BAC Information

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BAC

Clone NameMSMg01-063L02
Chromosome10 (Build37)
Map Location 74,918,351 - 75,055,121
singlet/doubletdoublet
Overlap gene1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1
Downstream geneSusd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063L02.T7 (MSMg01no063_l02.b1)MSMg01-063L02.TJ (MSMg01no063_l02.g1)
ACCAG289366AG289367
length766756
length of high quality
(start - end)
153 (201 - 353)243 (142 - 384)
definitionCHROMAT_FILE: MSMg01no063_l02.b1 PHD_FILE: MSMg01no063_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:09 2005CHROMAT_FILE: MSMg01no063_l02.g1 PHD_FILE: MSMg01no063_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,918,351 - 74,918,501)(75,054,879 - 75,055,121)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNNNC
CCCCCCNNNCCCCTTTCTATCTCNNTNCATCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGGTTACCTGCTGCAA
AGTCCAAAGTTAGGCGTAACACGGTGCTGTTGTTGGCTGAGCTTCCATAG
GATCTATACCAATTTGCATCCCTACCAAGAACCACTGTTTTAACTCGACC
AGTATTTGATGCCATGCATAATTCTAGGCCTTGGAGGACCCAGTGATTGC
ACAATAAAAACAACAGCAAAGGCCCTTCCTAATGGAACTGTTGTCCCGTG
GCAGAGAGGGCAGAGGAAGTATAGACCATACTAAGGGGTACTAAATTCCA
GGACCATAATAAAGCAGAGGAAGTACACAATAGACACCTTGCCAAAGCCT
GACAATTGCACATGGCTCTCCAAGACCCTCGTGTTATTAGATCACACCAA
TCTCAGCCCGGTATTCTCTGGCACCCGCGTGAGCACTGTGGAGGAACTTC
TGCCCTCCCGAAAGTACATTACTCGATGAACCAATAGCAATTCACAACAG
GTATACCCAGTTCCTATTACGCTTCCCAGTTTGCCCTTGAAATCTCGTAC
CTAAGTGATCCTCTGCCTATGCCTCCTGAACCCCTCATTAGCACCCATGT
AACTTTGCCCCTCCCAGTACATAAGTCCAACATTGTTACTTTACGCTGTC
GACTCCACCCCCTCTG
NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNTTCNTCCCTCCCCNNNTC
CTTTCCCCCTNNNACACCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGTGTG
TTCCCAGGCGTCCCATGAAGGAGGTAGCAGCCTACACGCCACATCACAGA
GAGGAAACTGAGGCCCACATGGTGCCATAGAGCTTGGCTTGTGTGACTGC
TCTCCTCTGAACGAAGAGTGCAACCCTCAGATGCCAGGTGGACATGAAGC
AGCAGGAGACACTCAGCCTTTGGGGTTCAGTTGTCACCCCAACCTGTAGC
CCAGTGTCAGTCCAGATGACAGCCCTCCAGAAACCTACTCGCCAGAACAC
CAAAGCAGCCTTACCTTCTATGATTTTGGTAACTAACCGCCGCGGCCATT
AAGTACCTAGGGTTGGGCACACTGGTGTCCCCCCCAAGAGTTGAGGGACT
TTAGAAAGACTGACCCTTCCACAGCCTTCCCCTCCTGGAAAGAACAGCCG
CAGCAACTTTAGAGGACAATACCCGTAGACCCAAGACTTCCCACAGTGAC
CCTGGTCAGGCTTCTTCCCCCGGGCATTACGCTTAAGTCGATTGAAATGC
TCCCTGGTCTTTACTCATTTCTACTGTTACTTTCTTGAACGCACCATTTC
TGGATGTGGTTCACCATTGTACTCTTCTTACATCATTGCACACGGGGCCC
ATTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_l02.b1 MSMg01no063_l02.b1 CHROMAT_FILE:
MSMg01no063_l02.b1 PHD_FILE: MSMg01no063_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:09 2005
         (153 letters)



>mm_chr10_74918151_74918703
          Length = 553

 Score =  269 bits (139), Expect = 6e-77
 Identities = 148/151 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatctataccaatttgcatccctaccaagaaccactgttttaactcgaccagtatttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatctataccaatttgcatccctaccaagaaccactgttttaactcgaccagtatttgat 260

                                                                       
Query: 61  gccatgcataattctaggccttggaggacccagtgattgcacaataaaaacaacagcaaa 120
           |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct: 261 gccatgcataattctaggccttggaggacccagtgattacacaataaagacaacagtaaa 320

                                          
Query: 121 ggcccttcctaatggaactgttgtcccgtgg 151
           |||||||||||||||||||||||||||||||
Sbjct: 321 ggcccttcctaatggaactgttgtcccgtgg 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no063_l02.g1 MSMg01no063_l02.g1 CHROMAT_FILE:
MSMg01no063_l02.g1 PHD_FILE: MSMg01no063_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:09 2005
         (243 letters)



>mm_chr10_75054679_75055321
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgtgtgttcccaggcgtcccatgaaggaggtagcagcctacacgccacatcacagag 60
           |||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 443 acctgtgtgttccctggcgtcccatgaaggaggtagcagcctaaaagccatatcacagag 384

                                                                       
Query: 61  aggaaactgaggcccacatggtgccatagagcttggcttgtgtgactgctctcctctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggaaactgaggcccacatggtgccatagagcttggcttgtgtgactgctctcctctgaa 324

                                                                       
Query: 121 cgaagagtgcaaccctcagatgccaggtggacatgaagcagcaggagacactcagccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cgaagagtgcaaccctcagatgccaggtggacatgaagcagcaggagacactcagccttt 264

                                                                       
Query: 181 ggggttcagttgtcaccccaacctgtagcccagtgtcagtccagatgacagccctccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggggttcagttgtcaccccaacctgtagcccagtgtcagtccagatgacagccctccaga 204

              
Query: 241 aac 243
           |||
Sbjct: 203 aac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)