BAC Information

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BAC

Clone NameMSMg01-060A04
Chromosome10 (Build37)
Map Location 104,972,274 - 104,972,399
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A04.T7 (MSMg01no060_a04.b1)MSMg01-060A04.TJ (MSMg01no060_a04.g1)
ACCAG286555AG286556
length756720
length of high quality
(start - end)
84 (75 - 158)126 (77 - 202)
definitionCHROMAT_FILE: MSMg01no060_a04.b1 PHD_FILE: MSMg01no060_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:39 2005CHROMAT_FILE: MSMg01no060_a04.g1 PHD_FILE: MSMg01no060_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTAGCGGCGCTAATACGACTACTATATCCAGACAATCCGCGGA
ATTCTTCTACCTTGCCTGATGTCAGCCTACTAACATGACATCACTGCACA
AGAATTGAGAAGTCCCTACTACTACTCCATTGCATGCTATTTCCCACATT
TTAATATAACACATGTAGATAATTTAAAATGCATACAGCGATAGCATTAA
TTGCCAAATTTACACAATCTAGAGTCATATGGCAGATGATTTGCGAAGAT
ACATCTTAATTGTGGGGAAGACCACTCCCTGAATTGTATATTACATGGAG
AAAAGGATATGACTGCTAACTTTCCTTCTTCCCTCTCTATGATCATGGAT
ATCATGTGACAAATTCTTTCAAGACCGGAGCCTTGACTTTCCCATTATGA
CGGCCTATAACTTCCAGTATCACCTACAGCATACCCTCTTCTCTTTTAAC
CTACTTTCGTCCCCACACTTCTATCACCGCTCTTGTCACTTCACTTGCAC
TTTCTCACCTCCTTCATATCTTCCGTTTACTTTTACCCAGCATTTATACT
TTACCCCCTCATTATTTCCGTCTCCCTGATTTGTCCAATATACCCCCCGT
TACCTTTATCGACTCTAACCTCCTCCCCCTTTCCACATACATTGCCCTTT
CACTCTCGCTCCCCCACCCCTCCCGTCTTTACACCTATTTGCCTCCTGTC
TTCCCCTTTCTCTCTTCGTCCTCATCCATTCCCTCTGTCTCATTTATCCC
GCTTCA
ATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACATGGATGGAGGTCTCTGAAA
AGAACTCATGCTACATGAGACATACGTGCCTCTATTTCTCTGCTGTCTGC
TGCTGACAGGACCTCTTCTCTATTAGCAAAGTTCTCACATTCAGAGGGTC
AGAGGAGAGTTAGGCATGCAACCACACAAATTGCGGAAAGAAACTGGAAC
AAGGGGCGGAATGAGTCATCCCCCGGCTATTCTACAGGTGCCCTACTGTT
GTCACCAGAGCAGCCAAGGGCGAGCAGAGGGGCGGTGCCCCTGATTGTGA
TTCTGCTGCCATGCGCGGGGGACTTGACATCCATGACTTAGCTTCTCAAA
ACTATACCTTTACAGCGTGAAAAATATACCTTTGCTACTCCTCCTCTATA
CAAACCAACAAGGAAGAACGGCAAAATAGACCGGACAGACCACACTTAGC
TTTTGGTCTCCCACGACCTGGTACTCTACTTCCCAACCCACCTCCCCACC
ACTTTCCTGAATACCCCACTGGTGGCAAAATACCAATGGAGCTGTCTCCT
TTAGACACCTCTTCCTCTGCTCCCAAAGTTTTGAAGTGACAATTCGACTC
CCTAAAAGCGCCTGTTCTGCTCCGATTTAAGCTATGAGATCCCTGCACCT
GCCAATGTTTCCCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a04.g1 MSMg01no060_a04.g1 CHROMAT_FILE:
MSMg01no060_a04.g1 PHD_FILE: MSMg01no060_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:39 2005
         (126 letters)



>mm_chr10_104972074_104972599
          Length = 526

 Score =  228 bits (118), Expect = 8e-65
 Identities = 124/126 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacatggatggaggtctctgaaaagaactcatgctacatgagacatacgtgcctctatt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tcacatggatggaggtctctgaaaagaactcatgcgacatgagacatacgtgcctctatt 260

                                                                       
Query: 61  tctctgctgtctgctgctgacaggacctcttctctattagcaaagttctcacattcagag 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgctgtctgttgctgacaggacctcttctctattagcaaagttctcacattcagag 320

                 
Query: 121 ggtcag 126
           ||||||
Sbjct: 321 ggtcag 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)