Query= MSMg01no060_n19.b1 MSMg01no060_n19.b1 CHROMAT_FILE:
MSMg01no060_n19.b1 PHD_FILE: MSMg01no060_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:41 2005
(183 letters)
>mm_chr10_26645421_26646003
Length = 583
Score = 224 bits (116), Expect = 2e-63
Identities = 164/186 (88%), Gaps = 18/186 (9%)
Strand = Plus / Minus
Query: 1 gtaggcctagggtacttgggactgatgggaaaggctccatcaagatcaacagagacatcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 312 gtaggcctagggtacttgggactgatgggaaaggctccatcaagatcaactgagacatcc 253
Query: 61 aatcttgtagcaagaaaaactattagacttcttggaccttccatatatatagagatagat 120
||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||
Sbjct: 252 aatcttgtagcaagaaaaactattagatttcttggactttccatatatatagatatagat 193
Query: 121 agatagatagatagatagatagatagatagata--gata--gata--gatagatagatag 174
| |||||| |||||| |||||| |||||| |||| |||| |||| ||||||
Sbjct: 192 a--tagata--tagata--tagata--tagatatggatatggatatggata--tagata- 144
Query: 175 atagat 180
|||||
Sbjct: 143 -tagat 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space: 100625
Effective search space used: 100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no060_n19.g1 MSMg01no060_n19.g1 CHROMAT_FILE:
MSMg01no060_n19.g1 PHD_FILE: MSMg01no060_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:41 2005
(541 letters)
>mm_chr10_26547297_26548238
Length = 942
Score = 957 bits (495), Expect = 0.0
Identities = 524/539 (97%), Gaps = 10/539 (1%)
Strand = Plus / Plus
Query: 1 cttctgcagggaggaactgagagctatttgtgatatttgtgatgcagatgactggtctgg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 210 cttctgcagggaggaactgagagctatttgtgat---------gcagatgactggtctgg 260
Query: 61 gtttgaatgtgcatccttatcatttgagatttatagaagcaaaatggaaatacctgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgaatgtgcatccttatcatttgagatttatagaagcaaaatggaaatacctgcttt 320
Query: 121 taagatggttccactagaatctgcctgcctggctcaacatgcattattattattttcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagatggttccactagaatctgcctgcctggctcaacatgcattattattattttcaaa 380
Query: 181 agtggcgacgatgaacatttaaatgccaattcactccaatcaagaaaacatgcaaattac 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggcgacaatgaacatttaaatgccaattcactccaatcaagaaaacatgcaaattac 440
Query: 241 ctctctccctgattcttagttactacttgaagagatggaattagttagcatgcccttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctctccctgattcttagttactacttgaagagatggaattagttagcatgcccttact 500
Query: 301 tttattagcataatattaatgcagatgatcagtaagggttactctctctctcttttgaga 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tttattagcataatattaatgcagatgatcagtaagggtttctctctctctcttttgaga 560
Query: 361 aaagagaggagccaaggaaagcgattaataacagcttatttcctcagcgaggaagaaaaa 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagagaggagccaaggaaagcaattaataacagcttatttcctcagcgaggaagaaaaa 620
Query: 421 aaaa-catttatgattagacccttaactgcattacctgtgccatatatagaccttctgct 479
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 aaaaacatttatgattagacccttaactgcattacctatgccatatatagaccttctgct 680
Query: 480 tgaacctaaagaggtacccagatcgaaatcaacatctgtttagctcttcccctcataga 538
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 tgaacctaaagaggtacccagatcgaaatcaacatcggtttagctcttcccctcataga 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
