Query= MSMg01no062_e12.b1 MSMg01no062_e12.b1 CHROMAT_FILE:
MSMg01no062_e12.b1 PHD_FILE: MSMg01no062_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:42 2005
(832 letters)
>mm_chr10_49915498_49916729
Length = 1232
Score = 1498 bits (775), Expect = 0.0
Identities = 802/811 (98%)
Strand = Plus / Minus
Query: 22 atatgttattctgcctttaaaggaacaaagactggttagcatctttcttccattcctttc 81
|||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1229 atatgttattctgcagttattggaacaaagactggttagcatctttctcccatttatttc 1170
Query: 82 atttatgtctgacacgctttgtgggaatagtctgcaacccaagtcatcagaaagcctttt 141
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 atttatgtctgataggctttgtgggaatagtctgcaacccaagtcatcagaaagcctttt 1110
Query: 142 acactttccttctggctatgtctgattttcagtatgcttggagtaatcagcttgtttgtt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 acactttccttctggctatgtctgattttcagtatgcttggagtaatcagcttgtttgtt 1050
Query: 202 tgtttgtttgtttgtttaatggagcacattcaaatcagctcttctccctgccccaacccc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 tgtttgtttgtttgtttaatggagcacattcaaatcagctcttctccctgccccaacccc 990
Query: 262 aaaggaaggttgtggttttgaattttattattccactcagagattatgcatttgtgacac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 aaaggaaggttgtggttttgaattttattattccactcagagattatgcatttgtgacac 930
Query: 322 catattctgaaatgtacactgccaacctattatatcattctgaaaatgatgggacaaagt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 catattctgaaatgtacactgccaacctattatatcattctgaaaatgatgggacaaagt 870
Query: 382 tttaattcatgcagtaattatagtgtttacccctagctttcaaagcagagatcagaggac 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tttaattcatgcagtaattatagtgtttacccctagctttcaaagcagagatcagaggac 810
Query: 442 atccaagggactgtttgaaatcttctttaatgtagcatgcttacttttattatgcaggaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 atccaagggactgtttgaaatcttctttaatgtagcatgcttacttttattatgcaggaa 750
Query: 502 ttttatgttcctgtgataggaggatagtcaaattagatccattaaaaatgaaaaatgtca 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttttatgttcctgtgataggaggatagtcaaattagatccattaaaaatgaaaaatgtca 690
Query: 562 ttattaaaaatgtagccaaaataaaattaacagtgttaaatgttatggaaattgcaactg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttattaaaaatgtagccaaaataaaattaacagtgttaaatgttatggaaattgcaactg 630
Query: 622 tcagaataaagcatcaaggaactgcaatagaactatttatttaaatctacttaaagcaac 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcagaataaagcatcaaggaactgcaatagaactatttatttaaatctacttaaagcaac 570
Query: 682 caatcattaatcttgtcttagcagggactactcattatagtcttgatgcagtgagacgtt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 caatcattaatcttgtcttagcagggactactcattatagtcttgatgcagtgagacgtt 510
Query: 742 actcaacaattatttatgccccctattcacctgcaaaatctatgaaaattatgactatag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actcaacaattatttatgccccctattcacctgcaaaatctatgaaaattatgactatag 450
Query: 802 gaaataaagtgtttgtatcattcaatgttcc 832
|||||||||||||||||||||||||||||||
Sbjct: 449 gaaataaagtgtttgtatcattcaatgttcc 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 832
Length of database: 1232
Length adjustment: 10
Effective length of query: 822
Effective length of database: 1222
Effective search space: 1004484
Effective search space used: 1004484
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_e12.g1 MSMg01no062_e12.g1 CHROMAT_FILE:
MSMg01no062_e12.g1 PHD_FILE: MSMg01no062_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:42 2005
(766 letters)
>mm_chr10_49769774_49770939
Length = 1166
Score = 1419 bits (734), Expect = 0.0
Identities = 759/768 (98%), Gaps = 2/768 (0%)
Strand = Plus / Plus
Query: 1 tatatcagcctatgttgtgtaaaccttgcttccctatttaaatctattggccaaataaaa 60
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 199 tatatcagcctatgttgtgtaaaccttgcttccaaatttaaatctattggttaaataaaa 258
Query: 61 gtgactaaccccccccccccc--acacacacacacacacagccatgagacttaaatagca 118
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtgactaacccccccccccccccacacacacacacacacagccatgagacttaaatagca 318
Query: 119 agtatttgggaagcacagctggggaattaacagcctagcatatagaaaaatagattaggg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtatttgggaagcacagctggggaattaacagcctagcatatagaaaaatagattaggg 378
Query: 179 gtaattcacccagtaattctgttaaagttgattaaataaatccttagaacgttgccttga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtaattcacccagtaattctgttaaagttgattaaataaatccttagaacgttgccttga 438
Query: 239 ttactggggcactagccaggtcatattaagaactatggagttaattaataacttttaaag 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttactggggcactaaccaggtcatattaagaactatggagttaattaataacttttaaag 498
Query: 299 caatatttatcatatgaaaaatgatactttccaatatacatacatagtgcagaatttaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caatatttatcatatgaaaaatgatactttccaatatacatacatagtgcagaatttaat 558
Query: 359 ctaaacatatatattaagtcaccattttgttattaagtcgtggtcttcacacacagaatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctaaacatatatattaagtcaccattttgttattaagtcgtggtcttcacacacagaatt 618
Query: 419 ttcctggaatagactatatcatcttaagcagtaattaccatggggtatattagattactt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcctggaatagactatatcatcttaagcagtaattaccatggggtatattagattactt 678
Query: 479 gaatttatttctcataacactaattttatgttcttttaacaagttatcaacctgccaaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaatttatttctcataacactaattttatgttcttttaacaagttatcaacctgccaaca 738
Query: 539 tccacaactctgttttttattaaatcagtggtttcagactccactgttatcactgaggtt 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tccacaactctgttttttatcaaatcagtggtttcagactccactgttatcactgaggtt 798
Query: 599 ataaaacatttgtcttctgtgtactcgtttattttacttagcataatgcccagaaccata 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ataaaacatttgtcttctgtgtactcgtttattttacttagcataatgcccagaaccata 858
Query: 659 cacaatcaccacaaaggtgaatgattctccttttataaacagtatttcatcctgaatatc 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cacattcaccacaaaggtgaatgattctccttttataaacagtatttcatcctgaatatc 918
Query: 719 taccacattcctttatagtgcttattttttaatttgatatgtgaggcc 766
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 taccacattcctttatagtgcttattttttaatttgatatgtgaggcc 966
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1166
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1156
Effective search space: 873936
Effective search space used: 873936
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
