Query= MSMg01no063_m23.b1 MSMg01no063_m23.b1 CHROMAT_FILE:
MSMg01no063_m23.b1 PHD_FILE: MSMg01no063_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:19 2005
(325 letters)
>mm_chr10_126730444_126731167
Length = 724
Score = 476 bits (246), Expect = e-139
Identities = 258/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 55 ttagaaaggatctagagaagggctaggaggaggctggaggtaaaggactgtttcttcctt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 ttagaaaggatctagagaagggctaggaggaggctggaggtaaaggactgttttttcctt 314
Query: 115 ttctccacagtgttccagaaggaagtgcatcttcatacaccaccacacctgaaagcaggt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttctccacagtgttccagaaggaagtgcatcttcatacaccaccacacctgaaagcaggt 374
Query: 175 aatcttggccaccctctcagtcagctgcgaatgctgttcatgttgctttgctgggggaag 234
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 375 aatcttggccaccctctcagtcagctgcgaatgctgctcatgttgctttgctggggga-g 433
Query: 235 agttagacaaggccttcatctgaacgagcttttgctgtcagaccatgtctttctctgacc 294
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 434 agttagacaaggccttcatctgaacaagcttttgctgtcagaccatgtctttctctgacc 493
Query: 295 ccataatgttgtttgagagctg 316
||||||||||||||||||||||
Sbjct: 494 ccataatgttgtttgagagctg 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space: 225940
Effective search space used: 225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_m23.g1 MSMg01no063_m23.g1 CHROMAT_FILE:
MSMg01no063_m23.g1 PHD_FILE: MSMg01no063_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:19 2005
(603 letters)
>mm_chr10_126849662_126850664
Length = 1003
Score = 899 bits (465), Expect = 0.0
Identities = 477/481 (99%), Gaps = 1/481 (0%)
Strand = Plus / Minus
Query: 123 gcacagcaacctagcttttgtgaagagaacaacctaacactctgagtgacaaatgtggtg 182
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1003 gcacagcaacctagcttttgtaaagagaccaacctaacactctgagtgacaaatgtggtg 944
Query: 183 agagacatggaacagttctataattccagtattcaggaaactaaagcaggagggttctga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 agagacatggaacagttctataattccagtattcaggaaactaaagcaggagggttctga 884
Query: 243 ggctgaggccagcctggtctacagagtgagttccaggatagccagggctatagaaagaaa 302
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ggctgagg-cagcctggtctacagagtgagttccaggatagccagggctatagaaagaaa 825
Query: 303 ccctgtctcaaaaaaataaaaaaataaaaaaaaataaaatagtcatttgcttatatggct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ccctgtctcaaaaaaataaaaaaataaaaaaaaataaaatagtcatttgcttatatggct 765
Query: 363 acatgctatatttttttcatgaccaatacatgtctaaagtaatgaacattgtatcatttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 acatgctatatttttttcatgaccaatacatgtctaaagtaatgaacattgtatcatttc 705
Query: 423 tgtaaataccatttgtgatgatctttggtcttgcctgaagccattcaaattctcatttct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgtaaataccatttgtgatgatctttggtcttgcctgaagccattcaaattctcatttct 645
Query: 483 caattctggaaagggcaagccaagatgggtaatactggctagaccaggaaagaaaggtaa 542
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 644 caattctggaaagggcaagccaggatgggtaatactggctagaccaggaaagaaaggtaa 585
Query: 543 ctactcgttccactacaatgatactccagaataagtagtctgattaatatacttattcaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctactcgttccactacaatgatactccagaataagtagtctgattaatatacttattcaa 525
Query: 603 a 603
|
Sbjct: 524 a 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
