BAC Information

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BAC

Clone NameMSMg01-060N20
Chromosome10 (Build37)
Map Location 99,303,937 - 99,430,525
singlet/doubletdoublet
Overlap geneLOC100042246
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060N20.T7 (MSMg01no060_n20.b1)MSMg01-060N20.TJ (MSMg01no060_n20.g1)
ACCAG287209AG287210
length731679
length of high quality
(start - end)
463 (38 - 500)532 (71 - 602)
definitionCHROMAT_FILE: MSMg01no060_n20.b1 PHD_FILE: MSMg01no060_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:41 2005CHROMAT_FILE: MSMg01no060_n20.g1 PHD_FILE: MSMg01no060_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,430,169 - 99,430,525)(99,303,937 - 99,304,466)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCAATGAATGTCCTTTCACTTTAAAAAGTAGCAAATCCTAGCAGCATGC
CACAGCATGTGACATGTCTGCAACCTCAATTACTCCAGAGAATGGAGACA
GAGGAGATGCCTGGACAATTTGACATGACCTTCATCTAAACTACTGGTTC
TCAGCCTTCCTGATGCTACAACCTTTTACTATAGTTCTTTGTATTGTGGT
TGGTCCTAAGCCATTAAATTATTTCAGTGTTCCTTCATGACTGTAATCTT
GTCACTGCTGTGAATTGTAATGTAACAGGACGGGACATGTGATGTGTGTC
CCCCTAAAGGGGTTGTGACTCACAGGTTGAGAACCATTTGATCTAAACAG
CAGTAACAACAAATGTAAATCTTTAGGCAGGTGCTCGATGCTTTGGAGGA
AATTTCAATTTATATCCTTAGTGAACTAAGTAGGAGATTTGAATCCACCA
AAGAGATGGTCAGTTCTGTAAAAACAACAGCGAAAAATTTATTTCAACAA
TAAAAGGACACGTCTATTAGGAACTTGAAAAAAAGACAACCGAGGCTCCT
CTTCTTATCGCTGAAAAATAATTGCTTTTAATAGAACTACTGCCATAAAA
GAGCTTAAGAAGCCATTCCCCTCCATAACAGCTGACTTCAGAACATGTGA
CAATCACACCTGAAATGATCTATTCTGGAGC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAGACAGAAATATCATCTGAAATGGTAC
TGAGTCTAGAAAGGACATGATGGGTAGGGGGAAGACAGGACAGATGACTC
AGCCCATCCACATGGCCTTTGGCTCAACTACTGGAGTTGGTAAGTGTTAG
CTGGAGCTGTTAAGTGCTTTCCTGCCTTTCCTTCCATCTCTTTAGAGTGA
CTTTTGTCAGTTTCTCACCTTGCTACTAGAGAGACACTTTCAAAATGTAA
ACCACAAATTCCACAGTGACTCCCCCGCCCCCCACACACACACAACTGCC
CACACAGTGAATGTCAAATTCCCAGCATGGGCTCGCAGGAATCTTCTGTT
CCTTTGCCTGTGTTTCCACCCCCCTCCAGCCCTAAATGCCAATGGCTCTG
TTTATGGCTCTTCAAAGCAGTCCTGTTCGGTCACCTACTTATGTCTCTGC
CAACTGCTACTTCCTTTGCTTACAATGCCTTGGACTGCCTGCAGAACTGC
CACACTGCCTTTCATCGGGGCACAGACTCTGTAGTTTGTGAACAGAGGAC
CGCCAACTATAGCGACGATTGAAATTCGAAGCTTTGACCATTAACGTATG
CTCTTGCTATCTAAAAACCGCTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_n20.b1 MSMg01no060_n20.b1 CHROMAT_FILE:
MSMg01no060_n20.b1 PHD_FILE: MSMg01no060_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:41 2005
         (463 letters)



>mm_chr10_99430169_99431031
          Length = 863

 Score =  667 bits (345), Expect = 0.0
 Identities = 354/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcaatgaatgtcctttcactttaaaaagtagcaaatcctagcagcatgccacagca 70
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaattcaatgaatgtcttttcactttaaaaagtagcaaatcctagcagcatgccacagca 298

                                                                       
Query: 71  tgtgacatgtctgcaacctcaattactccagagaatggagacagaggagatgcctggaca 130
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 297 tgtgacatgtctgcaacctcaattactccagagaatggagacagaggagctgcctggaca 238

                                                                       
Query: 131 atttgacatgaccttcatctaaactactggttctcagccttcctgatgctacaacctttt 190
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 237 atttgacatgaccttcatctaaactactggttctcaaccttcctgatgctacaacctttt 178

                                                                       
Query: 191 actatagttctttgtattgtggttggtcctaagccattaaattatttcagtgttccttca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 actatagttctttgtattgtggttggtcctaagccattaaattatttcagtgttccttca 118

                                                                       
Query: 251 tgactgtaatcttgtcactgctgtgaattgtaatgtaacaggacgggacatgtgatgtgt 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tgactgtaatcttgtcactgctgtgaattgtaatgtaacaggacgggacatgtgatgtgt 58

                                                                    
Query: 311 gtccccctaaaggggttgtgactcacaggttgagaaccatttgatctaaacagcagt 367
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gtccccctaaaggggttgtgactcacaggttgagaaccatttgatctaaacagcagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_n20.g1 MSMg01no060_n20.g1 CHROMAT_FILE:
MSMg01no060_n20.g1 PHD_FILE: MSMg01no060_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:41 2005
         (532 letters)



>mm_chr10_99303737_99304668
          Length = 932

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagacagaaatatcatctgaaatggtactgagtctagaaaggacatgatgggtagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagacagaaatatcatctgaaatggtactgagtctagaaaggacatgatgggtagggg 260

                                                                       
Query: 61  gaagacaggacagatgactcagcccatccacatggcctttggctcaactactggagttgg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gaagacaggacagatgactcagcccattcacatggcctttggctcaactactggagttgg 320

                                                                       
Query: 121 taagtgttagctggagctgttaagtgctttcctgcctttccttccatctctttagagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtgttagctggagctgttaagtgctttcctgcctttccttccatctctttagagtga 380

                                                                       
Query: 181 cttttgtcagtttctcaccttgctactagagagacactttcaaaatgtaaaccacaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgtcagtttctcaccttgctactagagagacactttcaaaatgtaaaccacaaatt 440

                                                                       
Query: 241 ccacagtgactcccccgccccccacacacacacaactgcccacacagtgaatgtcaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ccacagtgactcccccgccccccacacacacacaactgcccacacagtgaaggtcaaatt 500

                                                                       
Query: 301 cccagcatgggctcgcaggaatcttctgttcctttgcctgtgtttccacccccctccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagcatgggctcgcaggaatcttctgttcctttgcctgtgtttccacccccctccagc 560

                                                                       
Query: 361 cctaaatgccaatggctctgtttatggctcttcaaagcagtcctgttcggtcacctactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaaatgccaatggctctgtttatggctcttcaaagcagtcctgttcggtcacctactt 620

                                                                       
Query: 421 atgtctctgccaactgctacttcctttgcttacaatgccttggactgcctgcagaactgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtctctgccaactgctacttcctttgcttacaatgccttggactgcctgcagaactgc 680

                                                             
Query: 481 cacactgcctttcatcggggcacagactctgtagtttgtgaacagaggac 530
           ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacgctgcctttcatcggggcacagactctgtagtttgtgaacagaggac 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)