BAC Information

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BAC

Clone NameMSMg01-063L18
Chromosome10 (Build37)
Map Location 5,832,738 - 5,833,142
singlet/doubletsinglet
Overlap geneGm221
Upstream geneSyne1, Esr1, LOC100041310
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063L18.T7 (MSMg01no063_l18.b1)MSMg01-063L18.TJ (MSMg01no063_l18.g1)
ACCAG289397AG289398
length1,251708
length of high quality
(start - end)
---476 (75 - 550)
definitionCHROMAT_FILE: MSMg01no063_l18.b1 PHD_FILE: MSMg01no063_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:13 2005CHROMAT_FILE: MSMg01no063_l18.g1 PHD_FILE: MSMg01no063_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNTTTTNNNNNTTTTTTNNCCCNNNNNNCTTTNNNNN
NNNNNNTTTNNNNNNNTNNTTATNNNTTTTTTTTTTACAANCTTNCTCCN
CACCGCATCACCCACTTCCTNTCCGGCTCTATTTTTATCCTTTCCNCCCG
TTTTTNCGTTCGCTTTTTATTACGCTATGTCCCCCCCTTTTACTATTTTC
ATGTCTCTCCGTTCCGTCGCGCTTACCGTCACACTTTACCTCTCTCTTCC
TTACCCTCCTTCCCCCCANTTGCATCCTTCACACGGCCCTNCCCCTCCCA
CTTCGTTAACAACCATGCAACGTCACAGCTCCATAGTACCAACTACGTCT
TTCTACCCGTCCGCGCGCCCGAACGATAGCCTCTTGCGCGTTCTTTTTTA
TCTATAGCATTCTGTCTCCGTGTTCCCTCTCGCTTGTTAATATTTCGGTC
TATCATTCCCTTCGCACTTTCCTTACCTTTCTCACCCGTCCGAGTTCTCC
TTCTGTCTCGCACGTTCTTCTCTTTCCCCTTATCCCCGTTTTACCTCTGC
AGTATGCATTCCACTGCCACGTCGCCTCTTCACTCTCTATCATTTCCTCT
TCCACCATCGACGCATATTCCTACCTTATCCAATCCGCTTTACTCTACAC
TTTCCCCGGCCGCGTCGCTTCATCGATTCTCGTTTGACCAATTAGTACGC
AAAGTGTGGTTCCCGAGTAAGACCGTCGGTTCACGCAAGAGAAGATAGCC
ATCGGGAGATACGTAAACGTATAGCGTGCGGCCGCCTGATCGTGCCACAA
GACGACATATCTGAGAGACGCAACATTACGAGGACTCGAGCACTGTTAGT
GCGTCTTCGACGACAATGACGTGACGTGTAGACTACGGCGTGTAGTATAA
TAAATCACGACGCGACGCTAGGCACATATACTTGTAGCCTTAGTCGGCTG
ATGAGTGGAGAGATCGCGCTTGATGAATATCTGTGTGCCGCTCGCCCATC
GAGTGTACGTGTATTACATTATGCGCCACGCNCGCCACATACACTTATTT
ACTCTCGCACTTCTCGCGAGTCCGCATATGAATGCCGACNGTGCGCGCAT
CTCCGAGTCACCGCTTAAATTATCGTGGCCGCTGTCCTCTCTATTAGCGA
TGTTGTGCCGTTGCACATTGAACACGCGTCGGTTACGCTCCTAATCGATC
TACTGTGATCTCTCTCACGTATGCTATGCCGTCTTCGATATCATCTCGCG
N
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGTCGAGTACACAGACCAAAAAAA
TAAAATAAAAATGAGCAGCATCTTAAGTTGATTTCATGCCACATGAGCAG
CATCTTAAGTTGATTTCATGCCACTCGGGAAACATTTCTGGTGGGTATTA
CAAAAAGCAATAAAATATTTTACAATGGGAACCAATTTACTCTATCAGCC
TTGCTGCATTTAGTACTGATTTACAGTGACTTGGGGACCCTCCAAGCCAC
AGTGATTGTGATTCCATGGCCACAACTGTTTCTCTAGCAAATCCAGATGT
TCAGGATATCATGGTATCTCTCCCATCGGCCTTCTAGACCATAATTATAG
TTGGTAAAGAAAAAATGACATTCAGATTCCTGGGGGAAATATGGTGGCAA
AGGGAAATTATGCAAGCGGAAGGTCTGGATGGACTTCTGTGGCTTCAGTA
GCATCAAAATGCTGGAGGGTGCTTGCATTCGAGAATGTTGGATCTCCGCT
GTGGGACCATCTTCGCTCATGTGTGGTTCTTTGAAACTGGGAGTGTGCAT
GCACACAGAGTTGCACATGTTTCCCGTTCGCCAACTGTTAGTTACCTCGC
AGACCAGGCTAGACCCCTTCCCAGCCTCCTGCCCTGAAATGCGAAAGAAC
CCCAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_l18.g1 MSMg01no063_l18.g1 CHROMAT_FILE:
MSMg01no063_l18.g1 PHD_FILE: MSMg01no063_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:13 2005
         (476 letters)



>mm_chr10_5832470_5833342
          Length = 873

 Score =  725 bits (375), Expect = 0.0
 Identities = 399/409 (97%), Gaps = 5/409 (1%)
 Strand = Plus / Plus

                                                                       
Query: 69  atgagcagcatcttaagttgatttcatgccactcgggaaacatttctggtgggtattaca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atgagcagcatcttaagttgatttcatgccactcgggaaacatttctggtgggtattaca 328

                                                                       
Query: 129 aaaagcaataaaatattttacaatgggaaccaatttactctatcagccttgctgcattta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaagcaataaaatattttacaatgggaaccaatttactctatcagccttgctgcattta 388

                                                                       
Query: 189 gtactgatttacagtgacttggggaccctccaagccacagtgattgtgattccatggcca 248
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 389 gtactgatttacagtgacttggggactctccaagccacagtgattgtgattccatggcca 448

                                                                       
Query: 249 caactgtttctctagcaaatccagatgttcaggatatcatggtatctctcccatcggcct 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caactgtttctctagcaaatccagatgttcaggatatcatggtatctctcccatcggcct 508

                                                                       
Query: 309 tctagaccataattatagttggtaaagaaaaaa-tgacattcagattcctgggggaaata 367
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 509 tctagaccataattatagttggtaaagaaaaaaatgatattcagattcctgggggaaata 568

                                                                       
Query: 368 tggtggcaaagggaaattatgcaagcggaaggtctggatggacttctgtggcttcagtag 427
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 569 tggtggcaaagggaaattatgcaagcggaaggtctgga----cttctgtggcttcagtag 624

                                                            
Query: 428 catcaaaatgctggagggtgcttgcattcgagaatgttggatctccgct 476
           |||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct: 625 catcaaaatgctggagggtgtttgcattcgagaatgctgggtctccgct 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 873
Length adjustment: 10
Effective length of query: 466
Effective length of database: 863
Effective search space:   402158
Effective search space used:   402158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)