTGTTG
GACCTCAATAGGAGAGGATGCACCTAACCCTGGAGATACTTGTTGCACTA
GAATGGAATACCCAAGGGCCCCCACCCTCTCAGAGGAGAAGGGAAGATGG
GGAATGGGGAGAGGGTCCTGTGTTTCTAGATTTTTCTTTTCCCCTTTCCT
CCCTTTTCTTTGCTCTTCTTCTCCTTTTTCTTTCCCCTCTTCTTTTCCCT
TCCCTCCTCCCCCCTTCTTTTTTTTTTTTTTCCTCCTCCTCTTTTTTTTT
TTTTCTTCTCTTTTTTTTCTTTCCTCCTTCCCCCCTTTCCTATTTTTTTT
TTCTTTCTTTTCGTTTTTTTTCCCCCCCCCTGTTCTTTACATCTTTATTT
CTCCTTTTCCGACCTTCCTCTTCTTTTTTTCTCTCCTTTTTTTCCTTTTC
CTTTTTTTTTTCTCTCTCTTCTTTTCTCTCACCTTCTATTCCTTTTTCAT
TTCTTTTTCTTTCCTCTCCGTTTTTTTTTCTTTCTTTTCTCCCTTTTTTT
TCCTTTCCCTTTTTCTTTTTTTTCCTCTTTCTTTCGCCTCCTTCTTTTTC
TCTTTCGTGCTACTTCGTCTCCTTCTTTTTCCTTTCCCCTTTCTTCTTCC
CCTTCTGTTCCCTTTTCATTCCTTTCCTTCCTTCTTTACTCTTTTCCCTT
CTTTTCTTTCTTTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_i10.b1 MSMg01no059_i10.b1 CHROMAT_FILE:
MSMg01no059_i10.b1 PHD_FILE: MSMg01no059_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:03 2005
         (478 letters)



>mm_chr10_73856520_73857397
          Length = 878

 Score =  886 bits (458), Expect = 0.0
 Identities = 473/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcagtctggcgtggcaaggtggagagttggaggaagttctaggtcatggaaaggttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtcagtctggcgtggcaaggtggagagttggaggaagttctaggtcatggaaaggttaga 619

                                                                       
Query: 61  tctttcaagagatgaagaacttgtttgctgcagtgggctactctcacagatgctctctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctttcaagagatgaagaacttgtttgctgcagtgggctactctcacagatgctctctca 559

                                                                       
Query: 121 gcttggaaactcatcaagctgtccaggtgtgggatttgtactcttccctgcatagattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcttggaaactcatcaagctgtccaggtgtgggatttgtactcttccctgcatagattcc 499

                                                                       
Query: 181 aataaaatcatttaatttaaaagatgcatacgaacgaatacacatgcatgtaaaaatact 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aataacatcatttaatttaaaagatgcatacgaacgaatacacatgcatgtaaaaatact 439

                                                                       
Query: 241 gtgagtttatttatagaaattaaaattcttctgactagatgaaatgcaggggttttattt 300
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtgagtttatgtaaagaaattaaaattcttctgactagatgaaatgcaggggttttattt 379

                                                                       
Query: 301 ttcccttgtaaccatttctatatttctcaaatctttcccaagaaagccacaatgcttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcccttgtaaccatttctatatttctcaaatctttcccaagaaagccacaatgcttttg 319

                                                                       
Query: 361 taacagaaaaatattttaacaaatgttatttctagttatcttagaggtgaaaccaggttc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 taacagaaaaatattttaacaaatgttatttcaagttatcttagaggtgaaaccaggttc 259

                                                                     
Query: 421 tttttttttaatgtgttttatagtagcagtatctcccaatttgcctgagggtgaacag 478
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 258 tttttttttaatgtgttttatagcagcagtatctcccaatttgcctgagggtgaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)