BAC Information

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BAC

Clone NameMSMg01-059K11
Chromosome10 (Build37)
Map Location 113,449,143 - 113,449,763
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059K11.T7 (MSMg01no059_k11.b1)MSMg01-059K11.TJ (MSMg01no059_k11.g1)
ACCAG286281AG286282
length713714
length of high quality
(start - end)
621 (72 - 692)---
definitionCHROMAT_FILE: MSMg01no059_k11.b1 PHD_FILE: MSMg01no059_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:12 2005CHROMAT_FILE: MSMg01no059_k11.g1 PHD_FILE: MSMg01no059_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATC
CGCGGAATTCACTCTTATCACCGGATTCTTCTACGGCAAAGCTTTATTGC
TTCATCTGAAGGAAGACCCCGAACAAGGAAAATGGTGCCGCTTATATAAC
CCTCCGTGTGAGGTGTCAGCTCCTGATTAGCTGCTCACTCATCACCTTAC
TACTACGCCCCGGGATGGGCAGTGACTTGGCACGAATTTACTCTTGCACC
TGCGCACATTACTTGTTTACCAGTTAGGCACAATGGAGGCTCATGATGGC
GATTGCTCACGGCTCTCCATTTACAAATACAAGATAATTTTGTTTCAAGC
TCATGTGAAGAAAGATAACTTTTGCATTCATTGATGCCATATTCTTTAAC
TCTGAAACAGTAGAGTAAAGCGAATCATGTATCATAGATGTGATTAGAAA
CAGTTGAAAGCAGCATGACTTTATAATTTATAGTATAGAAAGTGATATGA
GTTTAGCAAATTGTATCTTATATCTTGGGGATCCTAGGTTTTGGGCTAAT
ATCCTCTTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTT
ACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTT
CATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGCAAATGT
ACCACATTTTCTG
CCCCGATGACAGGGGAGGCCTGGNGGNNGNNGGTTCCCAACNCGCAGGNG
AACNANAGACTGACGNGCAGGGGGCNNNGNNCAGNNCNGAGCCCCANNNA
NNAAGGGAGANANNGGACCCCCCGAAGNCCACCNGCGGGAGGGCNNAAGA
NAGGGGGGACANNAGGCCCCNACCGGANNNAGGANAGGAAAAGAACCNNC
CCCAANCCGCGGGGGGCCCNAGCGCCCAACCGACGGCGACAACCGCCTTG
CAGAAACCCNGGAGCCCCACGAGGCCCCCCGAGANCCNCGNAACACAAAG
AANAAACAGGCTTTTTTTTTTATCAGGGAAACAACACCCCTCTCAACAGC
CAACAAATAATATCCCCCCCCCTCGGCGNGACTCTAACTAAGGAAGTGAA
AGATCTGCATGATTAAAAACTTCAAGTCTCTGAAGAAAGAAGTTAATGAT
ATGTGAAGTTGGAAATATCTCCCATTCTCATGGATTGGCTTTTTATCGAG
GAACTGAGTCCATTGATATTAAGAGATATTAAGGAAAAGCATTTGTTACT
TGCTATCATTTTCGCTGTTAGAGTTGGTATACAATTCATGCGGCTCTCTT
CTTTTAGGTTTGCTTAAAGATAACTTTCCCGCTTTCTCCAGGGTGTGTTT
TCTTTTCCAGGACCCCCATATTCCACCCGCATTATCTTTAGAAGGGCCGG
AACACCACCCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_k11.b1 MSMg01no059_k11.b1 CHROMAT_FILE:
MSMg01no059_k11.b1 PHD_FILE: MSMg01no059_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:12 2005
         (621 letters)



>mm_chr10_113448893_113449913
          Length = 1021

 Score = 1007 bits (521), Expect = 0.0
 Identities = 596/621 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggattcttctacggcaaagctttattgcttcatctgaaggaagaccccgaacaaggaaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cggattcttctagggcaaagctttattgcttcatctgaaggaagaccccgaacaaggaaa 812

                                                                       
Query: 61  atggtgccgcttatataaccctccgtgtgaggtgtcagctcctgattagctgctcactca 120
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 811 atggtgccgcttatatacccctctgtgtgaggtgtcagctcctgattagctgctcactca 752

                                                                       
Query: 121 tcaccttactactacgccccgggatgggcagtgacttggcacgaatttactcttgcacct 180
           |||||  |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 751 tcaccccactactacaccccgggatgggcagtgacttggcatgaatttactcttgcacct 692

                                                                       
Query: 181 gcgcacattacttgtttaccagttaggcacaatggaggctcatgatggcgattgctcacg 240
           |||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||
Sbjct: 691 gcgcacattacttgtttaccagtttggcacagtggaggctcatgatggcaattactcacg 632

                                                                       
Query: 241 gctctccatttacaaatacaagataattttgtttcaagctcatgtgaagaaagataactt 300
           ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 631 gctctccacatacaaatacaagataattttgtttcaagctcatgagaagaaagatacctt 572

                                                                       
Query: 301 ttgcattcattgatgccatattctttaactctgaaacagtagagtaaagcgaatcatgta 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct: 571 ttgcattcattgatgccatcttctttaactctgaaacagtagagtaaagtgaatcaagta 512

                                                                       
Query: 361 tcatagatgtgattagaaacagttgaaagcagcatgactttataatttatagtatagaaa 420
           || |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 511 tcgtagatgtgattagaaacagttgaaagcaccatgattttataatttatggtatagaaa 452

                                                                       
Query: 421 gtgatatgagtttagcaaattgtatcttatatcttggggatcctaggttttgggctaata 480
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 gcgatatgagtttagcaaattgtatcttatatcttgggtatcctaggttttgggctaata 392

                                                                       
Query: 481 tcctcttatcagtgagtacatattgtgtgagttcctttgtgaatgtgttacctcactcag 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tccacttatcagtgagtacatattgtgtgagttcctttgtgaatgtgttacctcactcag 332

                                                                       
Query: 541 gatgatgccctccaggtccatccatttggctaggaatttcataaattcattctttttaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gatgatgccctccaggtccatccatttggctaggaatttcataaattcattctttttaat 272

                                
Query: 601 agctgagtagtactccattgt 621
           |||||||||||||||||||||
Sbjct: 271 agctgagtagtactccattgt 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)